Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8984705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 112788 characters in sequence are not A, C, G, or T
File 18 of 20
Found at i:7594056 original size:20 final size:19
Alignment explanation
Indices: 7594032--7594068 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7594022 TTTCTTCTCT
7594032 TTTTTTA-AAATTAATTAAA
1 TTTTTTAGAAA-TAATTAAA
7594051 TTTTTTAGAAATAATTAA
1 TTTTTTAGAAATAATTAA
7594069 TCAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TTTTTTAGAAATAATTAAA
Found at i:7596902 original size:3 final size:3
Alignment explanation
Indices: 7596894--7596927 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7596884 GCATTCACGG
* *
7596894 AAT AAT AAT ATT AAT AAT AAT AAC AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7596928 GAAAGAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7600100 original size:2 final size:2
Alignment explanation
Indices: 7600095--7600122 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7600085 GTGAAATTGT
7600095 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7600123 CATTTTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7608711 original size:59 final size:61
Alignment explanation
Indices: 7608617--7608734 Score: 152
Period size: 59 Copynumber: 2.0 Consensus size: 61
7608607 TTCTATTTGA
* *
7608617 CAAGAGCATACATAAAAGAGCTATTTCTGCAACATTATTGTTTTGCTCTGATATCTAGAAG
1 CAAGAGCATACATAAAAGAGCTATTTCTACAACATTATTATTTTGCTCTGATATCTAGAAG
* * * *
7608678 CAAGAGCATACTTACAAA-A-CT-TTTCTACAACATTGTTATTTTGCTTTGATATTTAGA
1 CAAGAGCATACATA-AAAGAGCTATTTCTACAACATTATTATTTTGCTCTGATATCTAGA
7608735 TAATATCTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
59 31 0.62
60 2 0.04
61 14 0.28
62 3 0.06
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (61 bp):
CAAGAGCATACATAAAAGAGCTATTTCTACAACATTATTATTTTGCTCTGATATCTAGAAG
Found at i:7610398 original size:2 final size:2
Alignment explanation
Indices: 7610391--7610417 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7610381 GGGCCTATAT
7610391 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
7610418 CATTCTGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7613929 original size:5 final size:5
Alignment explanation
Indices: 7613921--7613946 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7613911 GGTTAGGTAA
7613921 CTTTC CTTTC CTTTC CTTTC CTTTC C
1 CTTTC CTTTC CTTTC CTTTC CTTTC C
7613947 CTGTATCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (5 bp):
CTTTC
Found at i:7615475 original size:2 final size:2
Alignment explanation
Indices: 7615468--7615496 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7615458 TGCACTTAGT
7615468 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7615497 TGAAAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7619735 original size:10 final size:10
Alignment explanation
Indices: 7619720--7619753 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7619710 ATTTTCTTTT
7619720 AAAAAAATAA
1 AAAAAAATAA
7619730 AAAAAAATAA
1 AAAAAAATAA
*
7619740 AAAACAAAGAA
1 AAAA-AAATAA
7619751 AAA
1 AAA
7619754 GAGTGAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.88, C:0.03, G:0.03, T:0.06
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:7625013 original size:16 final size:16
Alignment explanation
Indices: 7624990--7625025 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7624980 ATAATTGATC
7624990 TTTT-AAATATTAACA
1 TTTTAAAATATTAACA
*
7625005 TTTTAAAATATTAATA
1 TTTTAAAATATTAACA
7625021 TTTTA
1 TTTTA
7625026 TTTTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTAAAATATTAACA
