Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8984705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 112788 characters in sequence are not A, C, G, or T
File 1 of 20
Found at i:14338 original size:2 final size:2
Alignment explanation
Indices: 14331--14355 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14321 AAACCCTTAC
14331 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14356 GGACAGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:29967 original size:63 final size:63
Alignment explanation
Indices: 29898--30022 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 63
29888 CGTGAAAACT
* *
29898 CTTGAAGCGAAGATATCAAGTGTTCGTAATCAAGATTAAGTCATGAAGACCCTTGAAGTGAAA
1 CTTGAAGCGAAGATATCAAGTGTTCGTAATCAAGATTAAGTCATAAAGACCCTTGAAATGAAA
* * * *
29961 CTTGAAGCGAAGATATCAATTGTTTGTGATCAAGATTAAGTCGTAAAGACCCTTGAAATGAA
1 CTTGAAGCGAAGATATCAAGTGTTCGTAATCAAGATTAAGTCATAAAGACCCTTGAAATGAA
30023 GATCAAGCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (63 bp):
CTTGAAGCGAAGATATCAAGTGTTCGTAATCAAGATTAAGTCATAAAGACCCTTGAAATGAAA
Found at i:31168 original size:35 final size:35
Alignment explanation
Indices: 31107--31233 Score: 112
Period size: 35 Copynumber: 3.6 Consensus size: 35
31097 GTCTTTAAAG
* *
31107 GGCACATGCCGCCAG-TATCACCTAAAAAAGCTAGC
1 GGCACATGCCGCGAGCT-TCACTTAAAAAAGCTAGC
* * *
31142 AGCACATGCCGCGAGCTTCACTTAAAAAGGCTCGC
1 GGCACATGCCGCGAGCTTCACTTAAAAAAGCTAGC
** * * * * *
31177 GGCATGTGCAGTGAGCTTCACTCAAAAAAGCTTGG
1 GGCACATGCCGCGAGCTTCACTTAAAAAAGCTAGC
* *
31212 GGCACATGTCGTGAGCTTCACT
1 GGCACATGCCGCGAGCTTCACT
31234 CAAATTCACT
Statistics
Matches: 73, Mismatches: 18, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
35 72 0.99
36 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (35 bp):
GGCACATGCCGCGAGCTTCACTTAAAAAAGCTAGC
Found at i:32778 original size:29 final size:29
Alignment explanation
Indices: 32745--32809 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
32735 CTTTTATACT
32745 TGTTCACATACAG-TCTTTTCTCTTGTACC
1 TGTTCACATACAGCT-TTTTCTCTTGTACC
** * *
32774 TGTTCATGTATAGCTTTTTCTCTTGTATC
1 TGTTCACATACAGCTTTTTCTCTTGTACC
32803 TGTTCAC
1 TGTTCAC
32810 GCATAGATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.15, C:0.23, G:0.12, T:0.49
Consensus pattern (29 bp):
TGTTCACATACAGCTTTTTCTCTTGTACC
Found at i:32815 original size:29 final size:29
Alignment explanation
Indices: 32760--32820 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
32750 ACATACAGTC
* * *
32760 TTTTCTCTTGTACCTGTTCATGTATAGCT
1 TTTTCTCTTGTACCTGTTCACGCATAGAT
*
32789 TTTTCTCTTGTATCTGTTCACGCATAGAT
1 TTTTCTCTTGTACCTGTTCACGCATAGAT
32818 TTT
1 TTT
32821 CTTTATTAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.20, G:0.13, T:0.52
Consensus pattern (29 bp):
TTTTCTCTTGTACCTGTTCACGCATAGAT
Found at i:34901 original size:57 final size:58
Alignment explanation
Indices: 34813--34951 Score: 226
Period size: 57 Copynumber: 2.4 Consensus size: 58
34803 AACATTATAT
*
34813 CAACTAGAATAAGTGGAGCATTACAACCATTATAAATGAAACACTACTTTA-GCAGAA
1 CAACTAGAATAAGTGGAGCATTACAACCATTATAAATGAAACACTACTTTACGCAAAA
* *
34870 CAACTAGAATAAGTGGAGCATTACAACCATTATAAGTGAAGCACTACTTTACGCAAAA
1 CAACTAGAATAAGTGGAGCATTACAACCATTATAAATGAAACACTACTTTACGCAAAA
* *
34928 TAACTAGAATAGGTGGAGCATTAC
1 CAACTAGAATAAGTGGAGCATTAC
34952 TCCATGTGAA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 49 0.64
58 27 0.36
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (58 bp):
CAACTAGAATAAGTGGAGCATTACAACCATTATAAATGAAACACTACTTTACGCAAAA
Found at i:35217 original size:29 final size:30
Alignment explanation
Indices: 35168--35256 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 30
35158 TTTGCTTTTT
* * * *
35168 CCTTGTTCTCTTATACTTGTTCATATACAA
1 CCTTCTTCTCTTGTACCTGTTCATGTACAA
35198 CCTT-TTCTCTTGTACCTGTTCATGTAC-A
1 CCTTCTTCTCTTGTACCTGTTCATGTACAA
* *
35226 GCTTCCTT-TCTTGTACCTGTTCACGTACAA
1 CCTT-CTTCTCTTGTACCTGTTCATGTACAA
35256 C
1 C
35257 TTTTCTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
28 4 0.08
29 39 0.78
30 7 0.14
ACGTcount: A:0.18, C:0.28, G:0.10, T:0.44
Consensus pattern (30 bp):
CCTTCTTCTCTTGTACCTGTTCATGTACAA
Found at i:37660 original size:81 final size:81
Alignment explanation
Indices: 37523--37809 Score: 400
Period size: 81 Copynumber: 3.6 Consensus size: 81
37513 TTATCCTTTG
* * * *
37523 AGATAATTTGAAGATAATATTTA-AATTG-GACCAA-CTAAAAATTAGCTATTGGTCATCCAATT
1 AGATAATTTAAAGATAATATTCATATTTGTGACCAATC-AAAATTTAGCTATTGGTCATCCAATT
*
37585 TGTCTCTAAATAAATTA
65 TGTCTCTAAATAAATCA
* *
37602 AGGTAATTTAAAGATAATATTCATATTTGTGACCAATCAAAATTTAGCTATTGATCATCCAATTT
1 AGATAATTTAAAGATAATATTCATATTTGTGACCAATCAAAATTTAGCTATTGGTCATCCAATTT
37667 GTCTCTAAATAAATCA
66 GTCTCTAAATAAATCA
* * *
37683 AGATAATTTAGAGATAATATTCATATTTTTGACCAATCAAAATTTAGTTATTGGTCATCCAATTT
1 AGATAATTTAAAGATAATATTCATATTTGTGACCAATCAAAATTTAGCTATTGGTCATCCAATTT
*
37748 ATCTCTAAATAAATCA
66 GTCTCTAAATAAATCA
* * * * *
37764 AGATAATTTAGAGATAATATTTATATTTTTGGCTAATCAAAATTTA
1 AGATAATTTAAAGATAATATTCATATTTGTGACCAATCAAAATTTA
37810 ATTATTGTTC
Statistics
Matches: 189, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
79 20 0.11
80 4 0.02
81 164 0.87
82 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.38
Consensus pattern (81 bp):
AGATAATTTAAAGATAATATTCATATTTGTGACCAATCAAAATTTAGCTATTGGTCATCCAATTT
GTCTCTAAATAAATCA
Found at i:38119 original size:18 final size:17
Alignment explanation
Indices: 38093--38139 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
38083 CATTCGGAAA
* *
38093 CATTTAAAGATTGGGAGG
1 CATTCAAAGATTGAGA-G
38111 CATTCAAAGATTGAGAG
1 CATTCAAAGATTGAGAG
38128 CATTTCAAAGAT
1 CA-TTCAAAGAT
38140 AAAAAAGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (17 bp):
CATTCAAAGATTGAGAG
Found at i:38300 original size:51 final size:49
Alignment explanation
Indices: 38219--38361 Score: 160
Period size: 51 Copynumber: 2.9 Consensus size: 49
38209 GTTTGTGATC
* * * * *
38219 AAGATAAAGTGTTCATAATTGAGATTAAGTCGTGAAGACCCTTGAAGCGA
1 AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGC-A
* * * * *
38269 AGATATCAAGTGTTCGTGATTAAGATCAAGTCGTAAAAACTCTTGACGCA
1 A-AGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCA
* *
38319 AAGATCAAGTGTTCATGATCAAAATTAAGTCGTAAAAACCCTT
1 AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTT
38362 AAAATGAAGA
Statistics
Matches: 76, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
49 36 0.47
50 3 0.04
51 37 0.49
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (49 bp):
AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCA
Found at i:38372 original size:49 final size:49
Alignment explanation
Indices: 38219--38376 Score: 163
Period size: 49 Copynumber: 3.2 Consensus size: 49
38209 GTTTGTGATC
* * * * *
38219 AAGATAAAGTGTTCATAATTGAGATTAAGTCGTGAAGACCCTTGAAGCG
1 AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCG
* * * * *
38268 AAGATATCAAGTGTTCGTGATTAAGATCAAGTCGTAAAAACTCTTGACGCA
1 AAG--ATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCG
* * * **
38319 AAGATCAAGTGTTCATGATCAAAATTAAGTCGTAAAAACCCTTAAAATG
1 AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCG
38368 AAGATCAAG
1 AAGATCAAG
38377 CAAGTTCGTG
Statistics
Matches: 87, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
49 48 0.55
51 39 0.45
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (49 bp):
AAGATCAAGTGTTCATGATTAAGATTAAGTCGTAAAAACCCTTGAAGCG
Found at i:42621 original size:83 final size:83
Alignment explanation
Indices: 42438--42619 Score: 291
Period size: 83 Copynumber: 2.2 Consensus size: 83
42428 TTAATTTTTT
*
42438 AAAAATTAAAAATAAAAATGGAACATGAAAAACATAAAAAACACAAAATTTCAAAAAAATTAAAA
1 AAAAATTAAAAATAAAAATGGAACATCAAAAACATAAAAAACACAAAATTTCAAAAAAATTAAAA
*
42503 AGCTTGAAAAAAACTGAA
66 AGCTAGAAAAAAACTGAA
42521 AAAAATTAAAAATAAAAATGGAACA-CAAAAACCATAAAAAACACAAAATTTCATAAAAAA-TAA
1 AAAAATTAAAAATAAAAATGGAACATCAAAAA-CATAAAAAACACAAAATTTCA-AAAAAATTAA
*
42584 AAAGCTAGGAAAAAACTG-A
64 AAAGCTAGAAAAAAACTGAA
42603 AAAAATT-AAAATAAAAA
1 AAAAATTAAAAATAAAAA
42620 AAAAACAAAG
Statistics
Matches: 94, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
81 10 0.11
82 13 0.14
83 65 0.69
84 6 0.06
ACGTcount: A:0.69, C:0.09, G:0.07, T:0.16
Consensus pattern (83 bp):
AAAAATTAAAAATAAAAATGGAACATCAAAAACATAAAAAACACAAAATTTCAAAAAAATTAAAA
AGCTAGAAAAAAACTGAA
Found at i:42760 original size:21 final size:21
Alignment explanation
Indices: 42736--42817 Score: 119
Period size: 21 Copynumber: 3.9 Consensus size: 21
42726 TGAAGTAAAT
42736 AGCTATAGTTGACTATGGAGA
