Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397971.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1277.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4229
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.22

Warning! 1704 characters in sequence are not A, C, G, or T


Found at i:1232 original size:171 final size:171

Alignment explanation


    Indices: 640--1235  Score: 439
    Period size: 171  Copynumber: 3.5  Consensus size: 171

        630 NNNNNNNNNN

                   * *         * *          *                       *   *    
        640 AAGAAAAGTTCATTTATAGTCTC-CATTTCTTCAAAAGCCTTATTACTCACTTTAACTGGCTTTA
          1 AAGAAAAATCCATTTATAGCCACTCATTTCTTAAAAAGCCTTATTACTCACTTTAAATGGTTTTA

                              *     *  *                      *  **       *  
        704 TAATCTCAAAATTGATTTGAAGTTTAATTTTTTTACATTTTTGGTTAAAAAAGCCTATAATTTAA
         66 TAATCTCAAAATTGATTTTAAGTTAAACTTTTTTACATTTTTGGTTAAAACAGATTATAATTCAA

                 *        *      *  * *   ** **      * 
        769 TGTCTGCCTT-GAGGAACATGTAGCAGAAGCCAACCATTGGCA
        131 TGTCTACCTTGGA-AAACATGAAGAAAAAGGTATTCATT-GAA

            *                * *      **     *   **********   *  *           
        811 CA-AAAAATCCATTTATTGTCACTCAAGTCTTCGAAANNNNNNNNNNCT-GCTCTAAATGGTTTT
          1 AAGAAAAATCCATTTATAGCCACTCATTTCTT-AAAAAGCCTTATTACTCACTTTAAATGGTTTT

                                     *                                       
        874 ATAATCTCAAAATTGATTTTAAGTTCAACTTTTTTACATTTTTGGTTAAAACAGATTATAATTCA
         65 ATAATCTCAAAATTGATTTTAAGTTAAACTTTTTTACATTTTTGGTTAAAACAGATTATAATTCA

                                                      
        939 ATGTCTACCTTGGAAAACATGAAGAAAAAGGTATTCATTGAA
        130 ATGTCTACCTTGGAAAACATGAAGAAAAAGGTATTCATTGAA

                               *            *     *          **********      
        981 AAGAAAAATCCATTTATAGTCACTCATTTCTTCAAAAGGCTTATTACTCNNNNNNNNNNGTTTTA
          1 AAGAAAAATCCATTTATAGCCACTCATTTCTTAAAAAGCCTTATTACTCACTTTAAATGGTTTTA

               *    *                  *       **          *     *        *  
       1046 TAACCTCATAATTGATTTTAAGTTAAATTTTTTTATGTTTTTGGTTAGAACAGGTTATAATTGAA
         66 TAATCTCAAAATTGATTTTAAGTTAAACTTTTTTACATTTTTGGTTAAAACAGATTATAATTCAA

               *        *                       *    * 
       1111 TGTTTACCTTGGGAAAC-TAGAAGAAAATA-GTATTTATTGGA
        131 TGTCTACCTTGGAAAACAT-GAAGAAAA-AGGTATTCATTGAA

            **     *                *    *                                  *
       1152 TCGAAAAGTCCATTTATAGCCACTTATTTTTTAAAAAGCCTTATTACTCACTTTAAATGGTTTTG
          1 AAGAAAAATCCATTTATAGCCACTCATTTCTTAAAAAGCCTTATTACTCACTTTAAATGGTTTTA

                               
       1217 TAATCTCAAAATTGATTTT
         66 TAATCTCAAAATTGATTTT

       1236 NNNNNNNNNN


Statistics
Matches: 320,  Mismatches: 98, Indels: 14
        0.74            0.23        0.03

Matches are distributed among these distances:
 170   25  0.08
 171  287  0.90
 172    8  0.03

ACGTcount: A:0.33, C:0.14, G:0.12, T:0.38


Consensus pattern (171 bp):   
AAGAAAAATCCATTTATAGCCACTCATTTCTTAAAAAGCCTTATTACTCACTTTAAATGGTTTTA
TAATCTCAAAATTGATTTTAAGTTAAACTTTTTTACATTTTTGGTTAAAACAGATTATAATTCAA
TGTCTACCTTGGAAAACATGAAGAAAAAGGTATTCATTGAA
Done.