Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398070.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1379.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3886
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.20

Warning! 1703 characters in sequence are not A, C, G, or T


Found at i:3173 original size:171 final size:156

Alignment explanation


    Indices: 2957--3284  Score: 265
    Period size: 171  Copynumber: 2.0  Consensus size: 156

       2947 ATTTAAAGTG

                      *                    *      *         **    *          
       2957 AGTAATAAGCTTTTTGAAAGAATGGATGACTTTAAATGGACTTTTCTTGTCAAAGAAT-GCTTAT
          1 AGTAATAAGCCTTTTGAAAGAATGGATGACTATAAATGAACTTTTCTTCCCAAACAATGGCTT-T

                  *             * *                          *               
       3021 TTCTT-TATAG-TTCT-CAGGGTAGAAATTCAATTATAGTATGTTTTAATAAAAAATGTC-AAAA
         65 TT-TTGCA-AGTTTCTCCA-AGCAGAAATTCAATTATAGTATGTTTTAACAAAAAATG-CAAAAA

                *    *                     
       3082 AATTGAACTTAAAATCAATTATGAGATTATA
        126 AATTCAACTGAAAATCAATTATGAGATTATA

                                                                             
       3113 NNNNNNNNNNNNNNNAGTAATAAGCCTTTT-AAAGGAAT-GAGTGACTATAAATGAACTTTTCTT
          1 ---------------AGTAATAAGCCTTTTGAAA-GAATGGA-TGACTATAAATGAACTTTTCTT

                 *                 *               *             *           
       3176 CCCAACCAATGGCTTTTTTTGCACGTTTCTCCAAGCAGACATTCAATTATAGTCTGTTTTAACAA
         49 CCCAAACAATGGCTTTTTTTGCAAGTTTCTCCAAGCAGAAATTCAATTATAGTATGTTTTAACAA

                                                       
       3241 AAAATGCAAAAAAATTCAACTGAAAATCAATTATGAGATTATA
        114 AAAATGCAAAAAAATTCAACTGAAAATCAATTATGAGATTATA

             
       3284 A
          1 A

       3285 AANNNNNNNN


Statistics
Matches: 134,  Mismatches: 16, Indels: 29
        0.75            0.09        0.16

Matches are distributed among these distances:
 156    1  0.01
 170    9  0.07
 171  118  0.88
 172    6  0.04

ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34


Consensus pattern (156 bp):   
AGTAATAAGCCTTTTGAAAGAATGGATGACTATAAATGAACTTTTCTTCCCAAACAATGGCTTTT
TTTGCAAGTTTCTCCAAGCAGAAATTCAATTATAGTATGTTTTAACAAAAAATGCAAAAAAATTC
AACTGAAAATCAATTATGAGATTATA
Done.