1 AGCTATAGTTGACTATGGAGA
* * *
42757 AGCTTTAGTTGACTATGTAAA
1 AGCTATAGTTGACTATGGAGA
42778 TAGCTATAGTTGACTATGGAGA
1 -AGCTATAGTTGACTATGGAGA
*
42800 AGCTCTAGTTGACTATGG
1 AGCTATAGTTGACTATGG
42818 TTGTGTTTCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
21 35 0.66
22 18 0.34
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (21 bp):
AGCTATAGTTGACTATGGAGA
Found at i:42791 original size:43 final size:43
Alignment explanation
Indices: 42730--42816 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
42720 AGTTCTTGAA
*
42730 GTAAATAGCTATAGTTGACTATGGAGAAGCTTTAGTTGACTAT
1 GTAAATAGCTATAGTTGACTATGGAGAAGCTCTAGTTGACTAT
42773 GTAAATAGCTATAGTTGACTATGGAGAAGCTCTAGTTGACTAT
1 GTAAATAGCTATAGTTGACTATGGAGAAGCTCTAGTTGACTAT
42816 G
1 G
42817 GTTGTGTTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (43 bp):
GTAAATAGCTATAGTTGACTATGGAGAAGCTCTAGTTGACTAT
Found at i:43730 original size:92 final size:92
Alignment explanation
Indices: 43603--43778 Score: 262
Period size: 92 Copynumber: 1.9 Consensus size: 92
43593 GTACAATAGA
* * * * * *
43603 GGAAGAATGCCTAATAATGAACAAGAAGATTGGATATCAAGCTTGAAGTGTAAGCGCAAGGAAGG
1 GGAAGAATGCCTAATAATGAACAAAAAGATTGGATATAAAGATCGAAGTGCAAGCACAAGGAAGG
*
43668 TTTAGTTCAAGTAGGCTTGCAATGGGG
66 TTTAGCTCAAGTAGGCTTGCAATGGGG
* * *
43695 GGAAGAATGCCTAATAATGAGCAAAAAGATTGGATATAAAGATCGGATTGCAAGCACAAGGAAGG
1 GGAAGAATGCCTAATAATGAACAAAAAGATTGGATATAAAGATCGAAGTGCAAGCACAAGGAAGG
43760 TTTAGCTCAAGTAGGCTTG
66 TTTAGCTCAAGTAGGCTTG
43779 GTTTGCTTGG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (92 bp):
GGAAGAATGCCTAATAATGAACAAAAAGATTGGATATAAAGATCGAAGTGCAAGCACAAGGAAGG
TTTAGCTCAAGTAGGCTTGCAATGGGG
Found at i:44068 original size:21 final size:21
Alignment explanation
Indices: 44043--44082 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
44033 CAGAGCTTCG
*
44043 AGAGTTGACTATAGCTTTGTT
1 AGAGTCGACTATAGCTTTGTT
* *
44064 AGAGTCGAGTATGGCTTTG
1 AGAGTCGACTATAGCTTTG
44083 AAAAATCCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.38
Consensus pattern (21 bp):
AGAGTCGACTATAGCTTTGTT
Found at i:55823 original size:2 final size:2
Alignment explanation
Indices: 55816--55841 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
55806 CCATTCTAAT
55816 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
55842 GACAATTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58454 original size:2 final size:2
Alignment explanation
Indices: 58443--58488 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
58433 TACTATTCTA
58443 AT AT -T AT AT AT AT -T AT AT A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58482 AT AT AT A
1 AT AT AT A
58489 GAAGTGTCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 3 0.07
2 38 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63592 original size:15 final size:15
Alignment explanation
Indices: 63572--63600 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63562 TGCTAGTGTT
63572 AACTTTTAGTAAAGA
1 AACTTTTAGTAAAGA
63587 AACTTTTAGTAAAG
1 AACTTTTAGTAAAG
63601 GTAGCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (15 bp):
AACTTTTAGTAAAGA
Found at i:73531 original size:29 final size:30
Alignment explanation
Indices: 73495--73572 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
73485 AATTATTAGT
73495 TATAAAAATTTATTTAATTTAAAATAAAAA
1 TATAAAAATTTATTTAATTTAAAATAAAAA
* * * *
73525 TATAAAAAATTAATTAA-ATATAATAAAAA
1 TATAAAAATTTATTTAATTTAAAATAAAAA
***
73554 TATATTTATTTATTTAATT
1 TATAAAAATTTATTTAATT
73573 ATTTTAAAAT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 22 0.59
30 15 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (30 bp):
TATAAAAATTTATTTAATTTAAAATAAAAA
Found at i:77582 original size:20 final size:21
Alignment explanation
Indices: 77543--77583 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
77533 TTTAAATTAA
* *
77543 TTAATTTAATTTTTTTAAAAT
1 TTAATTTAATTTATTAAAAAT
77564 TTAA-TTAATTTATTAAAAAT
1 TTAATTTAATTTATTAAAAAT
77584 AAATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAATTTAATTTATTAAAAAT
Found at i:78030 original size:15 final size:16
Alignment explanation
Indices: 78010--78040 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78000 TTATTGCCTG
78010 AAAATA-ATATTTTAA
1 AAAATAGATATTTTAA
78025 AAAATAGATATTTTAA
1 AAAATAGATATTTTAA
78041 GAATAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATAGATATTTTAA
Found at i:85768 original size:22 final size:22
Alignment explanation
Indices: 85740--85793 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
85730 CATTGTCAAG
85740 ATATATGAAACATAAATGCCTT
1 ATATATGAAACATAAATGCCTT
* *
85762 ATATATGAAAGATAAATGTCTT
1 ATATATGAAACATAAATGCCTT
85784 ATATATGAAA
1 ATATATGAAA
85794 ATACATTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (22 bp):
ATATATGAAACATAAATGCCTT
Found at i:86320 original size:104 final size:104
Alignment explanation
Indices: 86008--86320 Score: 423
Period size: 104 Copynumber: 3.0 Consensus size: 104
85998 GTCTTTTTCT
* * * *
86008 CAACTCTCT-C-TAATCTAGTTCAACGTTTACCTTATTTGGTGCAACATTCATCTCACTCTATGT
1 CAACTCTCTCCTTAATCTGGTTCAACGTTCACCTTATTTGATGCAACATTCATCTCACTCTATGA
* * * *
86071 CTATATATATAGCCTCACATCTTCACTCTCATCACACAA
66 CTATAAATACAGCCTCACACCTTCACTCTCATCACACAC
* * *
86110 CAACTCTTTCCTTAATCTGGTTCAACATTCACCTTATTTGATGCAACATTCATCTCACTCTATGC
1 CAACTCTCTCCTTAATCTGGTTCAACGTTCACCTTATTTGATGCAACATTCATCTCACTCTATGA
*
86175 CTATAAATACAGCCTCACACCTTCACTCTTATCACACAC
66 CTATAAATACAGCCTCACACCTTCACTCTCATCACACAC
* * * * * *
86214 CAACTCTCTCCTTAATCTGGTTTAACGTTCACCTTATTTAATACAACATTTATCTCAATCCATGA
1 CAACTCTCTCCTTAATCTGGTTCAACGTTCACCTTATTTGATGCAACATTCATCTCACTCTATGA
* * *
86279 CTATAAATACAACCTCACACCTTCACTCTCATTACATAC
66 CTATAAATACAGCCTCACACCTTCACTCTCATCACACAC
86318 CAA
1 CAA
86321 AAGCTTTTCA
Statistics
Matches: 185, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
102 8 0.04
103 1 0.01
104 176 0.95
ACGTcount: A:0.29, C:0.31, G:0.05, T:0.35
Consensus pattern (104 bp):
CAACTCTCTCCTTAATCTGGTTCAACGTTCACCTTATTTGATGCAACATTCATCTCACTCTATGA
CTATAAATACAGCCTCACACCTTCACTCTCATCACACAC
Found at i:91639 original size:18 final size:18
Alignment explanation
Indices: 91616--91658 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
91606 CTTATGTTTC
91616 TTTTTTTCCATTTTCAAT
1 TTTTTTTCCATTTTCAAT
* *
91634 TTTTTTT-TATTTTCACT
1 TTTTTTTCCATTTTCAAT
*
91651 TTGTTTTC
1 TTTTTTTC
91659 AATAGTTTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTTTTCCATTTTCAAT
Found at i:96835 original size:21 final size:21
Alignment explanation
Indices: 96797--96868 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
96787 AAAATTTAAG
96797 TAAATTTATTAT-TATTTTTTAT
1 TAAATTT-TTATAT-TTTTTTAT
96819 TAAATTTTTATATTTTTATT-T
1 TAAATTTTTATATTTTT-TTAT
**
96840 T-AATTTAAATAATTTTTTTAT
1 TAAATTTTTAT-ATTTTTTTAT
96861 TAATATTT
1 TAA-ATTT
96869 AAATAATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
20 9 0.21
21 18 0.43
22 11 0.26
23 4 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TAAATTTTTATATTTTTTTAT
Found at i:96861 original size:23 final size:23
Alignment explanation
Indices: 96811--96886 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 23
96801 TTTATTATTA
**
96811 TTTTTTATTAA-ATTTTTAT-AT
1 TTTTTTATTAATATTTAAATAAT
96832 TTTTATT-TT-A-ATTTAAATAAT
1 TTTT-TTATTAATATTTAAATAAT
96853 TTTTTTATTAATATTTAAATAAT
1 TTTTTTATTAATATTTAAATAAT
* *
96876 TATTTAATTAA
1 TTTTTTATTAA
96887 ATGTGATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 9 0.20
21 14 0.30
22 3 0.07
23 20 0.43
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTTTATTAATATTTAAATAAT
Found at i:96927 original size:16 final size:15
Alignment explanation
Indices: 96906--96939 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
96896 ACTGATGTAT
96906 TATAATGATATAATAA
1 TATAATGATAT-ATAA
*
96922 TATAATTATATATAA
1 TATAATGATATATAA
96937 TAT
1 TAT
96940 TTTATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TATAATGATATATAA
Found at i:97227 original size:18 final size:19
Alignment explanation
Indices: 97170--97244 Score: 68
Period size: 18 Copynumber: 3.9 Consensus size: 19
97160 AATTTGATAA
*
97170 ATAATATTTTTAATT--A-
1 ATAATAATTTTAATTAAAT
97186 ATAATAATTAATTAATTATTAAT
1 ATAATAATT--TTAATTA--AAT
97209 ATAA-AATTTTAATTAAAT
1 ATAATAATTTTAATTAAAT
*
97227 ATAATAATTTTATTTAAA
1 ATAATAATTTTAATTAAA
97245 ATTTTTAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
16 8 0.16
18 13 0.27
19 12 0.24
20 7 0.14
22 5 0.10
23 4 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATAATTTTAATTAAAT
Found at i:97244 original size:19 final size:18
Alignment explanation
Indices: 97206--97244 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
97196 ATTAATTATT
97206 AATATAAAATTTTAATTA
1 AATATAAAATTTTAATTA
*
97224 AATATAATAATTTTATTTA
1 AATATAA-AATTTTAATTA
97243 AA
1 AA
97245 ATTTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATATAAAATTTTAATTA
Found at i:107054 original size:30 final size:30
Alignment explanation
Indices: 107017--107107 Score: 164
Period size: 30 Copynumber: 3.0 Consensus size: 30
107007 CTAACCTATA
107017 TAAGAAACTAGGTTGAATCTAATATCGGAT
1 TAAGAAACTAGGTTGAATCTAATATCGGAT
*
107047 TAGGAAACTAGGTTGAATCTAATATCGGAT
1 TAAGAAACTAGGTTGAATCTAATATCGGAT
*
107077 TAAGAAACTAGGTTGAATCTCATATCGGAT
1 TAAGAAACTAGGTTGAATCTAATATCGGAT
107107 T
1 T
107108 GCTGGTCACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (30 bp):
TAAGAAACTAGGTTGAATCTAATATCGGAT
Found at i:116075 original size:28 final size:28
Alignment explanation
Indices: 116043--116097 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
116033 ATTTGAAAAT
116043 TTATTTATATTTGATGTAATGTATTTGC
1 TTATTTATATTTGATGTAATGTATTTGC
* *
116071 TTATTTATTTTTGATGTAATTTATTTG
1 TTATTTATATTTGATGTAATGTATTTG
116098 TTTGTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.62
Consensus pattern (28 bp):
TTATTTATATTTGATGTAATGTATTTGC
Found at i:116747 original size:11 final size:10
Alignment explanation
Indices: 116719--116752 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
116709 AGTTATATTT
116719 TAATTAATAA
1 TAATTAATAA
116729 TAATTAATCAA
1 TAATTAAT-AA
*
116740 TCATTAATAA
1 TAATTAATAA
116750 TAA
1 TAA
116753 GAGTATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (10 bp):
TAATTAATAA
Found at i:124230 original size:25 final size:25
Alignment explanation
Indices: 124200--124263 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
124190 AGGAAATGCT
* * *
124200 TTTCCAATGGAATTTTCGTTGGAAA
1 TTTCCAACGGAATTTTCATTGAAAA
124225 TTTCCAACGGAATTTTCATTGAAAA
1 TTTCCAACGGAATTTTCATTGAAAA
* *
124250 TTTTCGACGGAATT
1 TTTCCAACGGAATT
124264 ACTTTAATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (25 bp):
TTTCCAACGGAATTTTCATTGAAAA
Found at i:124623 original size:21 final size:21
Alignment explanation
Indices: 124588--124638 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
124578 TTGAACATTA
* *
124588 ATAGGACATACGTGATTGGTTG
1 ATAGG-CATACGTGACTAGTTG
*
124610 ATAGGCATGCGTGACTAGTTG
1 ATAGGCATACGTGACTAGTTG
124631 ATAGGCAT
1 ATAGGCAT
124639 TAGGTTTAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.29
Consensus pattern (21 bp):
ATAGGCATACGTGACTAGTTG
Found at i:124836 original size:22 final size:22
Alignment explanation
Indices: 124811--124870 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
124801 TTGTATAATT
124811 GGTTTTTAGTCATTGCATGATA
1 GGTTTTTAGTCATTGCATGATA
* * *
124833 GGTTTTTAGGCATTGCATGTTT
1 GGTTTTTAGTCATTGCATGATA
* *
124855 GATTTTTAGTTATTGC
1 GGTTTTTAGTCATTGC
124871 GTGACTGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.18, C:0.08, G:0.23, T:0.50
Consensus pattern (22 bp):
GGTTTTTAGTCATTGCATGATA
Found at i:124879 original size:22 final size:22
Alignment explanation
Indices: 124854--124922 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
124844 ATTGCATGTT
*
124854 TGATTTTTAGTTATTGCGTGAC
1 TGATTTTTAGTAATTGCGTGAC
* * * *
124876 TGATTTCTAAGGAATTACGTGAA
1 TGATTT-TTAGTAATTGCGTGAC
* *
124899 TGGTTTTTAGTCATTGCGTGAC
1 TGATTTTTAGTAATTGCGTGAC
124921 TG
1 TG
124923 CTTGATAGGG
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
22 19 0.54
23 16 0.46
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (22 bp):
TGATTTTTAGTAATTGCGTGAC
Found at i:124937 original size:23 final size:22
Alignment explanation
Indices: 124910--124989 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 22
124900 GGTTTTTAGT
*
124910 CATTGCGTGACTGCTTGATAGGG
1 CATTGCATGACTGCTTGATA-GG
* *
124933 CATTGCATGATTAGGTCT-A-AGG
1 CATTGCATGACT-GCT-TGATAGG
* *
124955 CATTACGTGACTGCTTGATAAGG
1 CATTGCATGACTGCTTGAT-AGG
124978 CATTGCATGACT
1 CATTGCATGACT
124990 ATTTTCTGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 1 0.02
21 3 0.07
22 11 0.26
23 24 0.56
24 3 0.07
25 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (22 bp):
CATTGCATGACTGCTTGATAGG
Found at i:128735 original size:23 final size:22
Alignment explanation
Indices: 128709--128758 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
128699 AATCATTACG
128709 TGACTAGCTGATAAGGCATTGCC
1 TGACTAGCTGAT-AGGCATTGCC
* *
128732 TGACTGGTTGATAGGCATTGCC
1 TGACTAGCTGATAGGCATTGCC
128754 TGACT
1 TGACT
128759 TAGGCATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (22 bp):
TGACTAGCTGATAGGCATTGCC
Found at i:140818 original size:5 final size:5
Alignment explanation
Indices: 140804--140839 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
140794 AATTTATATT
*
140804 TTATC TTATC ATATC TTATC TTATC TTATC TT-TC TT
1 TTATC TTATC TTATC TTATC TTATC TTATC TTATC TT
140840 TCGAGGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATC
Found at i:140822 original size:15 final size:15
Alignment explanation
Indices: 140799--140839 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
140789 AACTCAATTT
*
140799 ATATTTTATCTTATC
1 ATATCTTATCTTATC
140814 ATATCTTATCTTATC
1 ATATCTTATCTTATC
*
140829 TTATCTT-TCTT
1 ATATCTTATCTT
140840 TCGAGGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61
Consensus pattern (15 bp):
ATATCTTATCTTATC
Found at i:144950 original size:20 final size:20
Alignment explanation
Indices: 144925--145000 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
144915 CCAAACGAAT
144925 ATCTTTAAAACTTAATAAAC
1 ATCTTTAAAACTTAATAAAC
144945 ATCTTTAAAACTTAATAAAC
1 ATCTTTAAAACTTAATAAAC
* *
144965 TTCTTTTAAACTTAATAAAC
1 ATCTTTAAAACTTAATAAAC
*
144985 TTCTTTAAAACTTAAT
1 ATCTTTAAAACTTAAT
145001 NNNNNNNNNN
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (20 bp):
ATCTTTAAAACTTAATAAAC
Found at i:148362 original size:19 final size:22
Alignment explanation
Indices: 148326--148371 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 22
148316 TTTAATAAGA
148326 TTTCTTCTCTCCTCCTAAATAC
1 TTTCTTCTCTCCTCCTAAATAC
*
148348 TTTCTT-TC-CCT-CTAAATAT
1 TTTCTTCTCTCCTCCTAAATAC
148367 TTTCT
1 TTTCT
148372 CTTATACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 12 0.52
20 3 0.13
21 2 0.09
22 6 0.26
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTCTTCTCTCCTCCTAAATAC
Found at i:149036 original size:23 final size:23
Alignment explanation
Indices: 148970--149036 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
148960 CAAAAAAAAA
* *
148970 TAAAAAAACCTTACCAACCAATT
1 TAAAAAAACCCTAACAACCAATT
** * *
148993 TCAAATGAA-CCTTACATCCAATT
1 T-AAAAAAACCCTAACAACCAATT
149016 TAAAAAAACCCTAACAACCAA
1 TAAAAAAACCCTAACAACCAA
149037 AAAGCCATAA
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
22 5 0.16
23 22 0.69
24 5 0.16
ACGTcount: A:0.51, C:0.27, G:0.01, T:0.21
Consensus pattern (23 bp):
TAAAAAAACCCTAACAACCAATT
Found at i:149330 original size:9 final size:9
Alignment explanation
Indices: 149313--149346 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
149303 ACAGCAAACT
149313 ATAAAAATA
1 ATAAAAATA
*
149322 ATAATAATA
1 ATAAAAATA
*
149331 ACAAAAATA
1 ATAAAAATA
149340 ATAAAAA
1 ATAAAAA
149347 AGTTTAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (9 bp):
ATAAAAATA
Found at i:150457 original size:20 final size:19
Alignment explanation
Indices: 150425--150470 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
150415 CTTTAATGTT
150425 TTAAAAAAATAATAAAAAA
1 TTAAAAAAATAATAAAAAA
* *
150444 TTAAAAATAGTAATAATAAA
1 TTAAAAA-AATAATAAAAAA
150464 TTAAAAA
1 TTAAAAA
150471 GAAAGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
TTAAAAAAATAATAAAAAA
Found at i:165538 original size:57 final size:58
Alignment explanation
Indices: 165418--165696 Score: 256
Period size: 57 Copynumber: 4.8 Consensus size: 58
165408 ATCGAATATG
* * * * * *
165418 TTTTGAGATAGATCGAGCCTAGTTCAAGTCTAGGAATTTCAATTTTTAAATCAAACCTA
1 TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAA-TTTTAAACCAAACCTA
* *** * *
165477 TTTTGATATAGGTTGGGCCTAGATCAAGTCCA-GAATTCCAATTTTAAACCAAACTTA
1 TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAATTTTAAACCAAACCTA
* ***
165534 TTTTGACATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTA
1 TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAATTTTAAACCAAACCTA
* * * * * * * * * *
165592 TCTTGAGATAAGTCGAGCTTAGATTAAAT-TAGAAATTCTAATTTTAAATCAAACCTA
