Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397327.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_893.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62161

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7652--8070
171
2.5
171
76
2
430
36
11
11
37
1.79
10184--10657
170
2.8
168
80
5
495
35
13
10
40
1.79
12152--12501
171
2.0
171
81
4
402
39
12
13
34
1.82
15915--16291
171
2.2
170
81
1
432
34
12
12
39
1.82
18438--19072
171
3.7
171
82
4
699
36
13
10
40
1.79
19193--19788
169
3.5
167
77
7
537
35
14
10
39
1.81
21418--22181
171
4.5
169
79
5
790
36
13
10
39
1.80
21418--22188
341
2.3
341
84
3
1014
36
13
10
39
1.80
22887--23193
170
1.8
171
84
2
420
35
13
13
38
1.83
26375--26709
169
2.0
170
85
2
458
38
11
10
39
1.76
26969--27279
171
1.8
171
85
1
435
38
10
15
35
1.82
28201--33212
171
29.4
169
71
5
2422
36
11
13
34
1.80
33365--34785
171
8.4
170
71
7
769
37
11
12
33
1.79
33401--34064
339
2.0
331
79
5
637
36
10
13
34
1.79
33365--34583
510
2.4
506
77
6
1109
37
10
13
34
1.79
37094--37636
171
3.2
167
78
6
511
39
12
12
35
1.81
40613--41587
170
5.7
171
74
6
685
37
11
14
36
1.81
40617--41581
341
2.8
338
83
3
1100
37
11
13
36
1.81
42028--42447
169
2.5
169
83
5
517
40
9
12
37
1.76
43071--43378
169
1.8
171
82
2
406
39
12
12
36
1.81
43833--44489
170
3.9
172
80
5
645
35
14
11
38
1.82
57392--57753
170
2.1
171
81
2
415
38
9
10
39
1.71

Tables:   1

The End!