Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398002.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1308.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3255
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.28

Warning! 838 characters in sequence are not A, C, G, or T


Found at i:389 original size:170 final size:172

Alignment explanation


    Indices: 1--391  Score: 423
    Period size: 171  Copynumber: 2.3  Consensus size: 172

                                                                             
          1 AAAGAAAAGTCTATTTATAGCCTCTCATTCCTTAAAAAGCCTTATTACTCGCTTCCAATGGTTTT
          1 AAAGAAAAGTCTATTTATAGCCTCTCATTCCTTAAAAAGCCTTATTACTCGCTTCCAATGGTTTT

            *      *                                    *        ** *        
         66 CTAATCTCATAATTAATTTTAAGTTGAATATTTTTACATTTTGCGTTAAAACAGGCTATAATTGA
         66 ATAATCTAATAATTAATTTTAAGTTGAATATTTTTACATTTTGCATTAAAACAAACAATAATTGA

                * **********  *                       
        131 ATGTTTNNNNNNNNNNAAGTGAAGAAAAAAGCATTCATTGGT
        131 ATGTCTAATTTTAAAAAAATGAAGAAAAAAGCATTCATTGGT

              *                              *     **              *         
        173 -AGGAAAAGTCTATTTATAGCCTCTCATTCCTTTAAAAGAATTATTACTCGCTT-TAGATGGTTT
          1 AAAGAAAAGTCTATTTATAGCCTCTCATTCCTTAAAAAGCCTTATTACTCGCTTCCA-ATGGTTT

                           *            * *             *                    
        236 TATAATCTAATAATTGATTTTAAGTTGAGTTTTTTTACATTTT-TATTAAAACAAACAATAATTG
         65 TATAATCTAATAATTAATTTTAAGTTGAATATTTTTACATTTTGCATTAAAACAAACAATAATTG

                                      *      *          
        300 AATGTCT-ATTTTAAAAAACATGAAGGAAAAAGTATTCATT-GT
        130 AATGTCTAATTTTAAAAAA-ATGAAGAAAAAAGCATTCATTGGT

                       *   *    * *          *                
        342 AAAGAAAAGTCCATTCATAGTCACTCATTCCTTCAAAAGCCTTATTACTC
          1 AAAGAAAAGTCTATTTATAGCCTCTCATTCCTTAAAAAGCCTTATTACTC

        392 NNNNNNNNNN


Statistics
Matches: 180,  Mismatches: 36, Indels: 8
        0.80            0.16        0.04

Matches are distributed among these distances:
 169    4  0.02
 170   82  0.46
 171   94  0.52

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.37


Consensus pattern (172 bp):   
AAAGAAAAGTCTATTTATAGCCTCTCATTCCTTAAAAAGCCTTATTACTCGCTTCCAATGGTTTT
ATAATCTAATAATTAATTTTAAGTTGAATATTTTTACATTTTGCATTAAAACAAACAATAATTGA
ATGTCTAATTTTAAAAAAATGAAGAAAAAAGCATTCATTGGT
Done.