Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398061.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1369.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 915

Length: 1526
ACGTcount: A:0.26, C:0.10, G:0.11, T:0.28

Warning! 395 characters in sequence are not A, C, G, or T


Found at i:1183 original size:171 final size:161

Alignment explanation


    Indices: 898--1342  Score: 550
    Period size: 171  Copynumber: 2.6  Consensus size: 161

        888 NNNNNNNNNN

                                                                             
        898 AAAGCGAGTAATAAGGCTTTTGAAGTCATGGGTGACTATAATTAGACTTTTCTTGCCAATAGATA
          1 AAAGCGAGTAATAAGGCTTTTGAAGTCATGGGTGACTATAATTAGACTTTTCTTGCCAATAGATA

                                                  *            *         *  *
        963 CCTTTTTCTTCATATTTCCTGAGGAAGACATTCAATTATTATCTGTTTTAATGAAAAACGTGAAC
         66 CCTTTTTCTTCATATTTCCTGAGGAAGACATTCAATTAATATCTGTTTTAACGAAAAACGTAAAA

                                           
       1028 AAATTCAATTTAAAATCAATTATGAGATTAT
        131 AAATTCAATTTAAAATCAATTATGAGATTAT

                                           *                                 
       1059 NNNNNNNNNNAAAGCGAGTAATAAGGCTTTTAAAGTCATGGGTGACTATAATTAGACTTTTCTTG
          1 ----------AAAGCGAGTAATAAGGCTTTTGAAGTCATGGGTGACTATAATTAGACTTTTCTTG

             *                            *                                  
       1124 CAAATAGATACCTTTTTCTTCATATTTCCTAAGGAAGACATTCAATTAATA-CTTGTTTTAACGA
         56 CCAATAGATACCTTTTTCTTCATATTTCCTGAGGAAGACATTCAATTAATATC-TGTTTTAACGA

                                                      
       1188 AAAACGTAAAAAAATTCAATTTAAAATCAATTATGAGATTAT
        120 AAAACGTAAAAAAATTCAATTTAAAATCAATTATGAGATTAT

                                                **             * *        *  
       1230 NNNNNNNNNNAAAGCGAGTAATAAGGCTTTTGAAGTTGTGGGTGACTATAAATGGACTTTTCCTG
          1 ----------AAAGCGAGTAATAAGGCTTTTGAAGTCATGGGTGACTATAATTAGACTTTTCTTG

                 *    *            *          *             
       1295 CCAATGGATATCTTTTTCTTCATGTTTCCTGAGGCAGACATTCAATTA
         56 CCAATAGATACCTTTTTCTTCATATTTCCTGAGGAAGACATTCAATTA

       1343 TTATNNNNNN


Statistics
Matches: 254,  Mismatches: 19, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
 170    1  0.00
 171  253  1.00

ACGTcount: A:0.33, C:0.13, G:0.15, T:0.34


Consensus pattern (161 bp):   
AAAGCGAGTAATAAGGCTTTTGAAGTCATGGGTGACTATAATTAGACTTTTCTTGCCAATAGATA
CCTTTTTCTTCATATTTCCTGAGGAAGACATTCAATTAATATCTGTTTTAACGAAAAACGTAAAA
AAATTCAATTTAAAATCAATTATGAGATTAT
Done.