Found at i:7625020 original size:22 final size:22
Alignment explanation
Indices: 7624995--7625064 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
7624985 TGATCTTTTA
7624995 AATATTAACATTTTAAAATATT
1 AATATTAACATTTTAAAATATT
* * *
7625017 AATATTTTA-TTTTTAATATATT
1 AATA-TTAACATTTTAAAATATT
*
7625039 CA-A-TAACATTTTAAAATATT
1 AATATTAACATTTTAAAATATT
7625059 AATATT
1 AATATT
7625065 TTATTTCTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 2 0.06
22 17 0.47
23 3 0.08
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTAACATTTTAAAATATT
Found at i:7625058 original size:42 final size:38
Alignment explanation
Indices: 7624968--7625075 Score: 137
Period size: 42 Copynumber: 2.7 Consensus size: 38
7624958 TTATAATTTA
* *
7624968 TTTAAAATATTAATAATTGATCTTTTAA-ATATTAACAT
1 TTTAAAATATTAATATTTTAT-TTTTAATATATTAACAT
7625006 TTTAAAATATTAATATTTTATTTTTAATATATTCAATAACAT
1 TTTAAAATATTAATATTTTATTTTTAATATA-T---TAACAT
*
7625048 TTTAAAATATTAATATTTTATTTCTAAT
1 TTTAAAATATTAATATTTTATTTTTAAT
7625076 TTAAATATTA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
37 6 0.10
38 22 0.35
39 1 0.02
42 33 0.53
ACGTcount: A:0.43, C:0.05, G:0.01, T:0.52
Consensus pattern (38 bp):
TTTAAAATATTAATATTTTATTTTTAATATATTAACAT
Found at i:7626462 original size:10 final size:10
Alignment explanation
Indices: 7626447--7626481 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7626437 CGATATAGAT
*
7626447 AGAGAGAGAG
1 AGAGAGAGAA
7626457 AGAGAGAGAA
1 AGAGAGAGAA
*
7626467 AGAGAAAGAA
1 AGAGAGAGAA
7626477 AGAGA
1 AGAGA
7626482 TTGAGAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (10 bp):
AGAGAGAGAA
Found at i:7627030 original size:18 final size:15
Alignment explanation
Indices: 7626997--7627046 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
7626987 CTTCTCGCTT
7626997 TCCTCTTCTTCCTCC
1 TCCTCTTCTTCCTCC
* *
7627012 TCCTCTTCTTCATCA
1 TCCTCTTCTTCCTCC
* *
7627027 TCCTCTACTTCTTCC
1 TCCTCTTCTTCCTCC
7627042 TCCTC
1 TCCTC
7627047 CACTTCCTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.06, C:0.48, G:0.00, T:0.46
Consensus pattern (15 bp):
TCCTCTTCTTCCTCC
Found at i:7627051 original size:15 final size:15
Alignment explanation
Indices: 7627001--7627058 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 15
7626991 TCGCTTTCCT
*
7627001 CTTCTTCCTCCTCCT
1 CTTCTTCCTCCTCCA
*
7627016 CTTCTTCATCATCCTCTA
1 CTTCTTC--C-TCCTCCA
7627034 CTTCTTCCTCCTCCA
1 CTTCTTCCTCCTCCA
7627049 CTTCCTTCCT
1 CTT-CTTCCT
7627059 ATCCTCGCGC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
15 16 0.44
16 7 0.19
17 1 0.03
18 12 0.33
ACGTcount: A:0.07, C:0.48, G:0.00, T:0.45
Consensus pattern (15 bp):
CTTCTTCCTCCTCCA
Found at i:7627221 original size:12 final size:10
Alignment explanation
Indices: 7627179--7627217 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
7627169 CAAGCTTAAG
7627179 CTTCTTCTCT
1 CTTCTTCTCT
*
7627189 CTCCTTCTCT
1 CTTCTTCTCT
7627199 CTTCTTCCTCGT
1 CTTCTT-CTC-T
7627211 CTTCTTC
1 CTTCTTC
7627218 CTCGAAGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 4 0.16
12 7 0.28
ACGTcount: A:0.00, C:0.44, G:0.03, T:0.54
Consensus pattern (10 bp):
CTTCTTCTCT
Found at i:7636179 original size:63 final size:64
Alignment explanation
Indices: 7636082--7636218 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 64
7636072 TTAACGATAC
* * * *
7636082 GATTAAGATTATTAACTCCGAAAATAGCATTAAGAAA-AAAGAATTTATATGTACGTAATA-TAA
1 GATTAAGATTACTAACTCCGAAAACAACATTAAGAAACAAA-AATTTATACGTACGTAATAGTAA
* * *
7636145 GATTAAGATTACTAA-TCCTGATAACAACATTAAGAAACAAAAATTTATACGTACTTAATAGTAC
1 GATTAAGATTACTAACTCC-GAAAACAACATTAAGAAACAAAAATTTATACGTACGTAATAGTAA
