Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398011.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1317.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2816
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1940 original size:17 final size:19

Alignment explanation


    Indices: 1918--1953  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       1908 TATTTGATAA

                               
       1918 ATAAAA-TAAAACT-ATTT
          1 ATAAAATTAAAACTCATTT

                               
       1935 ATAAAATTAAAACTCATTT
          1 ATAAAATTAAAACTCATTT

       1954 CATATTTTAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    6  0.35
  18    7  0.41
  19    4  0.24

ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36


Consensus pattern (19 bp):   
ATAAAATTAAAACTCATTT

Done.