Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397972.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1278.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4686
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.28
Warning! 1024 characters in sequence are not A, C, G, or T
Found at i:826 original size:173 final size:172
Alignment explanation
Indices: 461--851 Score: 516
Period size: 172 Copynumber: 2.3 Consensus size: 172
451 NNNNNNNNNN
* * * *
461 TTTTGAAGGTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCTTTATGCTT
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACCTTTTTCATTATGCTT
* * * ** *
526 CTAAGGGTACACATTCAATTCTAGTCTGTTTTTATAAAAAATGACCGAAGAATTCAAATTTAAAT
66 CTAAGGGTACACATTCAATTATAGTCTGTTTTAACAAAAAATGACAAAAAAATTCAAATTTAAAT
* * *
591 CAATTTTGAGATTACAAAACCATTTAAAGTGAGTAATAAGGC
131 CAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
* * * *
633 TTTTAAAGGAATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGCCTTTTTCATTATGGTT
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACCTTTTTCATTATGCTT
** * *** *
698 CTCAA-GGTGGACATTCAATTATAGTTTGTTTTAACCTTAAATGTA-AAAAAAATTCAACTTTAA
66 CT-AAGGGTACACATTCAATTATAGTCTGTTTTAACAAAAAATG-ACAAAAAAATTCAAATTT-A
*
761 AATCAATTATGACATTACAAAACCATTTAAAGTAAGTGATAAGGC
128 AATCAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
806 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAA
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAA
852 CTCTCTTTTC
Statistics
Matches: 189, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
172 100 0.53
173 89 0.47
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (172 bp):
TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACCTTTTTCATTATGCTT
CTAAGGGTACACATTCAATTATAGTCTGTTTTAACAAAAAATGACAAAAAAATTCAAATTTAAAT
CAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
Found at i:875 original size:173 final size:172
Alignment explanation
Indices: 461--890 Score: 512
Period size: 173 Copynumber: 2.5 Consensus size: 172
451 NNNNNNNNNN
* * * * **
461 TTTTGAAGGTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCTTTATGCTT
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACTCTTTTCTTCATATTT
* * * * ** *
526 CT-AAGGGTACACATTCAATTCTAGTCTGTTTTTATAAAAAATGACCGAAGAATTCAAATTTAAA
66 CTCAA-GGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGACAAAAAAATTCAAATTTAAA
* * *
590 TCAATTTTGAGATTACAAAACCATTTAAAGTGAGTAATAAGGC
130 TCAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
* * *
633 TTTTAAAGGAATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGC-C-TTT-TTCATTATG
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACTCTTTTCTTCA-TAT-
* * *** *
695 GTTCTCAAGGTGGACATTCAATTATAGTTTGTTTTAACCTTAAATGTA-AAAAAAATTCAACTTT
64 -TTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATG-ACAAAAAAATTCAAATTT
*
759 AAAATCAATTATGACATTACAAAACCATTTAAAGTAAGTGATAAGGC
127 -AAATCAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
*
806 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAACT-CTCTTTTCTTCACATT
1 TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAA-TACTCTTTTCTTCATATT