7636209 GATTAAGATT
1 GATTAAGATT
7636219 GGTAACTCGG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
62 3 0.05
63 46 0.72
64 15 0.23
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (64 bp):
GATTAAGATTACTAACTCCGAAAACAACATTAAGAAACAAAAATTTATACGTACGTAATAGTAA
Found at i:7636242 original size:64 final size:64
Alignment explanation
Indices: 7636044--7636242 Score: 183
Period size: 64 Copynumber: 3.1 Consensus size: 64
7636034 ACCAATAATA
* * * * * * * *
7636044 GCATTAAGCAGCAAGAATTTATACGAATTTAA-CGATACGATTAAGATTATTAACTCCGA-AAAT
1 GCATTAAGAAACAAAAATTTATACGTACTTAATAG-TACGATTAAGATTACTAACTCCGATAACT
* * *
7636107 AGCATTAAGAAA-AAAGAATTTATATGTACGTAATA-TAAGATTAAGATTACTAA-TCCTGATAA
1 -GCATTAAGAAACAAA-AATTTATACGTACTTAATAGTACGATTAAGATTACTAACTCC-GATAA
*
7636169 CA
63 CT
* ** *
7636171 ACATTAAGAAACAAAAATTTATACGTACTTAATAGTACGATTAAGATTGGTAACTCGGATAACT
1 GCATTAAGAAACAAAAATTTATACGTACTTAATAGTACGATTAAGATTACTAACTCCGATAACT
7636235 GCATTAAG
1 GCATTAAG
7636243 GAACCGGCGA
Statistics
Matches: 107, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
62 3 0.03
63 47 0.44
64 55 0.51
65 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (64 bp):
GCATTAAGAAACAAAAATTTATACGTACTTAATAGTACGATTAAGATTACTAACTCCGATAACT
Found at i:7642130 original size:2 final size:2
Alignment explanation
Indices: 7642123--7642164 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
7642113 ACTCGTTTCT
7642123 TA TA TA TA TA T- TA TA TA TA TA TA TA TA T- TA -A TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7642161 TA TA
1 TA TA
7642165 AACCTAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 4 0.11
2 32 0.89
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7642143 original size:15 final size:15
Alignment explanation
Indices: 7642122--7642163 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 15
7642112 AACTCGTTTC
7642122 TTATATATATAT-TA
1 TTATATATATATATA
7642136 -TATATATATATATA
1 TTATATATATATATA
7642150 TTA-ATATA-ATATA
1 TTATATATATATATA
7642163 T
1 T
7642164 AAACCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 17 0.65
14 7 0.27
15 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATATATATATATA
Found at i:7642145 original size:17 final size:16
Alignment explanation
Indices: 7642123--7642164 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
7642113 ACTCGTTTCT
7642123 TATATATATATTATATA
1 TATATATATATTA-ATA
7642140 TATATATATATTAATA
1 TATATATATATTAATA
7642156 TA-ATATATA
1 TATATATATA
7642165 AACCTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.28
16 5 0.20
17 13 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATATATATTAATA
Found at i:7642606 original size:23 final size:23
Alignment explanation
Indices: 7642599--7642658 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
7642589 TAATAATGCT
7642599 TATATATAAATTAAATATATGTA
1 TATATATAAATTAAATATATGTA
* *
7642622 TATATATAATATATTACTATAT-TA
1 TATATATAA-AT-TAAATATATGTA
7642646 TATATAT-AATTAA
1 TATATATAAATTAA
7642659 TGATATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 2 0.06
22 2 0.06
23 10 0.31
24 11 0.34
25 7 0.22
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TATATATAAATTAAATATATGTA
Found at i:7642801 original size:22 final size:22
Alignment explanation
Indices: 7642773--7642822 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7642763 TTTAATCATA
7642773 TAAATAAAG-TCTAT-TATAAAT
1 TAAATAAAGCT-TATCTATAAAT
*
7642794 TATAATAATGCTTATCTATAAAT
1 TA-AATAAAGCTTATCTATAAAT
7642817 TAAATA
1 TAAATA
7642823 TATGTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.08
22 13 0.52
23 10 0.40
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (22 bp):
