Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397982.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1287.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1960
ACGTcount: A:0.21, C:0.09, G:0.08, T:0.23

Warning! 765 characters in sequence are not A, C, G, or T


Found at i:598 original size:171 final size:172

Alignment explanation


    Indices: 309--662  Score: 487
    Period size: 171  Copynumber: 2.1  Consensus size: 172

        299 CCTATTCCTC

                      *       *                                              
        309 TAAATGGTTTCATAATCTCATAATTAAATTTAAGTTCAATTTTTTTTATATTTTTCATTAAAACA
          1 TAAATGGTTTTATAATCTAATAATTAAATTTAAGTTCAATTTTTTTTATATTTTTCATTAAAACA

            *  *              *    *                                         
        374 GACTATAATTGAATGTCTGCCTTGAGAAAAGTGAAGAAAGAAGCATTCATTGGCAAGAAAAGTCT
         66 AACAATAATTGAATGTCTACCTTAAGAAAAGTGAAGAAAGAAGCATTCATTGGCAAGAAAAGTCT

                 *    * *            *           *    
        439 ATTTATAGCCTCTCATTCCTTCAAAGGCCTTATTACTTGCTT
        131 ATTTACAGCCACCCATTCCTTCAAAAGCCTTATTACTCGCTT

                                       *        *                  *         
        481 TAAATGGTTTTATAATCTAATAATTAATTTTAAGTTGAA-TTTTTTTATATTTTTGATTAAAACA
          1 TAAATGGTTTTATAATCTAATAATTAAATTTAAGTTCAATTTTTTTTATATTTTTCATTAAAACA

                        *      *         *   *    *     *                    
        545 AACAATAATTGACTGTCTATCTTAAGAAACGTGCAG-ATGAAAGTATTCATTGGCAAGAAAAGTC
         66 AACAATAATTGAATGTCTACCTTAAGAAAAGTGAAGAAAG-AAGCATTCATTGGCAAGAAAAGTC

                     *                   *             
        609 TATTTACAGTCACCCATTCCTTCAAAAGCTTTATTACTCGCTT
        130 TATTTACAGCCACCCATTCCTTCAAAAGCCTTATTACTCGCTT

                       
        652 TAAATGGTTTT
          1 TAAATGGTTTT

        663 CNNNNNNNNN


Statistics
Matches: 159,  Mismatches: 22, Indels: 3
        0.86            0.12        0.02

Matches are distributed among these distances:
 170    2  0.01
 171  122  0.77
 172   35  0.22

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39


Consensus pattern (172 bp):   
TAAATGGTTTTATAATCTAATAATTAAATTTAAGTTCAATTTTTTTTATATTTTTCATTAAAACA
AACAATAATTGAATGTCTACCTTAAGAAAAGTGAAGAAAGAAGCATTCATTGGCAAGAAAAGTCT
ATTTACAGCCACCCATTCCTTCAAAAGCCTTATTACTCGCTT
Done.