Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398085.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1392.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5022
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.28

Warning! 746 characters in sequence are not A, C, G, or T


Found at i:975 original size:18 final size:18

Alignment explanation


    Indices: 952--988  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        942 ATTCATTCGA

                   *          
        952 AAGCATTTAAAGATTGAG
          1 AAGCATTCAAAGATTGAG

                    *         
        970 AAGCATTCGAAGATTGAG
          1 AAGCATTCAAAGATTGAG

             
        988 A
          1 A

        989 GCANNNNNNN


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24


Consensus pattern (18 bp):   
AAGCATTCAAAGATTGAG

Found at i:1060 original size:23 final size:23

Alignment explanation


    Indices: 1034--1129  Score: 156
    Period size: 23  Copynumber: 4.2  Consensus size: 23

       1024 GGGTGAAGAC

                    *              
       1034 CAAGCGACGGCGAAGTTCGTGAT
          1 CAAGCGACAGCGAAGTTCGTGAT

                 *  *              
       1057 CAAGCAACGGCGAAGTTCGTGAT
          1 CAAGCGACAGCGAAGTTCGTGAT

                   *               
       1080 CAAGCGATAGCGAAGTTCGTGAT
          1 CAAGCGACAGCGAAGTTCGTGAT

                                   
       1103 CAAGCGACAGCGAAGTTCGTGAT
          1 CAAGCGACAGCGAAGTTCGTGAT

                
       1126 CAAG
          1 CAAG

       1130 ACAAAGTCCT


Statistics
Matches: 68,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  23   68  1.00

ACGTcount: A:0.30, C:0.21, G:0.31, T:0.18


Consensus pattern (23 bp):   
CAAGCGACAGCGAAGTTCGTGAT

Found at i:1965 original size:23 final size:24

Alignment explanation


    Indices: 1930--1990  Score: 113
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       1920 TATTAAATAT

                                    
       1930 TATTTTTATTTTTTCGCTACGTTA
          1 TATTTTTATTTTTTCGCTACGTTA

                                    
       1954 TATTTTTATTTTTTCGCTACGTTA
          1 TATTTTTATTTTTTCGCTACGTTA

                  *      
       1978 TATTTTAATTTTT
          1 TATTTTTATTTTT

       1991 GATTATTTTT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   36  1.00

ACGTcount: A:0.18, C:0.10, G:0.07, T:0.66


Consensus pattern (24 bp):   
TATTTTTATTTTTTCGCTACGTTA
Done.