870 TCTCAAGGTAGACATTCAATT
65 TCTCAAGGTAGACATTCAATT
891 TTAAATCAAT
Statistics
Matches: 218, Mismatches: 30, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
169 3 0.01
170 4 0.02
172 89 0.41
173 111 0.51
174 2 0.01
175 5 0.02
176 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (172 bp):
TTTTGAAGGTATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATACTCTTTTCTTCATATTT
CTCAAGGTAGACATTCAATTATAGTCTGTTTTAACAAAAAATGACAAAAAAATTCAAATTTAAAT
CAATTATGACATTACAAAACCATTTAAAGTAAGTAATAAGGC
Found at i:1144 original size:303 final size:295
Alignment explanation
Indices: 634--1193 Score: 700
Period size: 303 Copynumber: 1.9 Consensus size: 295
624 TAATAAGGCT
* * * * *
634 TTTAAAGGAATGAGTGACTATAAATGGGCTTTTCTTGCCAATGAATGCCTTTTTCATTATGGTTC
1 TTTAAAGGAATGAGTGACTAGAAATGGACTTTTCTTGCCAATAAATACCTTTTT-ATTACGGTTC
* * ** * * *
699 TCAAGGTGGACATTCAATTATAGTTTGTTTTAACCTTAAATGTAAAAAAAATTCAACTTTAAAAT
65 TCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAACGTAAAAAAAACTCAACTGTAAAAT
* * * *
764 CAATTATGACATTACAAAACCATTTAAAGTAAGTGATAAGGCTTTTGAAGGTATGAGTGACTATA
130 CAATTATGACATTACAAAACCATTTAAAGCAAGTAAAAAGGCTTTTGAAGGTAAGAGTGACTATA
* * * *
829 AATGGGCTTTTCTTGCCAATGAACTCTCTTT-TCTTCACATTTCTCAAGGTAGACATTCAATTTT
195 AATGGACTTTTCTTACCAATGAACTCT-TTTGTCTTCACATTTCTCAAGGTAAACATGCAATTTT
893 AAATCAATTTTAAGAATATAAAACCATTTAAAGTTTG
259 AAATCAATTTTAAGAATATAAAACCATTTAAAGTTTG
*
930 NNNNNNNNNNTTTAAAGGAATGAGTTACTAGAAATGGACTTTTCTTGCCAATAAATACCTTTTT-
1 ----------TTTAAAGGAATGAGTGACTAGAAATGGACTTTTCTTGCCAATAAATACCTTTTTA
* * * *
994 TTACGTTTCTCAAGGTAGACATTGAGTTATAGTCTGTTTTAACCAAAAACGT-GAAAAAACTCAA
56 TTACGGTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAACGTAAAAAAAACTCAA
*
1058 -TCGTAAAATCAATTAT-AGCATTACAAAACTATTTAAAGCAAGTAAAAAGGCTTTTGAAGGTAC
121 CT-GTAAAATCAATTATGA-CATTACAAAACCATTTAAAGCAAGTAAAAAGGCTTTTGAAGGTA-
*
1121 AG-GTGACTATAAATGGACTTTTCTTACCAATGAATTCTTTTGTCTTCACATTTCTCAAGGTAAA
183 AGAGTGACTATAAATGGACTTTTCTTACCAATGAACTCTTTTGTCTTCACATTTCTCAAGGTAAA
1185 CATGCAATT
248 CATGCAATT
1194 ATAATTTGTT
Statistics
Matches: 223, Mismatches: 27, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
302 5 0.02
303 125 0.56
304 44 0.20
306 49 0.22
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.35
Consensus pattern (295 bp):
TTTAAAGGAATGAGTGACTAGAAATGGACTTTTCTTGCCAATAAATACCTTTTTATTACGGTTCT
CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAACGTAAAAAAAACTCAACTGTAAAATC
AATTATGACATTACAAAACCATTTAAAGCAAGTAAAAAGGCTTTTGAAGGTAAGAGTGACTATAA
ATGGACTTTTCTTACCAATGAACTCTTTTGTCTTCACATTTCTCAAGGTAAACATGCAATTTTAA
ATCAATTTTAAGAATATAAAACCATTTAAAGTTTG
Found at i:2222 original size:172 final size:170
Alignment explanation
Indices: 1936--2632 Score: 647
Period size: 171 Copynumber: 4.1 Consensus size: 170
1926 NNNNNNNNAA
** * * * * *
1936 TTTTCTTCACGTTTCTGAAGGTAGACATTTAATTATAGTCTGTTTTATCCAAAAATATAAAAATA
1 TTTTCTTCACGTTTCCCAAGGTAGACATTCAATTATAGTATATTTTAACCAAAAATATAAAAAAA
* * * *
2001 TTCAACCTAAAATCAATTGTGACATTATAAAACTATTTAAAGCAAGTAATAAGGATTTTTTAAGG
66 TTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-TTTTTAAAGG
* * *
2066 TATAGGTGACTATAATTAGACTTTTCTTGTCAATGAATACTT
