genome.fa.s82.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397335.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3572.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49612

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185--2514	172	13.7	161	69	14	209	34	13	10	37	1.80
492--803	173	1.8	173	82	2	412	36	9	11	41	1.75
4--2392	343	7.0	339	72	9	814	34	13	10	38	1.80
1--2522	171	14.7	170	73	7	1282	34	13	10	37	1.80
2757--3908	170	6.8	169	74	6	466	34	13	11	36	1.81
4775--5102	169	2.0	161	87	4	387	35	15	10	35	1.82
4708--5397	172	4.0	172	77	5	562	36	14	10	34	1.80
6586--9465	171	16.9	171	73	5	1865	34	13	11	37	1.82
10807--15412	171	26.9	171	70	5	2308	36	11	12	34	1.80
13514--13857	174	2.0	173	82	4	424	41	11	9	36	1.75
16563--17018	172	2.7	169	77	5	389	39	11	9	37	1.74
17559--17955	171	2.3	170	74	3	400	37	14	12	32	1.84
18600--18932	172	2.0	161	82	5	330	37	12	13	33	1.83
19460--19896	172	2.5	171	79	6	420	37	11	11	36	1.78
22432--22480	21	2.3	21	100	0	98	40	12	16	30	1.85
24075--24401	168	2.0	160	75	11	277	38	12	12	33	1.81
23063--28112	171	29.7	171	70	4	2460	36	11	13	33	1.81
29600--31762	341	6.4	340	76	4	1638	36	12	13	34	1.82
29600--31762	171	12.8	171	73	5	1479	36	12	13	34	1.82
31863--32654	171	4.6	171	76	5	726	36	12	12	35	1.80
31864--32654	342	2.3	338	79	5	858	36	12	12	36	1.80
32851--33556	342	2.1	342	80	3	778	37	12	13	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32851--33552	171	4.1	170	75	3	595	37	12	13	33	1.83
34589--34906	167	1.9	161	78	11	175	36	12	15	35	1.85
34422--35352	171	5.5	168	74	6	633	35	12	14	33	1.84
34593--35352	342	2.2	337	77	6	773	35	12	13	33	1.83
36993--37609	171	3.6	170	80	3	675	37	12	13	34	1.83
38163--38971	172	4.7	171	76	6	685	37	12	13	34	1.83
38309--38966	342	2.0	332	77	8	661	37	12	13	35	1.83
39178--40244	170	6.3	169	70	5	448	36	12	12	33	1.81
40518--40843	167	2.0	161	78	11	331	33	13	15	35	1.85
40479--42740	170	13.3	167	71	7	662	37	11	13	34	1.80
40727--42070	684	2.0	668	80	3	1422	36	11	13	35	1.80
41961--41999	20	1.9	21	89	5	62	28	10	10	51	1.68
42860--43192	171	1.9	171	83	3	429	39	12	13	34	1.83
44300--44716	169	2.5	149	86	9	244	36	11	12	32	1.79
44388--44716	169	2.0	158	84	6	349	36	11	13	32	1.81
43677--46165	171	14.6	169	75	5	1095	36	11	12	33	1.80
44737--46165	341	4.2	340	76	4	1051	36	11	13	34	1.80
45089--46165	512	2.1	512	76	3	1085	37	11	12	35	1.80
47142--47696	167	3.3	168	79	6	577	40	9	13	36	1.78
48638--49612	170	5.7	170	72	5	603	36	12	13	32	1.82
48738--49612	171	5.1	170	72	5	493	37	12	13	32	1.82
48738--49612	342	2.6	340	80	3	889	37	12	13	32	1.82

Tables:   1

The End!