Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398046.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1355.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2315
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.23

Warning! 878 characters in sequence are not A, C, G, or T


Found at i:2264 original size:20 final size:21

Alignment explanation


    Indices: 2226--2266  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2216 TATAGTCTAT

                 *               
       2226 TTTAATAAAAATATATAAAAA
          1 TTTAACAAAAATATATAAAAA

                          *      
       2247 TTTAACAAAAA-ATGTAAAAA
          1 TTTAACAAAAATATATAAAAA

       2267 ATGTAAAAAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    8  0.44
  21   10  0.56

ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29


Consensus pattern (21 bp):   
TTTAACAAAAATATATAAAAA
Done.