Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397989.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1294.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1403
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.22

Warning! 582 characters in sequence are not A, C, G, or T


Found at i:315 original size:172 final size:168

Alignment explanation


    Indices: 2--345  Score: 445
    Period size: 172  Copynumber: 2.0  Consensus size: 168

          1 A

                          *   *   *                                          
          2 ATTTTAAGTTGAATTTTTTTACGTTTTTAGTTAAAACAGACTATAATTGAATGCTACCTTAAGAA
          1 ATTTTAAGTTGAATCTTTGTACATTTTTAGTTAAAACAGACTATAATTGAATGCTACCTTAAGAA

                        *                     *                     *********
         67 ACATAAAAAAAGGCATTCATTGGTAAGAAAAGTCTATTTATAGTCACCCATTCCATNNNNNNNNN
         66 ACATAAAAAAAGCCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCATCAAAAGGCT

            *                                     
        132 NATTACTCACTTTAAATGGTTTGATAATCTCAAAATTG
        131 TATTACTCACTTTAAATGGTTTGATAATCTCAAAATTG

                   *                      *          *             *      *  
        170 ATTTTAATTTGAATCCTTTGTACATTTTTATTTAAAACAGATTATAATTGAATGTTTACCTTGAG
          1 ATTTTAAGTTGAAT-CTTTGTACATTTTTAGTTAAAACAGACTATAATTGAATG-CTACCTTAAG

                *                                              *    *        
        235 AAACGTAAAGAAAAAGCCATTCATTGGTAAGAAAAGTCCATTTATAGTCACTCATTGCATCAAAA
         64 AAACAT-AA-AAAAAGCCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCATCAAAA

                                                      
        300 GGCTTATTACTCACTTTAAATGGTTTGATAATCTCAAAATTG
        127 GGCTTATTACTCACTTTAAATGGTTTGATAATCTCAAAATTG

                
        342 ATTT
          1 ATTT

        346 NNNNNNNNNN


Statistics
Matches: 149,  Mismatches: 23, Indels: 4
        0.85            0.13        0.02

Matches are distributed among these distances:
 168   13  0.09
 169   34  0.23
 170   13  0.09
 171    2  0.01
 172   87  0.58

ACGTcount: A:0.36, C:0.13, G:0.12, T:0.37


Consensus pattern (168 bp):   
ATTTTAAGTTGAATCTTTGTACATTTTTAGTTAAAACAGACTATAATTGAATGCTACCTTAAGAA
ACATAAAAAAAGCCATTCATTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCATCAAAAGGCT
TATTACTCACTTTAAATGGTTTGATAATCTCAAAATTG
Done.