Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397995.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1301.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2837
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.20

Warning! 1279 characters in sequence are not A, C, G, or T


Found at i:423 original size:171 final size:159

Alignment explanation


    Indices: 169--524  Score: 331
    Period size: 170  Copynumber: 2.2  Consensus size: 159

        159 AAATCCAACT

                           *      *                                       *  
        169 TAAAATCAATTATGATATTATATAATCATGAAACCGAGTAATAAGGCTTTTGAAAGAATAAGTAA
          1 TAAAATCAATTATGAGATTATAAAATCATGAAACCGAGTAATAAGGCTTTTGAAAGAATAAGCAA

                    *  *         *                                *   * *    
        234 CTAAAAATGGATTTTTCTTCTTAATGAATGGCTTTTCATACACGTTACCT-GAGGTAGGCTTTCA
         66 CTAAAAATAGACTTTTCTTCTCAATGAATGGCTTTT-ATACACGTT-CCTCGAGATAGACATTCA

                       *                    
        298 ATTA-TAGTCTGTTTTAACAAAAAATGTAAAA
        129 ATTATTA-TCTATTTTAACAAAAAATGTAAAA

                                                *   *   *                    
        329 NNNNNNNNNNTAAAATCAATTATGAGATTATAAAATTATTTAAAGC-AGTTAATAAGGCTTTTGA
          1 ----------TAAAATCAATTATGAGATTATAAAATCA-TGAAACCGAG-TAATAAGGCTTTTGA

             *    *   *    *                       *        *        *       
        393 AGGAATGAGCGACTATAAATAGACTTTTCTTCTCAATGACTGGCTTTTTTACACGTTTCTCGAGA
         54 AAGAATAAGCAACTAAAAATAGACTTTTCTTCTCAATGAATGGCTTTTATACACGTTCCTCGAGA

                                       *       *    **
        458 TAGACATTCAATTATTATCTATTTTAATAAAAAATTTCAACT
        119 TAGACATTCAATTATTATCTATTTTAACAAAAAATGT-AAAA

                                     
        500 TAAAATCAATTATGAGATTATAAAA
          1 TAAAATCAATTATGAGATTATAAAA

        525 CCATTTAAAC


Statistics
Matches: 157,  Mismatches: 24, Indels: 19
        0.79            0.12        0.09

Matches are distributed among these distances:
 161   25  0.16
 169    2  0.01
 170   67  0.43
 171   63  0.40

ACGTcount: A:0.38, C:0.11, G:0.13, T:0.35


Consensus pattern (159 bp):   
TAAAATCAATTATGAGATTATAAAATCATGAAACCGAGTAATAAGGCTTTTGAAAGAATAAGCAA
CTAAAAATAGACTTTTCTTCTCAATGAATGGCTTTTATACACGTTCCTCGAGATAGACATTCAAT
TATTATCTATTTTAACAAAAAATGTAAAA
Done.