130 T-TAGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTT
* * * * * *
2108 TTTTCTTTACGTTTCTCAAGGTAGATATTCAATTCTAGTATATTTTAACAAAAAATGTAAAAAAA
1 TTTTCTTCACGTTTCCCAAGGTAGACATTCAATTATAGTATATTTTAACCAAAAATATAAAAAAA
* * *
2173 TTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTCTGAAGGC
66 TTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAATAAGGTTTTTAAAGG-
* **
2238 TT-GAATGACTATAAATGGACTTTT-TGTGCCAATGGTTGAC-T
130 TTAG-GTGACTATAAATGGACTTTTCT-TGCCAATGAAT-ACTT
* * * * *
2279 TTTGCTTCACG-TTCCCTAAGGTAGGCACTCAATTATAGCATTTTTTAACCAAAAATATAAAAAA
1 TTTTCTTCACGTTTCCC-AAGGTAGACATTCAATTATAGTATATTTTAACCAAAAATATAAAAAA
* * ** *
2343 ATTCAACTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAGTGAGTAATAAGGCTTTTGAAAG
65 ATTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAATAAGG-TTTTTAAAG
* ** *
2408 CTTTA-GCAACTATAAATGGACTTTTCTTGCCAATGAGTA-TCT
129 -GTTAGGTGACTATAAATGGACTTTTCTTGCCAATGAATACT-T
* * * * * * * * * *
2450 TTTTCTACACGTTTCCCAAGGTAAACAATCAATTATAATCTGTTCTAACTAAAAACAT--CAAAA
1 TTTTCTTCACGTTTCCCAAGGTAGACATTCAATTATAGTATATTTTAACCAAAAATATAAAAAAA
* * * * ** ** *
2513 -TCAATCTAAAATCAATTATGAGGTTATAAAACTATTTAAAGTGAGTAATAAAGGTTTCGAAAGA
66 TTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAAT-AAGGTTTTTAAAGG
* * * * *
2577 ATGGGTGACTATAAATGGACTTTTCTTACCAATGAATTCAT
130 TTAGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTT
*
2618 TTTTCTTCACTTTTC
1 TTTTCTTCACGTTTC
2633 TTGAGGTGGA
Statistics
Matches: 431, Mismatches: 79, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
167 1 0.00
168 94 0.22
169 8 0.02
170 7 0.02
171 200 0.46
172 121 0.28
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (170 bp):
TTTTCTTCACGTTTCCCAAGGTAGACATTCAATTATAGTATATTTTAACCAAAAATATAAAAAAA
TTCAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCAAGTAATAAGGTTTTTAAAGGT
TAGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTT
Found at i:3237 original size:341 final size:338
Alignment explanation
Indices: 2798--3947 Score: 1237
Period size: 341 Copynumber: 3.4 Consensus size: 338
2788 NNNNNATTCC
* * * **
2798 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAATTTGTTTTAATTAAAAATGTATAAAG
1 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATGTA-AAA-
* * * *
2863 A-ATTGAA-ATTCAAATCAATTTTGAGAATATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAA
64 ACATTCAACA-TAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGA
* *
2926 AAGAATGGGTGACTATAAATAGATTTTTCTTGCGAATGAATGCCTTTTTTACGTTTCTCGAAGTA
128 AAGAATGGGTGACTATAAATAGATTTTTCTTGCCAATGAATGCTTTTTTTACGTTTCTCGAAGTA
* * ** * *
2991 GATAATGAATTATAGTCTATTTTAACCAAAAACGTAAACAAATTCAATCGTAAAATTAATTATGG
193 GAAAATCAATTATAGTCTATTTTAACCAAAAATATAAA-AAATTCAA-CCTAAAATCAATTATGG
* *
3056 CATTACAAAACCATTTAAAGGAAGTAATAAGAC-TTTTGAAGGTACGAGTGACTATAAATAAACT
256 CATTACAAAACTATTTAAAGGAAGTAATAAGACTTTTTGAAGGTA-GAGTGACTATAAATAGACT
* * *
3120 TTTCATGCAAATGAATACT
320 TTTCTTGCCAATGAATGCT
* * * *
3139 TTTTTCTTCATATTTCTTAAGGTAGAAATTCAATTCTAGTCTATTTTAACCAAAAATGTACAAAG
1 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATGTA-AAA-
* *
