Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398127.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_143.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30850

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2188--2522
171
2.0
161
80
7
359
36
10
14
35
1.80
3181--3516
171
2.0
172
79
4
374
35
9
12
38
1.77
4389--4999
171
3.6
170
74
6
543
38
13
12
33
1.83
4798--4837
21
1.9
21
85
10
55
32
12
7
47
1.69
4390--4999
172
3.5
170
73
5
458
38
13
12
33
1.83
5107--5576
170
2.8
168
82
3
519
41
10
10
36
1.73
5217--5576
172
2.1
170
85
1
477
41
10
10
37
1.74
5980--6299
172
1.9
162
78
8
329
39
11
12
33
1.79
6603--7461
170
5.0
171
76
5
634
37
12
13
33
1.82
8957--9317
172
2.1
171
84
3
476
37
14
10
37
1.81
9496--9555
28
2.1
28
100
0
120
50
11
13
25
1.75
10938--11491
171
3.2
170
80
6
584
36
11
14
37
1.82
11909--12218
171
1.9
161
76
8
298
31
13
14
37
1.85
12408--12828
171
2.5
172
76
5
415
34
14
11
37
1.82
13337--14090
171
4.4
171
77
5
698
35
14
12
36
1.83
13383--14090
342
2.1
341
80
4
773
34
14
12
37
1.83
14619--15324
172
4.1
171
76
6
515
37
12
11
36
1.80
20972--22719
171
10.2
169
71
7
1046
34
14
12
36
1.83
24813--25140
172
2.0
161
81
5
313
36
11
11
37
1.79

Tables:   1

The End!