Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398068.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1377.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1684
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.22

Warning! 757 characters in sequence are not A, C, G, or T


Found at i:565 original size:11 final size:12

Alignment explanation


    Indices: 538--566  Score: 58
    Period size: 12  Copynumber: 2.4  Consensus size: 12

        528 GCCTATCTTC

                        
        538 AAAAACGTGTAG
          1 AAAAACGTGTAG

                        
        550 AAAAACGTGTAG
          1 AAAAACGTGTAG

                 
        562 AAAAA
          1 AAAAA

        567 GCCATTCATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.59, C:0.07, G:0.21, T:0.14


Consensus pattern (12 bp):   
AAAAACGTGTAG
Done.