Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398069.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1378.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18304
ACGTcount: A:0.27, C:0.09, G:0.08, T:0.27
Warning! 5202 characters in sequence are not A, C, G, or T
Found at i:6420 original size:171 final size:168
Alignment explanation
Indices: 6243--6732 Score: 430
Period size: 170 Copynumber: 2.9 Consensus size: 168
6233 NNNNNNNNAT
*
6243 AATCTCATAATTCATTTTAAGTTGAATTGTTTTACATTTTTTGTTAAAAAAGACAATAATTGAAT
1 AATCTCATAATTGATTTTAAGTTGAA-TGTTTTACATTTTTTGTTAAAAAAGACAATAATTGAAT
* * *
6308 GCTTGGCTTGAGAAACATGCAAAAAAAGCTATACATTGAGAAAAAAAGTCCATTTATAACCACCC
65 GCTT-CCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAAAAAGTCCATTTATAA-CACCC
* *
6373 ATTCCTTCAAAAGTCTTATAACTCGCTTTAAATTGTCTTAC
128 ATTCCTTCAAAAGCCTTATAACTCGCTCTAAATTGTCTTAC
********** * * *
6414 AATCTCATAATTGATTTTAAGTTGAANNNNNNNNNNTTTTTGTTAAAACAGATAATAATTGACTG
1 AATCTCATAATTGATTTTAAGTTGAATGTTTTACATTTTTTGTTAAAAAAGACAATAATTGAATG
* * * *********
6479 TTTACCTCAAGAAACATG-AACAAAAAGGC-ATTCATTG-GCAAGAAAAGTCNNNNNNNNNNCAC
66 CTT-CCTTAAGAAACATGCAA-AAAAA-GCTATTCATTGAG-AAAAAAAGTC-CATTTATAACAC
* * * *
6541 CCATTCCTTTAAAAGCCTTATTACTCGCTCTAAATTGTTTTAT
126 CCATTCCTTCAAAAGCCTTATAACTCGCTCTAAATTGTCTTAC
* * * * * * *
6584 AATCCCAAAAGTGATTTTGAGTTGAATGTTTTTACATTTATGGTTAAAACAA-ACTATAATTGAA
1 AATCTCATAATTGATTTTAAGTTGAATG-TTTTACATTTTTTGTTAAAA-AAGACAATAATTGAA
* ** *
6648 TGCCTTCCTTTAGAAACATGCAAAAAAATTTATTCATTGAGAAAAAAAGTCTATTTATAGACACC
64 TG-CTTCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAAAAAGTCCATTTATA-ACACC
6713 CATTCCTTCAAAAGCCTTAT
127 CATTCCTTCAAAAGCCTTAT
6733 NNNNNNNNNN
Statistics
Matches: 236, Mismatches: 72, Indels: 22
0.72 0.22 0.07
Matches are distributed among these distances:
169 3 0.01
170 122 0.52
171 105 0.44
172 6 0.03
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.33
Consensus pattern (168 bp):
AATCTCATAATTGATTTTAAGTTGAATGTTTTACATTTTTTGTTAAAAAAGACAATAATTGAATG
CTTCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAAAAAGTCCATTTATAACACCCATT
CCTTCAAAAGCCTTATAACTCGCTCTAAATTGTCTTAC
Found at i:7038 original size:170 final size:172
Alignment explanation
Indices: 6862--7250 Score: 399
Period size: 170 Copynumber: 2.3 Consensus size: 172
6852 TTATTGGGAA
* * **********
6862 AAAAGTCTATTTACAGTCACCCATTCCTTCAAAAGCCTTATTACTCGNNNNNNNNNNTTTTATAA
1 AAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTCAAATTATTTTATAA
* * * * **
6927 TCTCATAATTAATTTTAAGTTGAA-TTGTTTTATA-TTTTTGACTAAAATAGACTATAATTGAAT
