genome.fa.s78.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397331.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1088.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55563

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373--1704	172	2.0	160	81	3	308	36	12	12	35	1.81
962--2157	171	7.0	167	72	8	621	38	12	12	34	1.81
2390--4262	171	10.9	171	78	4	1495	37	11	12	35	1.80
2394--4262	343	5.5	339	76	5	1255	37	11	12	35	1.80
4645--5489	171	4.9	167	75	7	640	37	12	12	35	1.81
5603--9345	172	21.8	170	72	7	1907	37	11	12	34	1.80
5603--9345	171	21.8	171	72	7	1994	37	11	12	34	1.80
5603--9345	343	10.9	340	72	7	1934	37	11	12	34	1.80
10345--11255	172	5.3	170	76	3	720	38	10	12	35	1.79
10341--11255	341	2.7	338	79	3	879	38	11	12	35	1.79
11359--12968	171	9.5	171	74	6	1017	35	12	11	37	1.80
11362--12737	343	4.0	336	72	11	917	35	12	11	37	1.80
13033--13930	172	5.2	171	76	3	583	35	12	11	36	1.78
16662--17938	172	7.4	169	74	6	747	35	12	11	35	1.81
17143--17938	173	4.6	171	77	6	723	37	13	11	37	1.80
18403--18779	175	2.2	172	80	5	429	38	11	12	37	1.80
18403--19041	173	3.7	171	77	8	474	38	11	12	37	1.80
20816--21603	172	4.6	173	72	6	447	38	11	12	34	1.79
22701--23189	172	2.8	172	82	3	513	37	11	12	35	1.80
22422--25119	171	15.8	169	70	6	1359	36	11	12	35	1.79
24294--25119	343	2.4	332	77	7	723	37	11	11	36	1.79
25534--26921	171	8.2	171	72	9	756	38	11	11	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27675--27993	172	1.9	171	81	7	396	36	10	14	38	1.81
28535--28856	171	1.9	168	83	4	414	39	12	13	35	1.82
28535--29627	172	6.4	169	74	4	683	37	11	12	35	1.80
29732--30232	172	2.9	171	83	3	609	36	12	13	36	1.83
32043--32370	173	2.0	162	86	3	381	36	12	12	35	1.81
31721--32984	172	7.4	170	75	4	774	37	11	12	34	1.80
32404--32984	170	3.4	169	78	5	492	39	11	13	34	1.80
33550--33588	19	2.0	19	85	5	51	30	15	5	48	1.66
33498--33804	170	1.8	171	82	2	402	38	11	11	38	1.78
34093--34914	171	4.8	169	78	4	675	39	11	11	36	1.79
36900--37648	172	4.4	169	77	8	620	41	10	12	35	1.78
36891--37664	343	2.3	341	79	5	801	41	10	12	35	1.78
38153--39348	171	7.0	168	79	8	1067	39	12	12	35	1.80
38153--39358	172	7.0	170	79	6	1111	39	12	12	35	1.80
38153--39348	343	3.5	339	81	6	1324	39	12	12	35	1.80
41148--41467	172	1.9	162	83	5	335	40	9	11	35	1.75
43935--45374	172	8.4	172	69	6	519	37	10	13	34	1.79
46795--47112	171	1.9	162	77	12	324	38	11	12	34	1.79
46796--47628	172	4.9	169	75	6	543	38	10	12	34	1.78
46810--47454	344	1.9	333	80	4	663	38	11	12	34	1.78
48142--48528	173	2.3	169	82	4	472	38	12	14	35	1.83
48142--48620	170	2.8	168	78	6	415	36	11	13	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49576--50051	172	2.8	170	79	3	443	39	8	11	37	1.73
51110--52156	171	6.1	169	75	4	746	35	11	14	34	1.82
51110--51858	342	2.2	343	81	4	879	36	12	14	36	1.83
52247--52716	173	2.8	168	79	4	492	36	11	13	35	1.82

Tables:   1

The End!