1 TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAATTTTAAACCAAACCTA
* * * * *
165649 TTTTGATATAGGTCAAACTTAGATCAAATATAGGAATTCCAATTTTAA
1 TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAATTTTAA
165697 GTTGAACTTG
Statistics
Matches: 181, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
57 87 0.48
58 68 0.38
59 26 0.14
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (58 bp):
TTTTGACATAGGTCAAGCCTAGATCAAGTCTAGGAATTCCAATTTTAAACCAAACCTA
Found at i:165577 original size:58 final size:58
Alignment explanation
Indices: 165418--165783 Score: 306
Period size: 58 Copynumber: 6.3 Consensus size: 58
165408 ATCGAATATG
* * * * *
165418 TTTTGAGATAGATCGAGCCTAGTTCAAGTCTAGGAATTTCAATTTTTAAATCAAACCTA
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAA-TTTTAAATCAAACCTA
* *** * * * *
165477 TTTTGATATAGGTTGGGCCTAGATCAAGTCCA-GAATTCCAATTTTAAACCAAACTTA
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATCAAACCTA
* **
165534 TTTTGACATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTA
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATCAAACCTA
* * * * * * *
165592 TCTTGAGATAAGTCGAGCTTAGATTAAAT-TAGAAATTCTAATTTTAAATCAAACCTA
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATCAAACCTA
* * * * * ** * *
165649 TTTTGATATAGGTCAAACTTAGATCAAATATAGGAATTCCAATTTTAAGTTGAACTTG
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATCAAACCTA
* * * * * ** * *
165707 TTTTGAGATAGGTCAAACTTAGATTAAATTTTA-AAATTTTAAAATTTTAAATCGAACTTA
1 TTTTGAGATAGGTCAAGCTTAGA-TCAAGTCTAGGAA--TTCCAATTTTAAATCAAACCTA
165767 TTTTGAGATAGGTCAAG
1 TTTTGAGATAGGTCAAG
165784 GACGAGTCTA
Statistics
Matches: 249, Mismatches: 53, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
57 87 0.35
58 97 0.39
59 32 0.13
60 33 0.13
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (58 bp):
TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATCAAACCTA
Found at i:165635 original size:115 final size:115
Alignment explanation
Indices: 165418--165783 Score: 385
Period size: 115 Copynumber: 3.1 Consensus size: 115
165408 ATCGAATATG
* * * * * **
165418 TTTTGAGATAGATCGAGCCTAGTTCAAGTCTAGGAATTTCAATTTTTAAATCAAACCTATTTTGA
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAA-TTTTAAATTGAACCTATTTTGA
* * * * * * * * *
165483 TATAGGTTGGGCCTAGATCAAGTCCAG-AATTCCAATTTTAAACCAAACTTA
65 GATAGGTCGAGCTTAGATTAAAT-TAGAAATTCTAATTTTAAATCAAACTTA
* *
165534 TTTTGACATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTATCTTGAG
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTATTTTGAG
* *
165599 ATAAGTCGAGCTTAGATTAAATTAGAAATTCTAATTTTAAATCAAACCTA
66 ATAGGTCGAGCTTAGATTAAATTAGAAATTCTAATTTTAAATCAAACTTA
* * * * * * *
165649 TTTTGATATAGGTCAAACTTAGATCAAATATAGGAATTCCAATTTTAAGTTGAACTTGTTTTGAG
1 TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTATTTTGAG
* * * *
165714 ATAGGTCAAACTTAGATTAAATTTTA-AAATTTTAAAATTTTAAATCGAACTTA
66 ATAGGTCGAGCTTAGATTAAA--TTAGAAATTCT--AATTTTAAATCAAACTTA
165767 TTTTGAGATAGGTCAAG
1 TTTTGAGATAGGTCAAG
165784 GACGAGTCTA
Statistics
Matches: 209, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
114 2 0.01
115 131 0.63
116 42 0.20
117 3 0.01
118 31 0.15
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (115 bp):
TTTTGAGATAGGTCAAGCTTAGATCAAGTCTAGGAATTCCAATTTTAAATTGAACCTATTTTGAG
ATAGGTCGAGCTTAGATTAAATTAGAAATTCTAATTTTAAATCAAACTTA
Found at i:165758 original size:7 final size:8
Alignment explanation
Indices: 165732--165757 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
165722 AACTTAGATT
165732 AAATTTTA
1 AAATTTTA
165740 AAATTTTA
1 AAATTTTA
165748 AAATTTTA
1 AAATTTTA
165756 AA
1 AA
165758 TCGAACTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
AAATTTTA
Found at i:166477 original size:17 final size:18
Alignment explanation
Indices: 166443--166480 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
166433 TTGTCCATAT
166443 AAAAGAAAGTCTTAAAAA
1 AAAAGAAAGTCTTAAAAA
166461 AAAAGAAAGTCTTAAAAA
1 AAAAGAAAGTCTTAAAAA
166479 AA
1 AA
166481 CCTTAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAGAAAGTCTTAAAAA
Found at i:166559 original size:23 final size:23
Alignment explanation
Indices: 166495--166559 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
166485 AAAACCTCAT
*
166495 AAAAAACCTTAGCAGCCAATTTCA
1 AAAAAACC-TAGCAACCAATTTCA
* * * *
166519 AATGAATCTTA-CATCCAATTTCA
1 AA-AAAACCTAGCAACCAATTTCA
166542 AAAAAACCTAGCAACCAA
1 AAAAAACCTAGCAACCAA
166560 AAAGCCATAA
Statistics
Matches: 31, Mismatches: 8, Indels: 5
0.70 0.18 0.11
Matches are distributed among these distances:
22 5 0.16
23 19 0.61
24 4 0.13
25 3 0.10
ACGTcount: A:0.48, C:0.25, G:0.06, T:0.22
Consensus pattern (23 bp):
AAAAAACCTAGCAACCAATTTCA
Found at i:169231 original size:30 final size:30
Alignment explanation
Indices: 169194--169272 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
169184 ATCGAATTGA
* * *
169194 GAGATTCATATTATGAATCGTTATCGAGTC
1 GAGATTCATATTGTGAATCGTTATCAAATC
* * *
169224 TAGATTCAAAATGTGAATCGTTATCAAATC
1 GAGATTCATATTGTGAATCGTTATCAAATC
169254 GAGATTCATATTGTGAATC
1 GAGATTCATATTGTGAATC
169273 AAAATCTTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (30 bp):
GAGATTCATATTGTGAATCGTTATCAAATC
Found at i:169827 original size:20 final size:19
Alignment explanation
Indices: 169802--169841 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
169792 ATATAAACTG
169802 AAAGAATAACTATAAAAGAA
1 AAAGAATAACTAT-AAAGAA
169822 AAAGAATAACTATAAAGAA
1 AAAGAATAACTATAAAGAA
169841 A
1 A
169842 GTATTTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.70, C:0.05, G:0.10, T:0.15
Consensus pattern (19 bp):
AAAGAATAACTATAAAGAA
Found at i:170591 original size:167 final size:167
Alignment explanation
Indices: 170315--170648 Score: 641
Period size: 167 Copynumber: 2.0 Consensus size: 167
170305 TTACAATCTT
*
170315 TTGTATTAACTTTTCAAATGTTGTAGTAAAAAGAGCTTTGGTGAATAAATCTACTAGATTGTCAC
1 TTGTATTAACTTTTCAAATGTTGTAGTAAAAAAAGCTTTGGTGAATAAATCTACTAGATTGTCAC
*
170380 TTCAATGAATTTGTTGAACACTAATATCACCCTTGGCTTGGAGATTATGAGTGAAAAAGAATTTT
66 TTCAATGAATTTGTTGAACACTAATATAACCCTTGGCTTGGAGATTATGAGTGAAAAAGAATTTT
170445 GACAAAATATGTTTTGTACTATCGCATTTAATATATC
131 GACAAAATATGTTTTGTACTATCGCATTTAATATATC
170482 TTGTATTAACTTTTCAAATGTTGTAGTAAAAAAAGCTTTGGTGAATAAATCTACTAGATTGTCAC
1 TTGTATTAACTTTTCAAATGTTGTAGTAAAAAAAGCTTTGGTGAATAAATCTACTAGATTGTCAC
*
170547 TTCAGTGAATTTGTTGAACACTAATATAACCCTTGGCTTGGAGATTATGAGTGAAAAAGAATTTT
66 TTCAATGAATTTGTTGAACACTAATATAACCCTTGGCTTGGAGATTATGAGTGAAAAAGAATTTT
170612 GACAAAATATGTTTTGTACTATCGCATTTAATATATC
131 GACAAAATATGTTTTGTACTATCGCATTTAATATATC
170649 CTTCCTTTAA
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 164 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (167 bp):
TTGTATTAACTTTTCAAATGTTGTAGTAAAAAAAGCTTTGGTGAATAAATCTACTAGATTGTCAC
TTCAATGAATTTGTTGAACACTAATATAACCCTTGGCTTGGAGATTATGAGTGAAAAAGAATTTT
GACAAAATATGTTTTGTACTATCGCATTTAATATATC
Found at i:172976 original size:11 final size:11
Alignment explanation
Indices: 172960--172986 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
172950 AGCAACAAAC
172960 TATTCAATAGT
1 TATTCAATAGT
172971 TATTCAATAGT
1 TATTCAATAGT
172982 TATTC
1 TATTC
172987 TATCTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.48
Consensus pattern (11 bp):
TATTCAATAGT
Found at i:176859 original size:83 final size:83
Alignment explanation
Indices: 176757--176922 Score: 296
Period size: 83 Copynumber: 2.0 Consensus size: 83
176747 AATGCTTCCT
* *
176757 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAATCAAGGTGTAAAGTGTTTTCTTGCA
1 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAACTGTTTTCTTGCA
*
176822 TATTACTTTGTGTGAAAA
66 TATTACTTTGTATGAAAA
176840 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAACTGTTTTCTTGCA
1 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAACTGTTTTCTTGCA
*
176905 TATTAGTTTGTATGAAAA
66 TATTACTTTGTATGAAAA
176923 TAGACACTGG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (83 bp):
CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAACTGTTTTCTTGCA
TATTACTTTGTATGAAAA
Found at i:176898 original size:43 final size:43
Alignment explanation
Indices: 176767--176898 Score: 121
Period size: 43 Copynumber: 3.1 Consensus size: 43
176757 CCAAGCTGTT
* *
176767 TGTTTTATACATTCTGCTTGTGTTTCAAAATCAAGGTGTAAAG
1 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAC
* * * * * * * *
176810 TGTTTTCTTGCATAT-TACTT-TGTGTGAAAACCAAGCTGT---T
1 TGTTTT-ATACAT-TCTGCTTGTGTTTCAAAAACAAGGTGTAAAC