66 TCTCAGAATTAATTTTAAGTTGAATTTGTTTTACACCTTTTG-CTAAAACAGAAAATAATTGAAT
* * * *
6990 TTTTACTTGGAGAAACGTGAAG-AAAATACATTC-TTTAGCAAG
130 TTTTACTTGGAGAAACGGGAAGAAAAACACATCCGTGT-GCAAG
********** * *
7032 AAAAGTCCATTTATAGTCNNNNNNNNNNTCAAAATCTTTATTACTCGCTTCAAATTATTTTATAA
1 AAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTCAAATTATTTTATAA
* *
7097 TCTCAGAATTTATTTTAAGTTGAATTTTTTTTACACCTTTTGCTAAAACAGAAAATAATTGAATT
66 TCTCAGAATTAATTTTAAGTTGAATTTGTTTTACACCTTTTGCTAAAACAGAAAATAATTGAATT
7162 TTTACTTGGAGAAACGGGAAGAAAAACACATCCGTGTGCAAG
131 TTTACTTGGAGAAACGGGAAGAAAAACACATCCGTGTGCAAG
*
7204 AAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCG
1 AAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCG
7251 TTNNNNNNNN
Statistics
Matches: 167, Mismatches: 48, Indels: 6
0.76 0.22 0.03
Matches are distributed among these distances:
170 63 0.38
171 48 0.29
172 54 0.32
173 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.36
Consensus pattern (172 bp):
AAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCGCTTCAAATTATTTTATAA
TCTCAGAATTAATTTTAAGTTGAATTTGTTTTACACCTTTTGCTAAAACAGAAAATAATTGAATT
TTTACTTGGAGAAACGGGAAGAAAAACACATCCGTGTGCAAG
Found at i:7639 original size:172 final size:160
Alignment explanation
Indices: 7353--7812 Score: 370
Period size: 172 Copynumber: 2.7 Consensus size: 160
7343 NNNNNNNNNN
* * * *
7353 TAAAACAGACTATAATTGAATGCCTGCCTTCAGAAATCCAT-AAAAAAAATC-ATTTATTGAGAA
1 TAAAACAGACTATAATTGAATGCTTGCCTTAAGAAA--CATGCAAAAAAATCTATTCATTGAGAA
* * **
7416 AAAAAATTGATTTATAGTCACCCATTCCTTCAAAAGCCATATTACTCACTTTAANNNNNNNNNNA
64 GAAAAATTGATTTATAGTCACCCAGTCCTTCAAAAGCCATATTACTCACTTTAA--------ATA
*
7481 ATCTCATAATTGATTTTAAGATGAATTTTTTTTACATTTTTT
121 ATCTCATAATTCATTTTAAGATGAA-TTTTTTTAC-TTTTTT
* *
7523 GCTAAAACAGACTATAATTGAATGCTTGCCTTAAGAAACTTGCAAAAATATCTATTCATTGAGAA
1 --TAAAACAGACTATAATTGAATGCTTGCCTTAAGAAACATGCAAAAAAATCTATTCATTGAGAA
* * * * **
7588 GAAAAGTCT-ATTTATTGTCACCTAGTCCTTCAAAAGCCTTATTACTCACTTTNNNNNNNNNNAT
64 GAAAAAT-TGATTTATAGTCACCCAGTCCTTCAAAAGCCATATTACTCACTTT--------AAAT
*
7652 AATCTCATAATTCATTTTAAGTTGAATTTTTTTACTTTTTT
120 AATCTCATAATTCATTTTAAGATGAATTTTTTTACTTTTTT
* * * *
7693 TAAAAACAGA-TAATATTTGAATGCTTGCCTTGAGAAACGTGCAAAAAAAGCTATTCATTGAGAA
1 T-AAAACAGACT-ATAATTGAATGCTTGCCTTAAGAAACATGCAAAAAAATCTATTCATTGAGAA
* ** * * * * * * * *
7757 GAAACATCCATTTATAGCCACACATTCTTTCAAAAGTCTTATAACTCGCTTTAAAT
64 GAAAAATTGATTTATAGTCACCCAGTCCTTCAAAAGCCATATTACTCACTTTAAAT
7813 TGTCTTATAA
Statistics
Matches: 237, Mismatches: 37, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
161 2 0.01
168 2 0.01
169 94 0.40
170 8 0.03
171 17 0.07
172 113 0.48
