Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398143.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1448.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3568
ACGTcount: A:0.20, C:0.08, G:0.07, T:0.21

Warning! 1590 characters in sequence are not A, C, G, or T


Found at i:2655 original size:171 final size:162

Alignment explanation


    Indices: 2296--2628  Score: 343
    Period size: 171  Copynumber: 2.0  Consensus size: 162

       2286 NAATGATTTT

                                                        *                    
       2296 ATAATCTCAAAATTAATTTTAAGTTGAATTTTGTTACATTTTTCTTTAAAACAGATAATAATTAA
          1 ATAATCTCAAAATTAATTTTAAGTTGAATTTTGTTACATTTTTCGTTAAAACAGATAATAATTAA

               *        *   *             *   *                              
       2361 TGTCTATCCTGAGAAATGTGCAAAAAAAGTTATTGATAGAGAAGAAAAGTTCATTTAGAGTCACT
         66 TGTATATCCTGAAAAACGTGCAAAAAAAGTCATTCATAGAGAAGAAAAGTTCATTTAGAGTCACT

              *           *                 
       2426 CATTCCTTCAAAAGGCATATTACTCGCTTTAA
        131 CACTCCTTCAAAAGCCATATTACTCGCTTTAA

                      **     *    *                                      *   
       2458 ATNNNNNNNNNNTCTCATAATTGATTTTAAGTTGAATTTT-TTCACACTTTTT-GTTAAAATAGA
          1 AT--------AATCTCAAAATTAATTTTAAGTTGAATTTTGTT-ACA-TTTTTCGTTAAAACAGA

                                                              *          *   
       2521 CT-ATAATTGAATGTATA-CCTTGAAAAACGTGCAAAAAAAGTCATTCATTGAGAAG-AAATTTC
         56 -TAATAATT-AATGTATATCC-TGAAAAACGTGCAAAAAAAGTCATTCATAGAGAAGAAAAGTT-

                  *       *               *               
       2583 CATTTATAGTCACTTACTCCTTCAAAAGCCTTATTACTCGCTTTAA
        117 CATTTAGAGTCACTCACTCCTTCAAAAGCCATATTACTCGCTTTAA

       2629 NNNNNNNNNN


Statistics
Matches: 139,  Mismatches: 18, Indels: 19
        0.79            0.10        0.11

Matches are distributed among these distances:
 162    2  0.01
 169    2  0.01
 170   51  0.37
 171   84  0.60

ACGTcount: A:0.36, C:0.14, G:0.11, T:0.36


Consensus pattern (162 bp):   
ATAATCTCAAAATTAATTTTAAGTTGAATTTTGTTACATTTTTCGTTAAAACAGATAATAATTAA
TGTATATCCTGAAAAACGTGCAAAAAAAGTCATTCATAGAGAAGAAAAGTTCATTTAGAGTCACT
CACTCCTTCAAAAGCCATATTACTCGCTTTAA
Done.