Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397992.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1299.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1663
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.33

Warning! 139 characters in sequence are not A, C, G, or T


Found at i:1653 original size:171 final size:171

Alignment explanation


    Indices: 1312--1660  Score: 412
    Period size: 171  Copynumber: 2.0  Consensus size: 171

       1302 NNNNNNNNNN

                   *                             *    *    *    **          *
       1312 AAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTCTTTTCATTTCTCGAG
          1 AAGGAATAGGTGACTATAAATGGACTTTTCTTGCCAAGGAATACCTTGTCTTAACATTTCTCGAC

                                                  *    *   *                 
       1377 CTAGACATTCAATTATAAAATGTTTTAACGAAAAATGTTAAAATATTTACACTTAAAATCAATTA
         66 CTAGACATTCAATTATAAAATGTTTTAACGAAAAATGTAAAAAAATTGACACTTAAAATCAATTA

                              **********     *       
       1442 TGAGATTATAAAACCATTNNNNNNNNNNAATAATGCTTTTG
        131 TGAGATTATAAAACCATTTAAAGGAAGTAATAAGGCTTTTG

                                                                   *     *   
       1483 AAGGAATAGGTGACTATAAATGGACTTTTCTTGCCAAGGAATACCTTGTCTTAACGTTTCTTGAC
          1 AAGGAATAGGTGACTATAAATGGACTTTTCTTGCCAAGGAATACCTTGTCTTAACATTTCTCGAC

                  *           *          *    *                           *  
       1548 CTAGACCTTCAATTATAATATGTTTTAACTAAAATTGTAAAAAAAATTGA-ACTTAAAATCAGTT
         66 CTAGACATTCAATTATAAAATGTTTTAACGAAAAATGT-AAAAAAATTGACACTTAAAATCAATT

               *          *                           
       1612 ATGTGATTATAAAATCATTTAAAGGAAGTAATAAGGCTTTTG
        130 ATGAGATTATAAAACCATTTAAAGGAAGTAATAAGGCTTTTG

                   
       1654 AAGGAAT
          1 AAGGAAT

       1661 GGG


Statistics
Matches: 147,  Mismatches: 30, Indels: 2
        0.82            0.17        0.01

Matches are distributed among these distances:
 171  139  0.95
 172    8  0.05

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.35


Consensus pattern (171 bp):   
AAGGAATAGGTGACTATAAATGGACTTTTCTTGCCAAGGAATACCTTGTCTTAACATTTCTCGAC
CTAGACATTCAATTATAAAATGTTTTAACGAAAAATGTAAAAAAATTGACACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGGAAGTAATAAGGCTTTTG
Done.