176850 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAC
1 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAC
176893 TGTTTT
1 TGTTTT
176899 CTTGCATATT
Statistics
Matches: 66, Mismatches: 16, Indels: 14
0.69 0.17 0.15
Matches are distributed among these distances:
38 1 0.02
39 8 0.12
40 21 0.32
43 27 0.41
44 8 0.12
45 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (43 bp):
TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAC
Found at i:185517 original size:26 final size:26
Alignment explanation
Indices: 185480--185531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
185470 TTATAAGCAC
*
185480 CTATCCATTTTTTAG-GGTAAAATTAT
1 CTATCCA-CTTTTAGTGGTAAAATTAT
185506 CTATCCACTTTTAGTGGTAAAATTAT
1 CTATCCACTTTTAGTGGTAAAATTAT
185532 TCTTAAATNN
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (26 bp):
CTATCCACTTTTAGTGGTAAAATTAT
Found at i:189612 original size:31 final size:33
Alignment explanation
Indices: 189538--189613 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 33
189528 AAAAGATTAA
*
189538 ATTAAAATATTTATAATTAAATACAATTATATT
1 ATTAAAATATTTATAATTAAATACAATTATAAT
*
189571 ATT-CAA-ATTTATAA-TAAA-A-AATTATAAAT
1 ATTAAAATATTTATAATTAAATACAATTAT-AAT
*
189600 ATTATAATATTTAT
1 ATTAAAATATTTAT
189614 CAAATGTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
28 6 0.16
29 6 0.16
30 6 0.16
31 14 0.38
32 2 0.05
33 3 0.08
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (33 bp):
ATTAAAATATTTATAATTAAATACAATTATAAT
Found at i:194741 original size:15 final size:14
Alignment explanation
Indices: 194706--194746 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
194696 TTTTATAATT
* *
194706 AATTATTAATTAAT
1 AATTATTTATTAAA
194720 AATTATTTATTAAA
1 AATTATTTATTAAA
194734 ATATTATTTATTA
1 A-ATTATTTATTA
194747 TTTTATATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
AATTATTTATTAAA
Found at i:198281 original size:77 final size:77
Alignment explanation
Indices: 198138--198286 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
198128 AGAGAGATTT
* * *
198138 TTGTATTTCTGATGTGATTGTGCAATGCACTCATTGCAATGGCTCTTTACCCATAAATGTTCTAT
1 TTGTATTTCTGATGTGATTGTGCAATGCACTCATTGCAATAGCTCTTTAACCATAAAAGTTCTAT
198203 CTCGGACAGTCC
66 CTCGGACAGTCC
** *
198215 TTGTATCTT-TGATGTGATTGTGCAATGTC-CTTTTTGTAATAGCTCTTTAACCATAAAGAGTT-
1 TTGTAT-TTCTGATGTGATTGTGCAATG-CACTCATTGCAATAGCTCTTTAACCATAAA-AGTTC
*
198277 TATCTTGGAC
63 TATCTCGGAC
198287 GATCTTTTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
77 56 0.90
78 6 0.10
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (77 bp):
TTGTATTTCTGATGTGATTGTGCAATGCACTCATTGCAATAGCTCTTTAACCATAAAAGTTCTAT
CTCGGACAGTCC
Found at i:199916 original size:2 final size:2
Alignment explanation
Indices: 199911--199941 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
199901 ACACACACAC
199911 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
199942 ATTATTCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:200439 original size:2 final size:2
Alignment explanation
Indices: 200432--200461 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
200422 ACAAGATGCT
200432 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
200462 GTAATTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:200522 original size:19 final size:17
Alignment explanation
Indices: 200500--200538 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
200490 TTTAATTCGT
*
200500 TTAATTTTATTTATTTAAA
1 TTAAATTTA-TTA-TTAAA
200519 TTAAATTTATTATTAAA
1 TTAAATTTATTATTAAA
200536 TTA
1 TTA
200539 TTAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 3 0.16
19 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAAATTTATTATTAAA
Found at i:213668 original size:51 final size:53
Alignment explanation
Indices: 213559--213679 Score: 135
Period size: 51 Copynumber: 2.4 Consensus size: 53
213549 AAGCATTTTA
* * *
213559 AGCATTTTTGAA-CGATTTTTGATACATGAAAAAAAAAATCTTTGAATATTTTG
1 AGCA-TTTTGAAGTGATTTTTGATACACGAAAAAAAAAATCTTTGAATAGTTTG
* * * *
213612 AGCATTTTGAAGTGATTTTTGATACACG-AAGAAAAACT-TTTGAGTGGTTTG
1 AGCATTTTGAAGTGATTTTTGATACACGAAAAAAAAAATCTTTGAATAGTTTG
213663 AGCATTTT-AAGT-ATTTT
1 AGCATTTTGAAGTGATTTT
213680 GGAGTGATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
49 5 0.08
50 4 0.07
51 18 0.30
52 15 0.25
53 18 0.30
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (53 bp):
AGCATTTTGAAGTGATTTTTGATACACGAAAAAAAAAATCTTTGAATAGTTTG
Found at i:213900 original size:22 final size:22
Alignment explanation
Indices: 213848--213917 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
213838 GTATTGTGTA
* *
213848 ACTAACTTTTAAGCATTGCGTG
1 ACTAATTTTTAAGCATTGCATG
* * *
213870 ATTAGTTTTTAAGCATTGCATT
1 ACTAATTTTTAAGCATTGCATG
* *
213892 ACTAATTTTTAAACATTTCATG
1 ACTAATTTTTAAGCATTGCATG
213914 ACTA
1 ACTA
213918 GTTGATAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (22 bp):
ACTAATTTTTAAGCATTGCATG
Found at i:214154 original size:22 final size:21
Alignment explanation
Indices: 214080--214160 Score: 54
Period size: 22 Copynumber: 3.7 Consensus size: 21
214070 TTAGTCACGT
*
214080 AATACCTAAAAACTAGTCTCAC
1 AATACCTAAAAACTAGTAT-AC
* ** * *
214102 AATACTTAAAAGTTAGTGACAT
1 AATACCTAAAAACTAGT-ATAC
**
214124 AATGTCTAAAAACTAGTAATAC
1 AATACCTAAAAACTAGT-ATAC
*
214146 AATACCTAATAACTA
1 AATACCTAAAAACTA
214161 ACTGGTTTAC
Statistics
Matches: 41, Mismatches: 17, Indels: 2
0.68 0.28 0.03
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.27
Consensus pattern (21 bp):
AATACCTAAAAACTAGTATAC
Found at i:215268 original size:23 final size:23
Alignment explanation
Indices: 215197--215280 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
215187 ATTTTTAAAT
* * *
215197 ATTGTGTGATTGATTGATAGGAC
1 ATTGCGTGATTGGTTAATAGGAC
* * * *
215220 ATTTCGTGATTAGTTAGTA-AAGC
1 ATTGCGTGATTGGTTAATAGGA-C
215243 ATTGCGTGATTGGTTAATAGGAC
1 ATTGCGTGATTGGTTAATAGGAC
215266 ATTGCGTGATTGGTT
1 ATTGCGTGATTGGTT
215281 TTTAAGCATT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
22 1 0.02
23 46 0.96
24 1 0.02
ACGTcount: A:0.25, C:0.07, G:0.29, T:0.39
Consensus pattern (23 bp):
ATTGCGTGATTGGTTAATAGGAC
Found at i:216616 original size:94 final size:94
Alignment explanation
Indices: 216426--216674 Score: 330
Period size: 97 Copynumber: 2.6 Consensus size: 94
216416 CCACCCCGGC
* *
216426 GGCCGCAGGGGGAA-TGGGACTCGTGGGAGCC-GAGGGGGGCGGGCAGCGCCGCA-GGGGGAACC
1 GGCCGCAGGGGGAACCGGGACTCGTGGGAGCCGGA-GGGGGCGGGCAGGGCCGCAGGGGGGAACC
*
216488 GGGACTCGTGGGAGCCGGAGGGGGGCGGGTAG
65 GGGA--CGTGGGAGCCGGAGGGGGGCGGGCAG
*
216520 GGCCGCAGGGGGGAACCGGGACTCGTGGGAGCCGGAGGAGGGC-GACAGGGCCGCAGGGGGGAAC
1 GGCCGCA-GGGGGAACCGGGACTCGTGGGAGCCGGAGG-GGGCGGGCAGGGCCGCAGGGGGGAAC
216584 CGGG-CGTGGGAGCCGGAGGAGGGGC-GGCAG
64 CGGGACGTGGGAGCCGGAGG-GGGGCGGGCAG
216614 GGCCGCAGGGGGAACCGGGACTCGGCCGTGGGAGCCGGAGGGGGCGGGCAGGGCCGCAGGG
1 GGCCGCAGGGGGAACCGGGACT----CGTGGGAGCCGGAGGGGGCGGGCAGGGCCGCAGGG
216675 CGAAAGGCGT
Statistics
Matches: 139, Mismatches: 5, Indels: 19
0.85 0.03 0.12
Matches are distributed among these distances:
93 15 0.11
94 33 0.24
95 12 0.09
96 32 0.23
97 47 0.34
ACGTcount: A:0.15, C:0.23, G:0.57, T:0.04
Consensus pattern (94 bp):
GGCCGCAGGGGGAACCGGGACTCGTGGGAGCCGGAGGGGGCGGGCAGGGCCGCAGGGGGGAACCG
GGACGTGGGAGCCGGAGGGGGGCGGGCAG
Found at i:218418 original size:110 final size:110
Alignment explanation
Indices: 218225--218437 Score: 390
Period size: 110 Copynumber: 1.9 Consensus size: 110
218215 ATGATCCCCA
218225 TTTTTGGACTGATTTTGACAGTAAACCTCACAACTATTTATTCCTTAAAATAATTTATTATAAGA
1 TTTTTGGACTGATTTTGACAGTAAACCTCACAACTATTTATTCCTTAAAATAATTTATTATAAGA
* *
218290 CATAAATTACAAGCTAAACGAATTACAATATATTAAAAACCCCTT
66 CATAAATTACAAGCTAAACAAATTAAAATATATTAAAAACCCCTT
*
218335 TTTTTGGACTGATTTTGACAGTAAACCTCAGAACTATTTATTCCTTAAAATAATTTATTATAAGA
1 TTTTTGGACTGATTTTGACAGTAAACCTCACAACTATTTATTCCTTAAAATAATTTATTATAAGA
*
218400 TATAAATTACAAGCTAAACAAATTAAAATATATTAAAA
66 CATAAATTACAAGCTAAACAAATTAAAATATATTAAAA
218438 TTAGGTGAAT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 99 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.36
Consensus pattern (110 bp):
TTTTTGGACTGATTTTGACAGTAAACCTCACAACTATTTATTCCTTAAAATAATTTATTATAAGA
CATAAATTACAAGCTAAACAAATTAAAATATATTAAAAACCCCTT
Found at i:226232 original size:4 final size:4
Alignment explanation
Indices: 226225--226255 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
226215 TATATATATT
226225 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