173 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.35
Consensus pattern (160 bp):
TAAAACAGACTATAATTGAATGCTTGCCTTAAGAAACATGCAAAAAAATCTATTCATTGAGAAGA
AAAATTGATTTATAGTCACCCAGTCCTTCAAAAGCCATATTACTCACTTTAAATAATCTCATAAT
TCATTTTAAGATGAATTTTTTTACTTTTTT
Found at i:8292 original size:171 final size:170
Alignment explanation
Indices: 7353--8313 Score: 711
Period size: 169 Copynumber: 5.6 Consensus size: 170
7343 NNNNNNNNNN
* * * *
7353 TAAAACAGACTATAATTGAATGCCTGCCTTCAGAAATCCAT-AAAAAAAATC-ATTTATTGAGAA
1 TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAA--CATGCAAAAAAAGCTATTCATTGAGAA
* * **********
7416 AAAAAAT-TGATTTATAGTCACCCATTCCTTCAAAAGCCATATTACTCACTTTAANNNNNNNNNN
64 AAAAAGTCT-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTAT
* * *
7480 AATCTCATAATTGATTTTAAGATGAATTTTTTTTACATTTTTTGC
128 AATCTCATAATTGATTTTAAGTTGAA-TTTTTTTA-TTTTTTTGT
* * * * *
7525 TAAAACAGACTATAATTGAATGCTTGCCTTAAGAAACTTGCAAAAATATCTATTCATTGAGAAGA
1 TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAA
* * * **********
7590 AAAGTCTATTTATTGTCACCTAGTCCTTCAAAAGCCTTATTACTCACTTTNNNNNNNNNNATAAT
66 AAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAAT
* *
7655 CTCATAATTCATTTTAAGTTGAATTTTTTTACTTTTTT-T
131 CTCATAATTGATTTTAAGTTGAATTTTTTTATTTTTTTGT
* * * * *
7694 AAAAACAGA-TAATATTTGAATGCTTGCCTTGAGAAACGTGCAAAAAAAGCTATTCATTGAGAAG
1 TAAAACAGACT-ATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAA-
* * * * * * * * *
7758 AAACA-TCCATTTATAGCCACACATTCTTTCAAAAGTCTTATAACTCGCTTTAAATTGTCTTATA
64 AAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATA
* ********** *
7822 ATCTCATAATTGATTTTAAGTTAAANNNNNNNNNNTTTTGGT
129 ATCTCATAATTGATTTTAAGTTGAATTTTTTTATTTTTTTGT
* * *** * * * *
7864 TAAAACAGACAATAATTGACTATTTACCTCAAGAAACAAGAAAAAAAAGGC-ATTCATTG-GCAA
1 TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAA-GCTATTCATTGAG-AA
*
7927 AAAAAGTCTATTTATAGTCACCCATTCCTT-TAAAGCCTTATTACTCACTTTAAATTGTTTTA-A
64 AAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATA
* * *********
7990 ATC-CAAAAATTGATTTTGAGTTGAATTTTTTNNNNNNNNNNGT
129 ATCTC-ATAATTGATTTTAAGTTGAATTTTTT-TATTTTTTTGT
* * * **
8033 TAAAACAAACTATAATTGAATGCCTTCCTTCAGAAACATGCAAAAAAATTTATTCATTGAGAAAA
1 TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAA
*********** * *
8098 AAAGTCCNNNNNNNNNNACCCATTCCTTCAAAAGCCTTATTACTCACTTGAAATTATTTTATAAT
66 AAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAAT
* * * *
8163 ATCATAATTAATTTTAAGTTGAATTTTTGTATGTTTTTTAT
131 CTCATAATTGATTTTAAGTTGAATTTTTTTAT-TTTTTTGT
* * * * *
8204 TAAAACAGACTATAATTGAATGCCTACCTTGAGAAACATGTAAAAAAAGCTACTCATTTAGAAAA
