Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397969.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1275.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.18, C:0.06, G:0.08, T:0.20

Warning! 884 characters in sequence are not A, C, G, or T


Found at i:1027 original size:169 final size:171

Alignment explanation


    Indices: 682--1031  Score: 402
    Period size: 169  Copynumber: 2.1  Consensus size: 171

        672 NNNNNNNNNN

                                                *                      *     
        682 GGTGACTATAAATGAACTTTTCTTGCCAATGAATACCTTTTTCTTCACGTTTCTAGAGGTAGACA
          1 GGTGACTATAAATGAACTTTTCTTGCCAATGAATACATTTTTCTTCACGTTTCTAGAGGAAGACA

              *           *    * *       *        *  *                       
        747 TTTAATTATAATCTGTTTTGATAAAAAATGTAAACAAAGTTGAACTTAAAATCAATTTCAAGATT
         66 TTCAATTAT-ATCTCTTTTAACAAAAAATATAAACAAAATTCAACTTAAAATCAATTTCAAGATT

             *                            **********  
        812 ATAAAACCATTTAAAGTGAGTAATAAGGCTNNNNNNNNNNTG
        130 ACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAGTG

                                              *            *      *        * 
        854 GGTGACTAT-AATGAACTTTTCTTGCCAATGAATGCATTTTTCTTCATGTTTCTCGAGGAAGAGA
          1 GGTGACTATAAATGAACTTTTCTTGCCAATGAATACATTTTTCTTCACGTTTCTAGAGGAAGACA

                                  *                           *              
        918 TTCAATTAT-TCTCTATTTAACCAAAAATATAAA-AAAATTCAACTTAAATTCAATTAT-AAGAT
         66 TTCAATTATATCTCT-TTTAACAAAAAATATAAACAAAATTCAACTTAAAATCAATT-TCAAGAT

                    *                                  
        980 TACAAAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGGAGTG
        129 TACAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAGTG

                     
       1023 GGTGACTAT
          1 GGTGACTAT

       1032 NNNNNNNNNN


Statistics
Matches: 149,  Mismatches: 27, Indels: 7
        0.81            0.15        0.04

Matches are distributed among these distances:
 169   68  0.46
 170   15  0.10
 171   57  0.38
 172    9  0.06

ACGTcount: A:0.36, C:0.12, G:0.14, T:0.35


Consensus pattern (171 bp):   
GGTGACTATAAATGAACTTTTCTTGCCAATGAATACATTTTTCTTCACGTTTCTAGAGGAAGACA
TTCAATTATATCTCTTTTAACAAAAAATATAAACAAAATTCAACTTAAAATCAATTTCAAGATTA
CAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAGTG
Done.