TAAATAAAGCTTATCTATAAAT
Found at i:7642855 original size:12 final size:14
Alignment explanation
Indices: 7642820--7642871 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 14
7642810 TATAAATTAA
* *
7642820 ATATATGTATATAT
1 ATATATTTATACAT
*
7642834 AATATATTTATGCA-
1 -ATATATTTATACAT
7642848 AT-TATTTATACAT
1 ATATATTTATACAT
7642861 ATATATTTATA
1 ATATATTTATA
7642872 ACATTTTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 9 0.29
13 4 0.13
14 8 0.26
15 10 0.32
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (14 bp):
ATATATTTATACAT
Found at i:7658114 original size:31 final size:32
Alignment explanation
Indices: 7658051--7658114 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
7658041 TTGACTCAAC
**
7658051 ATAAAAATATATAAAGATTTATTTAATTTAAA
1 ATAAAAATATATAAAGATTTATTTAAAATAAA
*
7658083 ATAAAAATGTA-AAAG-TTTCATTTAAAATAAA
1 ATAAAAATATATAAAGATTT-ATTTAAAATAAA
7658114 A
1 A
7658115 ATGTAAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 3 0.11
31 15 0.54
32 10 0.36
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.36
Consensus pattern (32 bp):
ATAAAAATATATAAAGATTTATTTAAAATAAA
Found at i:7658141 original size:27 final size:26
Alignment explanation
Indices: 7658076--7658130 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
7658066 GATTTATTTA
7658076 ATTTAAAATAAAAATGTAAAAGTTTC
1 ATTTAAAATAAAAATGTAAAAGTTTC
7658102 ATTTAAAATAAAAATGTAAAAGTTTC
1 ATTTAAAATAAAAATGTAAAAGTTTC
7658128 ATT
1 ATT
7658131 AAATGCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTTAAAATAAAAATGTAAAAGTTTC
Found at i:7668963 original size:18 final size:18
Alignment explanation
Indices: 7668942--7668976 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7668932 AGGAGGAGGT
*
7668942 GGTGGAGGTGGGTTAGGA
1 GGTGGAGGAGGGTTAGGA
7668960 GGTGGAGGAGGGTTAGG
1 GGTGGAGGAGGGTTAGG
7668977 TGCTGGTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.63, T:0.20
Consensus pattern (18 bp):
GGTGGAGGAGGGTTAGGA
Found at i:7669008 original size:18 final size:18
Alignment explanation
Indices: 7668978--7669031 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
7668968 AGGGTTAGGT
*
7668978 GCTGGTGCAGGTGGTGGA
1 GCTGGTGCTGGTGGTGGA
* * *
7668996 GCTGGAT-TTGGTGGGGGT
1 GCTGG-TGCTGGTGGTGGA
7669014 GCTGGTGCTGGTGGTGGA
1 GCTGGTGCTGGTGGTGGA
7669032 CTAGGTGGAG
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 1 0.04
18 25 0.93
19 1 0.04
ACGTcount: A:0.07, C:0.09, G:0.56, T:0.28
Consensus pattern (18 bp):
GCTGGTGCTGGTGGTGGA
Found at i:7669044 original size:18 final size:18
Alignment explanation
Indices: 7669023--7669066 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7669013 TGCTGGTGCT
*
7669023 GGTGGTGGACTAGGTGGA
1 GGTGGTGGACTAGGCGGA
* *
7669041 GGTGGCGGACTTGGCGGA
1 GGTGGTGGACTAGGCGGA
7669059 GGTGGTGG
1 GGTGGTGG
7669067 TGGAGGGTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.59, T:0.20
Consensus pattern (18 bp):
GGTGGTGGACTAGGCGGA
Found at i:7669079 original size:21 final size:21
Alignment explanation
Indices: 7669055--7669144 Score: 66
Period size: 21 Copynumber: 4.4 Consensus size: 21
7669045 GCGGACTTGG
7669055 CGGAGGTGGTGGTGGAGGGTT
1 CGGAGGTGGTGGTGGAGGGTT
*
7669076 CGGAGGTGGCGGTGGA-----
1 CGGAGGTGGTGGTGGAGGGTT
* * *
7669092 C-TAGGTGGTGGTGGTGGATT
1 CGGAGGTGGTGGTGGAGGGTT
*
7669112 TGGAGGTGGAGCTGGTGGAGGGTT
1 CGGAGGT-G-G-TGGTGGAGGGTT
7669136 CGGAGGTGG
1 CGGAGGTGG
7669145 AGCTGGAGCA
Statistics
Matches: 51, Mismatches: 9, Indels: 17
0.66 0.12 0.22
Matches are distributed among these distances:
15 11 0.22
16 1 0.02
21 19 0.37
22 2 0.04
23 2 0.04
24 16 0.31