226256 ATATCATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:230177 original size:76 final size:74
Alignment explanation
Indices: 230094--230234 Score: 212
Period size: 76 Copynumber: 1.9 Consensus size: 74
230084 TTCTTTTCTA
* *
230094 ACCAAGTATTTTGTTTCTACTTTATTCATGTTTTATTCAATCAACA-ATTCAAATATACCTTTCT
1 ACCAAGTATTTTGTTTCTACTTTATTCATGTTTCATTCAAT-AA-AGATTCAAA-ACACCTTTCT
230158 TTTAAATAATTC
63 TTTAAATAATTC
* *
230170 ACCAAGTATTTTGTTTCTATTTTATTCATGTTTCATTCAATAAAGATTCAAAGCACCTTTCTTTT
1 ACCAAGTATTTTGTTTCTACTTTATTCATGTTTCATTCAATAAAGATTCAAAACACCTTTCTTTT
230235 TAACAATATG
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
74 12 0.20
75 9 0.15
76 39 0.65
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.48
Consensus pattern (74 bp):
ACCAAGTATTTTGTTTCTACTTTATTCATGTTTCATTCAATAAAGATTCAAAACACCTTTCTTTT
AAATAATTC
Found at i:231417 original size:133 final size:133
Alignment explanation
Indices: 231179--231445 Score: 462
Period size: 133 Copynumber: 2.0 Consensus size: 133
231169 ATTAATAACA
* *
231179 ATTATTCCCAATTGAAATATCTATTAGCTAAAGTGTACAATTCTTGCAGTTTAGACCAGGTTGCC
1 ATTATTCCCAATTGAAATATCTACTAGCTAAAGAGTACAATTCTTGCAGTTTAGACCAGGTTGCC
** * *
231244 CAAATAATTAAAATATCGTGTATAATTACACTTAATGCAAACCAGAATGTCAAGGAGTGAATCTA
66 CAAATAATTAAAATATCACGTAAAATTACACTTAATGCAAACCAGAATGTCAAGAAGTGAATCTA
231309 TGT
131 TGT
*
231312 ATTATTCCCAATTGAAATATCTACTAGCTAAAGAGTACAATTTTTGCAGTTTAGACCAGGTTGCC
1 ATTATTCCCAATTGAAATATCTACTAGCTAAAGAGTACAATTCTTGCAGTTTAGACCAGGTTGCC
*
231377 CAAATAATTAAAATATCACGTAAAATTACACTTAATGCAAACCAGAATGTCAAGAAGTGAATCTC
66 CAAATAATTAAAATATCACGTAAAATTACACTTAATGCAAACCAGAATGTCAAGAAGTGAATCTA
231442 TGT
131 TGT
231445 A
1 A
231446 ACATACACCA
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 126 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (133 bp):
ATTATTCCCAATTGAAATATCTACTAGCTAAAGAGTACAATTCTTGCAGTTTAGACCAGGTTGCC
CAAATAATTAAAATATCACGTAAAATTACACTTAATGCAAACCAGAATGTCAAGAAGTGAATCTA
TGT
Found at i:238618 original size:28 final size:28
Alignment explanation
Indices: 238557--238634 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
238547 TCGAACTATG
*
238557 AATTCAAATATATTTGACTTCTTTTTTAA
1 AATTCAAATATATTTGA-TTTTTTTTTAA
*
238586 AATTCAAATATATTTGATTTTTTTTTTA
1 AATTCAAATATATTTGATTTTTTTTTAA
* *
238614 AATTCAAATGTATTTAATTTT
1 AATTCAAATATATTTGATTTT
238635 ATTAATGATT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 28 0.62
29 17 0.38
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (28 bp):
AATTCAAATATATTTGATTTTTTTTTAA
Found at i:241716 original size:16 final size:15
Alignment explanation
Indices: 241691--241721 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
241681 TATTTTTTGT
241691 TTTAAAATAATAATA
1 TTTAAAATAATAATA
241706 TTTATAAATAATAATA
1 TTTA-AAATAATAATA
241722 CAAATTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTTAAAATAATAATA
Found at i:243109 original size:15 final size:16
Alignment explanation
Indices: 243089--243121 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
243079 TTTATTTCCA
*
243089 TTTTATT-TTTATTTT
1 TTTTATTATTAATTTT
243104 TTTTATTATTAATTTT
1 TTTTATTATTAATTTT
243120 TT
1 TT
243122 GATTGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTATTATTAATTTT
Found at i:257582 original size:21 final size:21
Alignment explanation
Indices: 257558--257598 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
257548 TATTGAACAA
*
257558 TTTTTGTATATTTTATAATAG
1 TTTTTGTATACTTTATAATAG
*
257579 TTTTTGTATACTTTGTAATA
1 TTTTTGTATACTTTATAATA
257599 AATATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (21 bp):
TTTTTGTATACTTTATAATAG
Found at i:257953 original size:2 final size:2
Alignment explanation
Indices: 257946--257972 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
257936 CTTATTTTAT
257946 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
257973 TATACCATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:266561 original size:51 final size:51
Alignment explanation
Indices: 266506--266606 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
266496 TTAAGGGTTA
266506 AAATATTGAAATGTAAAGTGTACCTAAGAAGGGAGAGCAAGATAAACTATG
1 AAATATTGAAATGTAAAGTGTACCTAAGAAGGGAGAGCAAGATAAACTATG
266557 AAATATTGAAATGTAAAGTGTACCTAAGAAGGGAGAGCAAGATAAACTAT
1 AAATATTGAAATGTAAAGTGTACCTAAGAAGGGAGAGCAAGATAAACTAT
266607 ATATTTTAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.22
Consensus pattern (51 bp):
AAATATTGAAATGTAAAGTGTACCTAAGAAGGGAGAGCAAGATAAACTATG
Found at i:285709 original size:37 final size:37
Alignment explanation
Indices: 285659--285751 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
285649 CAAAAGGTAG
* *
285659 AGAGGTTGTGCTTGATCCTTAAAATGCATTTAG-TTGT
1 AGAGGTTGTGCTTGATCCTTAAAAGGCA-ATAGCTTGT
* *
285696 AGAGGTTGGGCTTGATCCTTAAAAGGCAATGGCTTGT
1 AGAGGTTGTGCTTGATCCTTAAAAGGCAATAGCTTGT
*
285733 AAAGGTTGTGCTTGATCCT
1 AGAGGTTGTGCTTGATCCT
285752 AAAGATATAG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
36 2 0.04
37 47 0.96
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (37 bp):
AGAGGTTGTGCTTGATCCTTAAAAGGCAATAGCTTGT
Found at i:304913 original size:21 final size:24
Alignment explanation
Indices: 304863--304930 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 24
304853 TTTTTGATTT
*
304863 TTAAATAAAAATGAATAAAAAAGG
1 TTAAATAAAAATGAATAAAAAAGC
304887 TT--ATAAAAAT-AAT-AAAAA-C
1 TTAAATAAAAATGAATAAAAAAGC
304906 TTAAATAAAAAATTGAATAATAAAA
1 TTAAAT-AAAAA-TGAATAA-AAAA
304931 AAATCAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 5 0.14
22 13 0.36
23 1 0.03
24 5 0.14
25 1 0.03
26 4 0.11
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.25
Consensus pattern (24 bp):
TTAAATAAAAATGAATAAAAAAGC
Found at i:310253 original size:2 final size:2
Alignment explanation
Indices: 310246--310281 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
310236 CATTACTTGG
310246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
310282 GTCTAAATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:314370 original size:61 final size:61
Alignment explanation
Indices: 314275--314591 Score: 440
Period size: 61 Copynumber: 5.2 Consensus size: 61
314265 AAAGGTCGTC
*
314275 TCTTCCAGGATGGGAAATCTATCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
1 TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
*
314336 TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTCGCTGCTGTTCCTTAACACT
1 TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
** * * * *
314397 TCTTCCAGGATATGAAATCTGTCCTATTTGGAACTATCTTTTGCCGCTGTTCCTTAACACT
1 TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
* * * * *
314458 TGC-TCCAGGAAGGGAAATCTGTCCTGTTTGGAACCATTCTTTGCTTCTGTTCCTGAACACC
1 T-CTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
* * * * *
314519 TCTTCCAGGTTGAGAAATCTGTCCTGTTTGGAGCCATTTTTTGCTGCTGTTCCGTAATA-T
1 TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
314579 CTCTTCCAGGATG
1 -TCTTCCAGGATG
314592 TTTGTTTCGC
Statistics
Matches: 222, Mismatches: 31, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
60 1 0.00
61 220 0.99
62 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (61 bp):
TCTTCCAGGATGGGAAATCTGTCCTGTTTGGAACCATTTTTTGCTGCTGTTCCTTAACACT
Found at i:315485 original size:12 final size:12
Alignment explanation
Indices: 315468--315497 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
315458 TTTTCTACGT
315468 CCACGATCATGA
1 CCACGATCATGA
*
315480 CCACGATTATGA
1 CCACGATCATGA
315492 CCACGA
1 CCACGA
315498 CCAAAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (12 bp):
CCACGATCATGA
Found at i:316339 original size:40 final size:40
Alignment explanation
Indices: 316281--316398 Score: 121
Period size: 46 Copynumber: 2.8 Consensus size: 40
316271 AAATTGAACT
* *
316281 TCGACTTTGTGAATCTTGAGGGTAAGAGATTATAAG-ATTG
1 TCGACTTTGTGAAGCTTGAGGGTAAGAGATTAT-AGTATCG
316321 TCGACTTTGTGAAGCTTGAGGGTGAAGGTGAGAGATTATAGTATCG
1 TCGACTTTGTGAAGCTTGAGGGT--A----AGAGATTATAGTATCG
* * *
316367 TTGACTTTGTAAAGCTTGAGGGTAAAAGATTA
1 TCGACTTTGTGAAGCTTGAGGGTAAGAGATTA
316399 GAGGATAGTG
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
40 29 0.44
42 1 0.02
44 1 0.02
45 2 0.03
46 33 0.50
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (40 bp):
TCGACTTTGTGAAGCTTGAGGGTAAGAGATTATAGTATCG
Found at i:317058 original size:20 final size:20
Alignment explanation
Indices: 317033--317071 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
317023 GAATAAAATA
*
317033 ATAAATTTAAAATTTATCTC
1 ATAAATTTAAAACTTATCTC
*
317053 ATAAATTTATAACTTATCT
1 ATAAATTTAAAACTTATCT
