Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398066.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1375.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1935
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.26

Warning! 692 characters in sequence are not A, C, G, or T


Found at i:1237 original size:169 final size:169

Alignment explanation


    Indices: 848--1306  Score: 438
    Period size: 169  Copynumber: 2.7  Consensus size: 169

        838 NNNNNNNNNN

                     *                   *  **  * *       *       *  * * *   
        848 TTTATAGTCTCCCATTCCTTCAAAAGCCTTATTGCTCGCTTTAAATAGTTTTATCATGTTATAAT
          1 TTTATAGTCACCCATTCCTTCAAAAGCCTAATAACTTGTTTTAAATGGTTTTATAATCTCAAAAT

                                            *                 *   *       *  
        913 TGATTTTAAGTTAAATTTTTTTACATTTTTGGATAAAATAGATTATAATTAAATATCTACCTTGA
         66 TGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAA-A-ATTATAATTGAATGTCTACCTGGA

                             *             * *       
        978 GAAAAGTGAAGAGAAAGCTATTCATTGGCAAGAGAAGTCCA
        129 GAAAAGTGAAGAGAAAGATATTCATTGGCAAAAAAAGTCCA

                                         * **********           *            
       1019 TTTATAGTCACCCATTCCTTCAAAAGCCTTANNNNNNNNNNTAAATGGTTTTGTAATCTCAAAAT
          1 TTTATAGTCACCCATTCCTTCAAAAGCCTAATAACTTGTTTTAAATGGTTTTATAATCTCAAAAT

                        *          *     *                           *    *  
       1084 TGATTTTAAGTTTAATTTTTTTATATTTTGGGTTAAAAAATTATAATTGAATGTCTATCTGGTGA
         66 TGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAAAATTATAATTGAATGTCTACCTGGAGA

              *            *     *                 *
       1149 AACGTGAAG-GAAAATATATTTATTGGCAAAAAAAGTCCG
        131 AAAGTGAAGAG-AAAGATATTCATTGGCAAAAAAAGTCCA

                                                       *                  *  
       1188 TTTATAGTCA-CCATTTCCTTCAAAAGCCTAATAACTTGTTTTTAATGGTTTTATAATCTCATAA
          1 TTTATAGTCACCCA-TTCCTTCAAAAGCCTAATAACTTGTTTTAAATGGTTTTATAATCTCAAAA

                         **   *                        *            
       1252 TTGATTTTAAGTTGGA-TATTTTACATTTTTGGTTAAAACAAACTATAATTGAATG
         65 TTGATTTTAAGTTAAATTTTTTTACATTTTTGGTT-AAA-AAATTATAATTGAATG

       1307 CNNNNNNNNN


Statistics
Matches: 231,  Mismatches: 53, Indels: 9
        0.79            0.18        0.03

Matches are distributed among these distances:
 168   19  0.08
 169  114  0.49
 170   16  0.07
 171   82  0.35

ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40


Consensus pattern (169 bp):   
TTTATAGTCACCCATTCCTTCAAAAGCCTAATAACTTGTTTTAAATGGTTTTATAATCTCAAAAT
TGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAAAATTATAATTGAATGTCTACCTGGAGA
AAAGTGAAGAGAAAGATATTCATTGGCAAAAAAAGTCCA
Done.