Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398043.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1351.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.19, C:0.05, G:0.08, T:0.18

Warning! 1012 characters in sequence are not A, C, G, or T


Found at i:296 original size:170 final size:159

Alignment explanation


    Indices: 1--305  Score: 326
    Period size: 170  Copynumber: 1.8  Consensus size: 159

                           *                                      *    *     
          1 AGGCAGACACTCAATTATAGTCTGTTTTAAAAAATATGTAAAAAAATTAAAATTTAAATTAATTA
          1 AGGCAGACACTCAATGATAGTCTGTTTTAAAAAATATGTAAAAAAATTAAAATTAAAATAAATTA

                                            *                **  *           
         66 TGAGATTATAAAACCATTTAGAACGAGTAAAATGGCTGTTAAAGGAATGGGAGGCTATAAATGAA
         66 TGAGATTATAAAACCATTTAGAACGAGTAAAAAGGCTGTTAAAGGAATGAAAGACTATAAATGAA

                                                   
        131 CTTTTTTATCAGTGAATGCTTTTTTCNNNNNNNNNNTTG
        131 CTTTTTTATCAGTGAATGCTTTTTTC----------TTG

                     *                                *  * *  *  *           
        170 AGGCAGACATTCAATGATAGTCTGTTTTAATGAAAA-ATGTACAATACTTCAACTTAAAATAAAT
          1 AGGCAGACACTCAATGATAGTCTGTTTTAA--AAAATATGTAAAAAAATTAAAATTAAAATAAAT

                                                    *  *     *               
        234 TATGAGATTATAAAACCATTTA-AAGCGAGTAAAAAGGCTTTTGAAGGAGTGAAAGACTATAAAT
         64 TATGAGATTATAAAACCATTTAGAA-CGAGTAAAAAGGCTGTTAAAGGAATGAAAGACTATAAAT

             *      
        298 GGACTTTT
        128 GAACTTTT

        306 CTTGCCCATG


Statistics
Matches: 116,  Mismatches: 17, Indels: 5
        0.84            0.12        0.04

Matches are distributed among these distances:
 169   30  0.26
 170   82  0.71
 171    4  0.03

ACGTcount: A:0.40, C:0.09, G:0.16, T:0.31


Consensus pattern (159 bp):   
AGGCAGACACTCAATGATAGTCTGTTTTAAAAAATATGTAAAAAAATTAAAATTAAAATAAATTA
TGAGATTATAAAACCATTTAGAACGAGTAAAAAGGCTGTTAAAGGAATGAAAGACTATAAATGAA
CTTTTTTATCAGTGAATGCTTTTTTCTTG
Done.