317072 ACTTGCCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAAATTTAAAACTTATCTC
Found at i:334862 original size:2 final size:2
Alignment explanation
Indices: 334855--334887 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
334845 CATCCTGCAA
*
334855 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
334888 GATAGATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:334892 original size:10 final size:10
Alignment explanation
Indices: 334855--334896 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
334845 CATCCTGCAA
*
334855 ATATATATAT
1 ATATATAGAT
*
334865 ATATATATAT
1 ATATATAGAT
334875 ATATATAGAT
1 ATATATAGAT
*
334885 ATAGATAGAT
1 ATATATAGAT
334895 AT
1 AT
334897 TTCATTCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (10 bp):
ATATATAGAT
Found at i:336050 original size:24 final size:24
Alignment explanation
Indices: 336004--336051 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
335994 TTGATGATAT
* *
336004 CTCCTTTCCATATGTATAGAATCA
1 CTCCTTTCCATATGTACAAAATCA
336028 CTCCTTTCCATATGTACAAAATCA
1 CTCCTTTCCATATGTACAAAATCA
336052 TTGACTTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (24 bp):
CTCCTTTCCATATGTACAAAATCA
Found at i:342620 original size:17 final size:16
Alignment explanation
Indices: 342594--342632 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
342584 GTATTATTTC
342594 TTTTTTTTTC-TTTCTA
1 TTTTTTTTTCATTT-TA
342610 TTTTGTTTTTCATTTTA
1 TTTT-TTTTTCATTTTA
342627 TTTTTT
1 TTTTTT
342633 ATTTTTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 12 0.57
18 3 0.14
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTCATTTTA
Found at i:344832 original size:2 final size:2
Alignment explanation
Indices: 344825--344850 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
344815 TACATGTTCA
344825 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
344851 TAATGTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:349538 original size:5 final size:5
Alignment explanation
Indices: 349530--349556 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
349520 CTTACCCGCC
349530 CTTCT CTTCT CTTCT CTTCT CTTCT CT
1 CTTCT CTTCT CTTCT CTTCT CTTCT CT
349557 CGCCTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTTCT
Found at i:349563 original size:15 final size:15
Alignment explanation
Indices: 349528--349568 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
349518 TGCTTACCCG
349528 CCCTTCTCTTCTCTT
1 CCCTTCTCTTCTCTT
*
349543 CTCTTCTCTTCTC-T
1 CCCTTCTCTTCTCTT
349557 CGCCTTCT-TTCT
1 C-CCTTCTCTTCT
349569 TAACAATTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.00, C:0.44, G:0.02, T:0.54
Consensus pattern (15 bp):
CCCTTCTCTTCTCTT
Found at i:354487 original size:13 final size:13
Alignment explanation
Indices: 354469--354505 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
354459 AGATCTCCTG
354469 TGAATGAAAAGTT
1 TGAATGAAAAGTT
354482 TGAATG--AA-TT
1 TGAATGAAAAGTT
354492 TGAATGAAAAGTT
1 TGAATGAAAAGTT
354505 T
1 T
354506 CGGTGTCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 2 0.10
13 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (13 bp):
TGAATGAAAAGTT
Found at i:360171 original size:57 final size:57
Alignment explanation
Indices: 360097--360212 Score: 182
Period size: 57 Copynumber: 2.0 Consensus size: 57
360087 CGACAAAGCA
*
360097 AATGAGAGCCTGAAATACCAAGTTAGACAACTCAT-TTTAATTAGAAATTCAATTTAG
1 AATGAGAGCCTGAAATACCAAGTTAGACAACTCATATTT-ATCAGAAATTCAATTTAG
*
360154 AATGAGAGGCC-GGAATACCAAGTTAGACAACTCATATTTATCAGAAATTCAATTTAG
1 AATGAGA-GCCTGAAATACCAAGTTAGACAACTCATATTTATCAGAAATTCAATTTAG
360211 AA
1 AA
360213 AAAAGGTAGA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
57 49 0.89
58 6 0.11
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (57 bp):
AATGAGAGCCTGAAATACCAAGTTAGACAACTCATATTTATCAGAAATTCAATTTAG
Found at i:365899 original size:2 final size:2
Alignment explanation
Indices: 365892--365916 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
365882 CAAGTGTGCA
365892 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
365917 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:371985 original size:13 final size:13
Alignment explanation
Indices: 371967--371991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
371957 GCTTATACTT
371967 GCAAAATCTAGTA
1 GCAAAATCTAGTA
371980 GCAAAATCTAGT
1 GCAAAATCTAGT
371992 GTTAATTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (13 bp):
GCAAAATCTAGTA
Found at i:374358 original size:19 final size:18
Alignment explanation
Indices: 374328--374385 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
374318 TATATTTTTT
*
374328 TATATTTA-AATTATTAA
1 TATATTTATAATTATAAA
374345 TATATTTTATAATTATAAA
1 TATA-TTTATAATTATAAA
*
374364 TAAAATTTATAAATT-TAAA
1 T-ATATTTAT-AATTATAAA
374383 TAT
1 TAT
374386 TATAATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 4 0.12
18 5 0.15
19 19 0.56
20 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATATTTATAATTATAAA
Found at i:375005 original size:2 final size:2
Alignment explanation
Indices: 374998--375025 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
374988 ACAAATGATA
374998 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
375026 TAAAAGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:375434 original size:15 final size:16
Alignment explanation
Indices: 375414--375446 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
375404 AAATGTTAAT
*
375414 ATTAAAA-TATATAAA
1 ATTAAAATTAAATAAA
375429 ATTAAAATTAAATAAA
1 ATTAAAATTAAATAAA
375445 AT
1 AT
375447 ATATATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTAAAATTAAATAAA
Found at i:381942 original size:65 final size:67
Alignment explanation
Indices: 381839--382026 Score: 222
Period size: 70 Copynumber: 2.8 Consensus size: 67
381829 CTTTTCTTCG
* * * * *
381839 TTTTTTTGCATTATTGGAAGACTAATTAGTGCCATCTTGTCTT-TTTTTTCTTCAGATTC-TT-T
1 TTTTTTTGCATTATTGGAAGACTAGTTAGTGTCGTCTTGTCTTCTTTCTT-TTCAAATTCTTTGT
381901 TCT
65 TCT
* *
381904 TTTCTTTGCATTATTGGAAAACTAGTTAGTGTCGTCTTGTCTTCTTTCTTTTCAAATTCTTTTTG
1 TTTTTTTGCATTATTGGAAGACTAGTTAGTGTCGTCTTGTCTTCTTTCTTTTCAAATTC--TTTG
381969 TTCTT
64 TTC-T
* *
381974 TTTTTTTGTATTATTGGAAGACT-GATTAATGTCGTCTTGTCTTCTTTCTTTTC
1 TTTTTTTGCATTATTGGAAGACTAG-TTAGTGTCGTCTTGTCTTCTTTCTTTTC
382027 TGCTCCTGTC
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
65 46 0.44
66 5 0.05
68 2 0.02
69 4 0.04
70 48 0.46
ACGTcount: A:0.16, C:0.15, G:0.13, T:0.56
Consensus pattern (67 bp):
TTTTTTTGCATTATTGGAAGACTAGTTAGTGTCGTCTTGTCTTCTTTCTTTTCAAATTCTTTGTT
CT
Found at i:387633 original size:24 final size:24
Alignment explanation
Indices: 387606--387656 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
387596 TTTTGGGAAG
387606 AGGTTTGGGCT-TTGGAAGAGCTTT
1 AGGTTTGGGCTCTT-GAAGAGCTTT
*
387630 AGGTTTGGGCTCTTGAGGAGCTTT
1 AGGTTTGGGCTCTTGAAGAGCTTT
387654 AGG
1 AGG
387657 CTTTTTCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.16, C:0.10, G:0.39, T:0.35
Consensus pattern (24 bp):
AGGTTTGGGCTCTTGAAGAGCTTT
Found at i:387762 original size:13 final size:14
Alignment explanation
Indices: 387734--387767 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
387724 ACGGTCTTGC
*
387734 TTCTTTTGTTCTTT
1 TTCTTTTGTCCTTT
387748 TTCTTTT-TCCTTT
1 TTCTTTTGTCCTTT
387761 TTCTTTT
1 TTCTTTT
387768 CTCTCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (14 bp):
TTCTTTTGTCCTTT
Found at i:396493 original size:30 final size:30
Alignment explanation
Indices: 396457--396516 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
396447 CTTTTACATA
396457 TATATTTTTATTTGGTTTTAAAACAGGAAG
1 TATATTTTTATTTGGTTTTAAAACAGGAAG
396487 TATATTTTTATTTGGTTTTAAAACAGGAAG
1 TATATTTTTATTTGGTTTTAAAACAGGAAG
396517 CAGATTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (30 bp):
TATATTTTTATTTGGTTTTAAAACAGGAAG
Found at i:398581 original size:29 final size:30
Alignment explanation
Indices: 398549--398605 Score: 91
Period size: 29 Copynumber: 1.9 Consensus size: 30
398539 CAAATAAAAT
398549 ATATATTAAT-TATTAATAAT-AATAGTATG
1 ATATATTAATATATT-ATAATGAATAGTATG
398578 ATATATTAATATATTATAATGAATAGTA
1 ATATATTAATATATTATAATGAATAGTA
398606 ATATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (30 bp):
ATATATTAATATATTATAATGAATAGTATG
Found at i:398615 original size:33 final size:29
Alignment explanation
Indices: 398549--398621 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 29
398539 CAAATAAAAT
*
398549 ATATATTAATTATTAATAATAATAGTATG
1 ATATATTAATTATTAATAATAATAGTATA
