Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397974.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_128.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21303

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138--669
172
3.1
166
80
8
586
38
12
13
36
1.82
1223--1847
171
3.7
169
79
6
600
37
14
10
37
1.81
1223--1847
341
1.8
341
79
4
724
37
14
10
37
1.81
2176--2589
171
2.4
170
82
6
507
37
13
14
35
1.85
5441--6716
171
7.5
169
75
4
798
35
12
9
38
1.76
7126--7600
172
2.8
160
77
11
382
37
12
12
34
1.82
6823--7924
171
6.5
171
73
7
736
36
11
12
35
1.80
8379--8758
170
2.2
170
82
3
444
38
10
15
36
1.82
11629--12399
171
4.5
170
76
5
727
35
12
10
39
1.79
12641--12757
58
2.0
58
98
0
225
29
1
11
58
1.43
12645--12737
29
3.2
29
65
22
77
32
1
9
56
1.39
12473--12889
228
1.8
226
86
1
609
35
10
10
41
1.74
13175--13828
339
1.9
332
78
8
689
36
11
11
36
1.79
13100--13898
171
4.7
170
76
6
672
36
12
11
36
1.81
14147--14788
169
3.8
166
78
4
525
35
13
9
37
1.78
15009--15391
170
2.2
171
79
5
398
38
13
12
35
1.82
17366--17728
170
2.2
164
82
4
433
37
12
11
38
1.79
17831--19016
171
7.0
171
74
5
625
36
11
12
35
1.80
18251--19016
169
4.5
171
76
6
447
36
12
12
36
1.81
19117--19725
170
3.6
170
80
4
660
39
11
13
35
1.80
19866--21303
171
8.4
170
70
5
738
38
10
12
34
1.77

Tables:   1

The End!