3204 A-ATTCAA-ATGTAAATCAATTTTGAGATTATAAAACCAGTTAAAGTGAGTAATAAGGCTTTTGA
64 ACATTCAACAT-AAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGA
* * ** * * * *
3267 AA-AATGGGTGACTATAAATGGATTTTTCTTGCTAATGAATATTTTTTTCTTCATTTTTCCCAAG
128 AAGAATGGGTGACTATAAATAGATTTTTCTTGCCAATGAATGCTTTTTT-TACGTTTCT-CGAAG
* * *
3331 -AGAAACATTCAATTCTAG-CTGTTTTAACAAAAAATATAAAAAAATTCAACCTAAAATCAATTA
191 TAGAAA-A-TCAATTATAGTCTATTTTAACCAAAAATAT-AAAAAATTCAACCTAAAATCAATTA
* * * *
3394 TGGCGTTATAAAACTATTT-AAGGTGAGTAATAA-AGCTTTTTGAAGGTATGGGTGACTATAAAT
253 TGGCATTACAAAACTATTTAAAGG-AAGTAATAAGA-CTTTTTGAAGGTA-GAGTGACTATAAAT
3457 AGAC-TTTCTTGCCAATGAATGCT
315 AGACTTTTCTTGCCAATGAATGCT
** * * * * *
3480 TTTTTCTTCATGTTTCTAAAGGAAGACATTCAATTATAGTCTATTTTATCCAAAAAAGTAAAAAT
1 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATGTAAAAAC
* * * * *
3545 ATTCAACCTAAAATCAATTATGATATTATAAAACTATTTAAAGTGAGTAATAAGGCGTTTTGAAG
66 ATTCAACATAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTTGAAA
* * * *
3610 GTATAGGTGACTATAATTAGATTTTTCTTGCCAATGAATGCATTTTTCTTCACGTTTC-AGAAGG
130 GAATGGGTGACTATAAATAGATTTTTCTTGCCAATGAATGC-TTTTT-TT-ACGTTTCTCGAA-G
* * * *
3674 TAGACATTCAATTACAGTCTATTTTATCCAAAAATATAAAAATATTCAACCTAAAATCAATTATG
191 TAGAAAATCAATTATAGTCTATTTTAACCAAAAATATAAAAA-ATTCAACCTAAAATCAATTATG
* * * * * *
3739 ACATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTTAAAGGTATAGGTGACTATAATTAGAC
255 GCATTACAAAACTATTTAAAGGAAGTAATAAGACTTTTTGAAGGTAGA-GTGACTATAAATAGAC
3804 TTTTCTTGCCAATGAATGCT
319 TTTTCTTGCCAATGAATGCT
* * * * ** *
3824 TGTTTCTTTACGTTTCTCAAGGTAGACATTCAATTCTAGTC-AGTTTTAATAAAAAATTTAAAAA
1 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAGTCTA-TTTTAACCAAAAATGTAAAAA
* * * * ** *
3888 CGTTTAACCTAAAATCAATTTTAAGATTATAAAACCATTTAAAGCAAGTAGTAAGGCTTT
65 CATTCAACATAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
3948 CGAAGGCTTG
Statistics
Matches: 677, Mismatches: 107, Indels: 48
0.81 0.13 0.06
Matches are distributed among these distances:
339 1 0.00
340 98 0.14
341 237 0.35
342 103 0.15
343 109 0.16
344 129 0.19
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (338 bp):
TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAATGTAAAAAC
ATTCAACATAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAG
AATGGGTGACTATAAATAGATTTTTCTTGCCAATGAATGCTTTTTTTACGTTTCTCGAAGTAGAA
AATCAATTATAGTCTATTTTAACCAAAAATATAAAAAATTCAACCTAAAATCAATTATGGCATTA
CAAAACTATTTAAAGGAAGTAATAAGACTTTTTGAAGGTAGAGTGACTATAAATAGACTTTTCTT
GCCAATGAATGCT
Found at i:3256 original size:172 final size:170
Alignment explanation
Indices: 2798--4008 Score: 1139
Period size: 172 Copynumber: 7.1 Consensus size: 170
2788 NNNNNATTCC
* * * * * **
2798 TTTTTCTTCACATTTCTCAAGGTAGACATTCAATTATAATTTGTTTTAATTAAAAATGTATAAAG
1 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGTA-AAA-
* ** * * * * *
2863 AATTGAAATTCAAATCAATTTTGAGAATATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAA
64 AATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
* * * *
2928 GAATGGGTGACTATAAATAGATTTTTCTTGCGAATGAATGC-
129 GTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
* * * * * *
2969 CTTTT-TT-ACGTTTCTCGAA-GTAGATAATGAATTATAGTCTATTTTAACCAAAAACGTAAACA