398578 ATATATTAATATATT-ATAATGAATAGTAATATA
1 ATATATTAAT-TATTAATAAT-AATAG---TATA
398611 ATATATTAATT
1 ATATATTAATT
398622 TAATGTGGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
29 15 0.39
30 9 0.24
32 1 0.03
33 13 0.34
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (29 bp):
ATATATTAATTATTAATAATAATAGTATA
Found at i:398689 original size:16 final size:18
Alignment explanation
Indices: 398651--398699 Score: 66
Period size: 16 Copynumber: 2.8 Consensus size: 18
398641 ATGATATTTT
398651 ATTAATTAATAATAATTA
1 ATTAATTAATAATAATTA
398669 ATTAATTAA-AA-AATTA
1 ATTAATTAATAATAATTA
* *
398685 TTTAATTTATAATAA
1 ATTAATTAATAATAA
398700 AAATATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 4 0.15
18 11 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAATTAATAATAATTA
Found at i:398717 original size:26 final size:25
Alignment explanation
Indices: 398684--398746 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 25
398674 TTAAAAAATT
398684 ATTTAATTTATAATAAAAATATAAAA
1 ATTTAATTTATAATAAAAA-ATAAAA
398710 ATTTAATTTTATATAATAAAAAATAAAA
1 ATTTAA--TT-TATAATAAAAAATAAAA
398738 ATTT-ATTTA
1 ATTTAATTTA
398747 AATTTTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
24 2 0.06
25 2 0.06
26 6 0.18
27 1 0.03
28 12 0.35
29 11 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
ATTTAATTTATAATAAAAAATAAAA
Found at i:398804 original size:27 final size:28
Alignment explanation
Indices: 398773--398825 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
398763 TTAATGACTT
*
398773 ATTTAAATATTACA-CTTTAAAATTTGA
1 ATTTAAATATTACATCTTAAAAATTTGA
*
398800 ATTTAAATATTATATCTTAAAAATTT
1 ATTTAAATATTACATCTTAAAAATTT
398826 ATATCAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (28 bp):
ATTTAAATATTACATCTTAAAAATTTGA
Found at i:445298 original size:27 final size:29
Alignment explanation
Indices: 445268--445359 Score: 75
Period size: 31 Copynumber: 3.2 Consensus size: 29
445258 ATTCATATTG
445268 TTTTAAATA-ATTTAAATAAA-ATTTTAT-
1 TTTT-AATACATTTAAATAAATATTTTATA
* *
445295 TTTTATTACATTTAATTAAATATTTTATA
1 TTTTAATACATTTAAATAAATATTTTATA
* *
445324 TTTTTATTTTA-AATTAAATAAATATTTTATA
1 -TTTTA--ATACATTTAAATAAATATTTTATA
*
445355 ATTTA
1 TTTTA
445360 TAATGAATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
26 3 0.06
27 14 0.26
28 7 0.13
30 9 0.17
31 18 0.33
32 3 0.06
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTTAATACATTTAAATAAATATTTTATA
Found at i:445346 original size:31 final size:30
Alignment explanation
Indices: 445279--445354 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
445269 TTTAAATAAT
*
445279 TTAAATAAA-A-TTT-TATTTTTATTACAT
1 TTAAATAAATATTTTATATTTTTATTACAA
*
445306 TTAATTAAATATTTTATATTTTTATTTTA-AA
1 TTAAATAAATATTTTATATTTTTA--TTACAA
445337 TTAAATAAATATTTTATA
1 TTAAATAAATATTTTATA
445355 ATTTATAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 8 0.20
28 1 0.02
29 3 0.07
30 8 0.20
31 18 0.44
32 3 0.07
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (30 bp):
TTAAATAAATATTTTATATTTTTATTACAA
Found at i:447455 original size:70 final size:69
Alignment explanation
Indices: 447343--447482 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 69
447333 TATTTATACC
447343 CCAATCTGTTAAGAATTTGAAAACTAGACGGTTCCCAAGCAACCAATGATAGAATGCCACATTAG
1 CCAATCTGTTAAGAATTTGAAAACTAGACGGTTCCCAAGCAACCAATGATAGAATGCCACATTAG
447408 GCAT
66 GCAT
*
447412 CCAATCTGTTAAGAATTTTGAAAACTAGACGGTTCCCAGGCAACCAATGATAGAATGCCACATTA
1 CCAATCTGTTAAGAA-TTTGAAAACTAGACGGTTCCCAAGCAACCAATGATAGAATGCCACATTA
447477 GGCAT
65 GGCAT
447482 C
1 C
447483 ACCAGCTTGT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 15 0.22
70 54 0.78
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (69 bp):
CCAATCTGTTAAGAATTTGAAAACTAGACGGTTCCCAAGCAACCAATGATAGAATGCCACATTAG
GCAT
Found at i:447910 original size:27 final size:26
Alignment explanation
Indices: 447880--448047 Score: 77
Period size: 27 Copynumber: 6.2 Consensus size: 26
447870 TATAACAACT
*
447880 TTTTCATCATGACATGTAATAATTATATT
1 TTTTCAT-ATGACATGTAATAATTA-A-A
* * * *
447909 TTTTAATATAACGTGTAACAATTAAA
1 TTTTCATATGACATGTAATAATTAAA
* * **
447935 TCTTCA-ACGTAACATGTAATAACAAAA
1 TTTTCATA--TGACATGTAATAATTAAA
*
447962 TGTTCAATATGACATGTAATAATTAAA
1 TTTTC-ATATGACATGTAATAATTAAA
* * * * **
447989 TTTTTAATATGACGTGTTATAAGTGTA
1 -TTTTCATATGACATGTAATAATTAAA
* * *
448016 TTTTCGAACATGACATGTAACAACTAAA
1 TTTTC--ATATGACATGTAATAATTAAA
448044 TTTT
1 TTTT
448048 TATAAGTTCG
Statistics
Matches: 102, Mismatches: 30, Indels: 15
0.69 0.20 0.10
Matches are distributed among these distances:
25 1 0.01
26 8 0.08
27 50 0.49
28 36 0.35
29 7 0.07
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (26 bp):
TTTTCATATGACATGTAATAATTAAA
Found at i:448032 original size:82 final size:82
Alignment explanation
Indices: 447888--448044 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 82
447878 CTTTTTCATC
* * *
447888 ATGACATGTAATAATTATATTTTTTAATATAACGTGTAACAATTAAATCTTCAACGTAACATGTA
1 ATGACATGTAATAATTATAATTTTTAATATAACGTGTAACAAGTAAATCTTCAACATAACATGTA
*
447953 ATAACAAAATGTTCAAT
66 ACAACAAAATGTTCAAT
* * * ** * *
447970 ATGACATGTAATAATTA-AATTTTTAATATGACGTGTTATAAGTGTATTTTCGAACATGACATGT
1 ATGACATGTAATAATTATAATTTTTAATATAACGTGTAACAAGTAAATCTTC-AACATAACATGT
*
448034 AACAACTAAAT
65 AACAACAAAAT
448045 TTTTATAAGT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
81 26 0.42
82 36 0.58
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (82 bp):
ATGACATGTAATAATTATAATTTTTAATATAACGTGTAACAAGTAAATCTTCAACATAACATGTA
ACAACAAAATGTTCAAT
Found at i:449230 original size:30 final size:29
Alignment explanation
Indices: 449154--449239 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 29
449144 AATTCAAATA
*
449154 AAATAAA-CATTTATACTTTTATTGT-ATT
1 AAATAAATCA-TTATACTTTTATTTTGATT
* *
449182 CAATCAAATCTTTATACTTTTATTTTGATCT
1 AAAT-AAATCATTATACTTTTATTTTGAT-T
* *
449213 AAATAAATCATTGTACTTTCATTTTGA
1 AAATAAATCATTATACTTTTATTTTGA
449240 GTCAAACAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.06
29 17 0.36
30 23 0.49
31 4 0.09
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (29 bp):
AAATAAATCATTATACTTTTATTTTGATT
Found at i:449547 original size:29 final size:28
Alignment explanation
Indices: 449502--449556 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
449492 TTTGACTTAA
449502 AATAAAAAAAATAAATTTAATTAAATAT
1 AATAAAAAAAATAAATTTAATTAAATAT
*
449530 AATAAAAATATAA-AAATTTATTTAAAT
1 AATAAAAA-A-AATAAATTTAATTAAAT
449557 TTATTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 14 0.58
30 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
AATAAAAAAAATAAATTTAATTAAATAT
Found at i:458423 original size:23 final size:23
Alignment explanation
Indices: 458330--458502 Score: 149
Period size: 23 Copynumber: 7.7 Consensus size: 23
458320 ATGTGTTAAC
*
458330 ACATGACATGTAACATTTTTACTGA
1 ACATGACGTGTAACATTTTT--TGA
* * * *
458355 ACATGGCGTATGACAATTTTTGA
1 ACATGACGTGTAACATTTTTTGA
** *
458378 ATTTG-CGTGTAACA-CTTTTGA
1 ACATGACGTGTAACATTTTTTGA
*
458399 ACATGACGTGTAGCATTTTTTGA
1 ACATGACGTGTAACATTTTTTGA
* * *
458422 AC-TTACGCGT-A-ATTTTTTTA
1 ACATGACGTGTAACATTTTTTGA
*
458442 ACATGACGTGTAACATTTTTTAA
1 ACATGACGTGTAACATTTTTTGA
*
458465 ATATGACGTGTAACATTTTTTGA
1 ACATGACGTGTAACATTTTTTGA
* *
458488 ACATGGCATGTAACA
1 ACATGACGTGTAACA
458503 ACATGACTGA
Statistics
Matches: 117, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
20 10 0.09
21 15 0.13
22 22 0.19
23 55 0.47
25 15 0.13
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (23 bp):
ACATGACGTGTAACATTTTTTGA
Found at i:466226 original size:21 final size:21
Alignment explanation
Indices: 466200--466245 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
466190 ACAAACTTGG
*
466200 AGATGAAGAATGTTTAAATGA
1 AGATGAAGAAGGTTTAAATGA
*
466221 AGATGAAGAAGGTTTAAATGG
1 AGATGAAGAAGGTTTAAATGA
466242 AGAT
1 AGAT
466246 TATTTTGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (21 bp):
AGATGAAGAAGGTTTAAATGA
Found at i:466477 original size:21 final size:21
Alignment explanation
Indices: 466451--466540 Score: 99
Period size: 21 Copynumber: 4.3 Consensus size: 21
466441 GGCGCATATG
*
466451 AAGTTGTTGGAGCCCCATTTA
1 AAGTTGTTGGAGGCCCATTTA
*
466472 AAGTTGTTGGAGGCCTATTTA
1 AAGTTGTTGGAGGCCCATTTA
* * *
466493 AAGCTGTTGGAGGCCCATCTG
1 AAGTTGTTGGAGGCCCATTTA
* ** *
466514 AAGTTGCTATAGGCCAATTTA
1 AAGTTGTTGGAGGCCCATTTA
466535 AAGTTG
1 AAGTTG
466541 GTGGCTTTTC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (21 bp):
AAGTTGTTGGAGGCCCATTTA
Done.