1 TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAA
*
8269 AAAGTCTATTTACAGTCACCCATTCCTTCAAAAGCCTTATTACTC
66 AAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTC
8314 GCTNNNNNNN
Statistics
Matches: 613, Mismatches: 158, Indels: 37
0.76 0.20 0.05
Matches are distributed among these distances:
167 1 0.00
168 22 0.04
169 225 0.37
170 107 0.17
171 135 0.22
172 122 0.20
173 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.34
Consensus pattern (170 bp):
TAAAACAGACTATAATTGAATGCCTGCCTTAAGAAACATGCAAAAAAAGCTATTCATTGAGAAAA
AAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAAT
CTCATAATTGATTTTAAGTTGAATTTTTTTATTTTTTTGT
Found at i:9454 original size:170 final size:171
Alignment explanation
Indices: 9243--9556 Score: 429
Period size: 170 Copynumber: 1.8 Consensus size: 171
9233 TATTACCCGC
* *
9243 TTTAAATTATTTTATAATCTCATATTAGATTTTAAGTTGAATGTTTTT-ACATTTTTGGCTAAGA
1 TTTAAATTATTTTATAATCTCATATTAGATTTTAAGTTGAAT-TTTTTCACATTTTTAGCTAAAA
** * * * * *
9307 CATG-CTATAATTGAATTTCTACTTAGAGAAACATG-AGAAAAACACATTCGTTGATAAAAAAAG
65 CA-GAAAATAATTGAATGTCTACCTAAAGAAACATGAAGAAAAACACATTCATTGACAAAAAAAG
9370 TCCATTTATAGTCACCCATTCCTTTAAAAGCTTTATTATTCAT
129 TCCATTTATAGTCACCCATTCCTTTAAAAGCTTTATTATTCAT
* * *
9413 TTTAAATTGTTTTATAATCTCATACTT-GATTTTAAGTTGAATTTTTTCATATTTTTAGTTAAAA
1 TTTAAATTATTTTATAATCTCATA-TTAGATTTTAAGTTGAATTTTTTCACATTTTTAGCTAAAA
** *
9477 CAGAAAATAATTGAATGTCTACCTAAAGAAACATGAAGAAAAAGGCATTCATTGACAAGAAAAGT
65 CAGAAAATAATTGAATGTCTACCTAAAGAAACATGAAGAAAAACACATTCATTGACAAAAAAAGT
*
9542 TCATTTATAGTCACC
130 CCATTTATAGTCACC
9557 NNNNNNNNNN
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
169 6 0.05
170 78 0.63
171 40 0.32
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (171 bp):
TTTAAATTATTTTATAATCTCATATTAGATTTTAAGTTGAATTTTTTCACATTTTTAGCTAAAAC
AGAAAATAATTGAATGTCTACCTAAAGAAACATGAAGAAAAACACATTCATTGACAAAAAAAGTC
CATTTATAGTCACCCATTCCTTTAAAAGCTTTATTATTCAT
Found at i:12980 original size:172 final size:171
Alignment explanation
Indices: 12751--13178 Score: 477
Period size: 172 Copynumber: 2.5 Consensus size: 171
12741 NNNNATGTGT
* *
12751 AAAAAAAACTATTCATT-AAAGAAAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTAT
1 AAAAAAAACTATTCATTGAGA-AAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTAT
* **
12815 TACAAGGTTTAAATTGTTTTATAATCTCATAATTAATTTTAATTTGAATTTGTTTT-CATATTTT
65 TACAAGCTTTAAATTGTTTTATAATCTCATAATTAATTTTAAGATGAATTT-TTTTACATATTTT
* *
12879 GTTAAAACAGACTATAATTGAATGCCTGCCTTCAGAAATC-TGTA
129 ATTAAAACAAACTATAATTGAATGCCTGCCTTCAGAAA-CATG-A
* * *
12923 AAAAAAAATTATTCATTGAGAAAAAAAGTTCATTTATAGTCACCCATTCCATCAAAAGCCTTATT
1 AAAAAAAACTATTCATTGAGAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
* ********** *
12988 ACTCA-CNNNNNNNNNNTTTATAATCTCATAATTAATTTTAAGATGAATTTTTTTACATTTTTTA
66 AC-AAGCTTTAAATTGTTTTATAATCTCATAATTAATTTTAAGATGAATTTTTTTACATATTTTA
* * *
13052 TTAAAACAAACTATAATTGAATTCTTGCCTTGAGAAACATGA
130 TTAAAACAAACTATAATTGAATGCCTGCCTTCAGAAACATGA
* * * * ***
13094 AAAAAAAGCTATTCATTGAGAAGAAAAGTCCATTTATTGTCACCCATTCTTTCAAAAATTTTATT
1 AAAAAAAACTATTCATTGAGAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
**
13159 ACTCGCTTTAAATTGTTTTA
66 ACAAGCTTTAAATTGTTTTA
13179 NNNNNNNNNN
Statistics
Matches: 204, Mismatches: 47, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
171 68 0.33
172 133 0.65
173 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.38
Consensus pattern (171 bp):
AAAAAAAACTATTCATTGAGAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
ACAAGCTTTAAATTGTTTTATAATCTCATAATTAATTTTAAGATGAATTTTTTTACATATTTTAT
TAAAACAAACTATAATTGAATGCCTGCCTTCAGAAACATGA
Found at i:15275 original size:170 final size:161
Alignment explanation
Indices: 15061--15369 Score: 304
Period size: 170 Copynumber: 1.9 Consensus size: 161
15051 TATAAAACAA
* * * * * *
15061 TTTAAAGCGAGTAATAAGGCTTTCGGAAGAATGGGTGGCTATAAATGGACTTTTCTT-CTGAATG
1 TTTAAAGCGAGTAATAAAGCTTTCGGAAGAATAGGTGACTATAAATAGACTTTTCTTAC-AAATA
** *
15125 AATAACATTTTTTGCATGTTTCTCAAGGTAGGCATTCAATTA-TAGTCTGCTTTAA-CAAAAGAT
65 AATAACATTTTTTGCATGTTTCTCAAGGTAAACATTCAATTATTA-TCTACTTTAATCAAAA-AT
15188 G-AAAAAAATTCAACTTAAAATGAATTATGAGAT
128 GTAAAAAAATTCAACTTAAAATGAATTATGAGAT
* * *
15221 NNNNNNNNNNTTTAAAGTGAGTAATAAAGTTTTC-GAAGGACTAGGTGACTATAAATAGACTTTT
1 ----------TTTAAAGCGAGTAATAAAGCTTTCGGAA-GAATAGGTGACTATAAATAGACTTTT
* * * * *
15285 CTTACAAATAAATACCTTTTTTTTCATGTTTCTTAAGGTAAACATTCAATTATTATCTATTTTAA
55 CTTACAAATAAATAACATTTTTTGCATGTTTCTCAAGGTAAACATTCAATTATTATCTACTTTAA
15350 TCAAAAATGTAAAAAAATTC
120 TCAAAAATGTAAAAAAATTC
15370 NNNNNNNNNN
Statistics
Matches: 117, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
169 3 0.03
170 96 0.82
171 18 0.15
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.35
Consensus pattern (161 bp):
TTTAAAGCGAGTAATAAAGCTTTCGGAAGAATAGGTGACTATAAATAGACTTTTCTTACAAATAA
ATAACATTTTTTGCATGTTTCTCAAGGTAAACATTCAATTATTATCTACTTTAATCAAAAATGTA
AAAAAATTCAACTTAAAATGAATTATGAGAT
Found at i:15546 original size:16 final size:16
Alignment explanation
Indices: 15525--15555 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15515 TTTTAACAAA
15525 AAATTAAAACAAATTC
1 AAATTAAAACAAATTC
*
15541 AAATTAAAATAAATT
1 AAATTAAAACAAATT