1 TTTTTCTTCACGTTTCTC-AAGGTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGTAAA-A
* * * *
3031 AATTCAATCGTAAAATTAATTATG-GCATTACAAAACCATTTAAAG-GAAGTAATAAGACTTTTG
64 AATTCAA-CCTAAAATCAATTATGAG-ATTATAAAACCATTTAAAGTG-AGTAATAAGGCTTTTG
* * * * *
3094 AAGGTACGAGTGACTATAAATAAACTTTTCATGCAAATGAATACT
126 AAGGTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
** * *
3139 TTTTTCTTCATATTTCTTAAGGTAGAAATTCAATTCTAGTCTATTTTAACCAAAAATGTACAAAG
1 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGTA-AAA-
* * * *
3204 AATTCAA-ATGTAAATCAATTTTGAGATTATAAAACCAGTTAAAGTGAGTAATAAGGCTTTTGAA
64 AATTCAACCT-AAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
** * * * * **
3268 -AAATGGGTGACTATAAATGGATTTTTCTTGCTAATGAATATT
128 GGTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
** * * * * *
3310 TTTTTCTTCATTTTTCCCAAGAG-AAACATTCAATTCTAG-CTGTTTTAACAAAAAATATAAAAA
1 TTTTTCTTCACGTTTCTCAAG-GTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGT-AAAA
* * * *
3373 AATTCAACCTAAAATCAATTATG-GCGTTATAAAACTATTTAAGGTGAGTAATAAAGCTTTTTGA
64 AATTCAACCTAAAATCAATTATGAG-ATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTTGA
*
3437 AGGTATGGGTGACTATAAATAGAC-TTTCTTGCCAATGAATGCT
127 AGGTATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
* * * * * *
3480 TTTTTCTTCATGTTTCTAAAGGAAGACATTCAATTATAGTCTATTTTATCCAAAAAAGTAAAAAT
1 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGTAAAAA-
* *
3545 ATTCAACCTAAAATCAATTATGATATTATAAAACTATTTAAAGTGAGTAATAAGGCGTTTTGAAG
65 ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTTGAAG
* * *
3610 GTAT-AGGTGACTATAATTAGATTTTTCTTGCCAATGAATGCA
129 GTATGA-GTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
** * *
3652 TTTTTCTTCACGTTTCAGAAGGTAGACATTCAATTAC-AGTCTATTTTATCCAAAAATATAAAAA
1 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATT-CTAGTCTATTTTAACCAAAAATGTAAAAA
* * * ** *
3716 TATTCAACCTAAAATCAATTATGACATTACAAAACTATTTAAAGCAAGTAATAAGGCTTTTTAAA
65 -ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTTTGAA
*
3781 GGTAT-AGGTGACTATAATTAGACTTTTCTTGCCAATGAATGCT
128 GGTATGA-GTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
* * ** *
3824 TGTTTCTTTACGTTTCTCAAGGTAGACATTCAATTCTAGTC-AGTTTTAATAAAAAATTTAAAAA
1 TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTCTAGTCTA-TTTTAACCAAAAATGTAAAAA
* * * * ** * *
3888 CGTTTAACCTAAAATCAATTTTAAGATTATAAAACCATTTAAAGCAAGTAGTAAGGCTTTCGAAG
65 -ATTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
* **
3953 GCT-TGAGCGACTATAAAT-GAACTTTT-TATGCCAATGGTTGGC-
129 G-TATGAGTGACTATAAATAG-ACTTTTCT-TGCCAATGAAT-GCT
3995 TTTTTCTTCACGTT
1 TTTTTCTTCACGTT
4009 CCCTATGATA
Statistics
Matches: 868, Mismatches: 138, Indels: 68
0.81 0.13 0.06
Matches are distributed among these distances:
168 11 0.01
169 162 0.19
170 90 0.10
171 230 0.26
172 364 0.42
173 11 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (170 bp):
TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTCTAGTCTATTTTAACCAAAAATGTAAAAAA
TTCAACCTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGT
ATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCT
Done.