Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398076.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1384.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.29

Warning! 319 characters in sequence are not A, C, G, or T


Found at i:1138 original size:171 final size:169

Alignment explanation


    Indices: 722--1153  Score: 422
    Period size: 171  Copynumber: 2.5  Consensus size: 169

        712 NNNNNNNNGT

                 *                    *                *         **          
        722 TTTTTTACATTTTTCATTAAAACAGACTATAATTGAATGTCTATCTTGAGAAATGTGAAGAAAAA
          1 TTTTTCACATTTTTCATTAAAACAGAGTATAATTGAATGTCTACCTTGAGAAACATGAAGAAAAA

                  *     *          *    *          *                         
        787 CACATTTATTAGCAAGAAAAGTCCATTTGTAGTTACACATTCCTTCAAAAGCCTTATTACTCGCT
         66 C-CATTCATTAGTAAGAAAAGTCTATTTATAGTTACACAGTCCTTCAAAAGCCTTATTACTCGCT

                        *  *                     *  
        852 TTAAATGATTTTCTAGCCTCATAATTGATTTTAAGTTGAA
        130 TTAAATGATTTTATAACCTCATAATTGATTTTAAGTTCAA

                  ********                               *         *         
        892 TTTTNNNNNNNNNNTT-ATTAAAACAG-GTTATAATTGAATGTCTGCCTTGAGAACCATGAAGAA
          1 TTTT--TCACATTTTTCATTAAAACAGAG-TATAATTGAATGTCTACCTTGAGAAACATGAAG-A

                 *        *   *                    **           *      *     
        955 AAAACTATTCATTAATAACAAAAGTCTATTTATAGTCT-TTCAGTCCTTCAACAGCCTTTTTACT
         62 AAAACCATTCATTAGTAAGAAAAGTCTATTTATAGT-TACACAGTCCTTCAAAAGCCTTATTACT

             *     *    *                                
       1019 -TCTTCTCAATGGTTTTATAACCTCATAATTGATTTTAAGTTCAA
        126 CGCTT-TAAATGATTTTATAACCTCATAATTGATTTTAAGTTCAA

                                               *       *             *       
       1063 GTTTTTCACATTTTTCATTAAAACAGAGTATAATTCAATGTCTCCCTTGAGAAACATAAAGAAAA
          1 -TTTTTCACATTTTTCATTAAAACAGAGTATAATTGAATGTCTACCTTGAGAAACATGAAGAAAA

                       *              
       1128 ACGCATTCATTGGTAAGAAAAGTCTA
         65 AC-CATTCATTAGTAAGAAAAGTCTA

       1154 GTTACAACCT


Statistics
Matches: 204,  Mismatches: 48, Indels: 19
        0.75            0.18        0.07

Matches are distributed among these distances:
 170   15  0.07
 171  175  0.86
 172   14  0.07

ACGTcount: A:0.35, C:0.15, G:0.11, T:0.37


Consensus pattern (169 bp):   
TTTTTCACATTTTTCATTAAAACAGAGTATAATTGAATGTCTACCTTGAGAAACATGAAGAAAAA
CCATTCATTAGTAAGAAAAGTCTATTTATAGTTACACAGTCCTTCAAAAGCCTTATTACTCGCTT
TAAATGATTTTATAACCTCATAATTGATTTTAAGTTCAA
Done.