15556 ATGAGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATTAAAACAAATTC
Found at i:15558 original size:171 final size:171
Alignment explanation
Indices: 15006--15752 Score: 557
Period size: 171 Copynumber: 4.4 Consensus size: 171
14996 NNNNNNNNNN
* * * * *
15006 TTAACTAAAAATGT-AAAAAATTTAACTTCAAATCAATTATAAGATTATAAAACAATTTAAAGCG
1 TTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGCG
** ** * * * *
15070 AGTAATAAGGCTTTCGGAA-GAATGGGTGGCTATAAATGGACTTTTCTT-CTGAATGAATAACAT
66 AGTAATAA-AATTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTACTCAATAAATAACTT
* * * * * *
15133 TTTTTGCATGTTTCTCAAGGTAGGCATTCAATTATAGTCTGCT
129 TTTTTTCACGTTTCTCAAGGCAAGAATTCAATTATAGTCTGTT
* * ********** *
15176 TTAACAAAAGATG-AAAAAAATTCAACTTAAAATGAATTATGAGATNNNNNNNNNNTTTAAAGTG
1 TTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGCG
* * * * * *
15240 AGTAATAAAGTTTTCGAAGGACTAGGTGACTATAAATAGACTTTTCTTAC-AAATAAATACCTTT
66 AGTAATAAAATTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTACTCAATAAATAACTTT
* * * *
15304 TTTTTCATGTTTCTTAAGGTAA-ACATTCAATTATTA-TCTATT
130 TTTTTCACGTTTCTCAAGGCAAGA-ATTCAATTA-TAGTCTGTT
***********
15346 TTAATC-AAAAATGTAAAAAAATTCNNNNNNNNNNCAATTATGAGATTATAAAACAATTTAAAGC
1 TTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGC
* *
15410 GAGTAATAAAATTTTTGAAGAAATGTGTGACAATAAATGGACTTTTCTT-CTCAATAAATAACTT
65 GAGTAATAAAATTTTTGAAGGAATG-GTGACTATAAATGGACTTTTCTTACTCAATAAATAACTT
*
15474 TTTTTTTACGTTTCTCAAGGCAAGAATTCAATTATAGTCTGTT
129 TTTTTTCACGTTTCTCAAGGCAAGAATTCAATTATAGTCTGTT
*
15517 TTAACAAAAAAT-TAAAACAAATTCAAATTAAAATAAATTATGAGATTATAAAACAATTTAAAGC
1 TTAACAAAAAATGTAAAA-AAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGC
* * * * ********* * * ***
15581 TAGTAATAAGACTATTGAAGGNNNNNNNNNNTATAAATGGACTTTT-TTCCTCAATGAATGGTTT
65 GAGTAATAAAATTTTTGAAGG-AATGGTGACTATAAATGGACTTTTCTTACTCAATAAATAACTT
* * *
15645 TTTTTTCACATTTCT-AGAGGCAAGCATTCGATTATAGTCT-TT
129 TTTTTTCACGTTTCTCA-AGGCAAGAATTCAATTATAGTCTGTT
** * * * *
15687 TTAATTATAAATGTAAAAAAATTCAACTTAAAATAAATTTTGAGATTCTAAAATAATTTAAAGCG
1 TTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGCG
15752 A
66 A
15753 NNNNNNNNNN
Statistics
Matches: 447, Mismatches: 113, Indels: 34
0.75 0.19 0.06
Matches are distributed among these distances:
169 6 0.01
170 198 0.44
171 242 0.54
172 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.35
Consensus pattern (171 bp):
TTAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTATGAGATTATAAAACAATTTAAAGCG
AGTAATAAAATTTTTGAAGGAATGGTGACTATAAATGGACTTTTCTTACTCAATAAATAACTTTT
TTTTCACGTTTCTCAAGGCAAGAATTCAATTATAGTCTGTT
Done.