ACGTcount: A:0.11, C:0.07, G:0.59, T:0.23
Consensus pattern (21 bp):
CGGAGGTGGTGGTGGAGGGTT
Found at i:7669127 original size:24 final size:24
Alignment explanation
Indices: 7669100--7669150 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7669090 GACTAGGTGG
* *
7669100 TGGTGGTGGATTTGGAGGTGGAGC
1 TGGTGGAGGATTCGGAGGTGGAGC
*
7669124 TGGTGGAGGGTTCGGAGGTGGAGC
1 TGGTGGAGGATTCGGAGGTGGAGC
7669148 TGG
1 TGG
7669151 AGCAGGAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.06, G:0.57, T:0.25
Consensus pattern (24 bp):
TGGTGGAGGATTCGGAGGTGGAGC
Found at i:7669128 original size:60 final size:60
Alignment explanation
Indices: 7669026--7669144 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
7669016 TGGTGCTGGT
* * *
7669026 GGTGGACTAGGTGGAGGTGGCGGACTTGGCGGAGGTGGTGGTGGAGGGTTCGGAGGTGGC
1 GGTGGACTAGGTGGAGGTGGCGGACTTGGAGGAGGAGCTGGTGGAGGGTTCGGAGGTGGC
* * * *
7669086 GGTGGACTAGGTGGTGGTGGTGGATTTGGAGGTGGAGCTGGTGGAGGGTTCGGAGGTGG
1 GGTGGACTAGGTGGAGGTGGCGGACTTGGAGGAGGAGCTGGTGGAGGGTTCGGAGGTGG
7669145 AGCTGGAGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.12, C:0.08, G:0.58, T:0.23
Consensus pattern (60 bp):
GGTGGACTAGGTGGAGGTGGCGGACTTGGAGGAGGAGCTGGTGGAGGGTTCGGAGGTGGC
Found at i:7669146 original size:30 final size:30
Alignment explanation
Indices: 7669064--7669153 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
7669054 GCGGAGGTGG
*
7669064 TGGTGGAGGGTTCGGAGGTGGCGGTGGA-C
1 TGGTGGAGGGTTCGGAGGTGGAGGTGGAGC
* * **
7669093 TAGGTGGTGGTGGT-GGATTTGGAGGTGGAGC
1 T-GGTGGAGG-GTTCGGAGGTGGAGGTGGAGC
*
7669124 TGGTGGAGGGTTCGGAGGTGGAGCTGGAGC
1 TGGTGGAGGGTTCGGAGGTGGAGGTGGAGC
7669154 AGGAGGTGGA
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
29 3 0.06
30 40 0.85
31 4 0.09
ACGTcount: A:0.12, C:0.08, G:0.57, T:0.23
Consensus pattern (30 bp):
TGGTGGAGGGTTCGGAGGTGGAGGTGGAGC
Found at i:7669179 original size:18 final size:18
Alignment explanation
Indices: 7669158--7669228 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
7669148 TGGAGCAGGA
*
7669158 GGTGGACTAGGTGGTGGT
1 GGTGGACTTGGTGGTGGT
* *
7669176 GGTGGAGC-TGGAGGTGGA
1 GGTGGA-CTTGGTGGTGGT
* ** *
7669194 GGCGGTTTTGGCGGTGGT
1 GGTGGACTTGGTGGTGGT
7669212 GGTGGACTTGGTGGTGG
1 GGTGGACTTGGTGGTGG
7669229 AGCTGGCGCT
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
18 38 0.97
19 1 0.03
ACGTcount: A:0.08, C:0.07, G:0.58, T:0.27
Consensus pattern (18 bp):
GGTGGACTTGGTGGTGGT
Found at i:7669180 original size:60 final size:58
Alignment explanation
Indices: 7669064--7669186 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 58
7669054 GCGGAGGTGG
* * *
7669064 TGGTGGAGGGTTCGGAGGTGGCGGTGGACTAGGTGGTGGTGGTGGATTTGGAGGTGGAGC
1 TGGTGGAGGGTTCGGAGGTGGAGCTGGACTAGGAGGTGGTGGTGG--TTGGAGGTGGAGC
*
7669124 TGGTGGAGGGTTCGGAGGTGGAGCTGGAGC-AGGAGGTGGACTAGGTGG-TGGTGGTGGAGC
1 TGGTGGAGGGTTCGGAGGTGGAGCTGGA-CTAGGAGGTGG--T-GGTGGTTGGAGGTGGAGC
7669184 TGG
1 TGG
7669187 AGGTGGAGGC
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
60 48 0.87
61 1 0.02
62 1 0.02
63 5 0.09
ACGTcount: A:0.13, C:0.07, G:0.57, T:0.23
Consensus pattern (58 bp):
TGGTGGAGGGTTCGGAGGTGGAGCTGGACTAGGAGGTGGTGGTGGTTGGAGGTGGAGC
Found at i:7669195 original size:36 final size:36
Alignment explanation
Indices: 7669058--7669230 Score: 127
Period size: 36 Copynumber: 4.8 Consensus size: 36
7669048 GACTTGGCGG
* * *
7669058 AGGTGGTGGTGGAGG-GTTCGGAGGTGGCGGTGGACT
1 AGGTGGTGGTGGTGGAGCT-GGAGGTGGAGGTGGACT
** * ***
7669094 AGGTGGTGGTGGTGGATTTGGAGGTGGAGCTGGTGG
1 AGGTGGTGGTGGTGGAGCTGGAGGTGGAGGTGGACT
* * **
7669130 AGG-GTTCGGAGGTGGAGCTGGAGCAGGAGGTGGACT
1 AGGTGGT-GGTGGTGGAGCTGGAGGTGGAGGTGGACT
* **
7669166 AGGTGGTGGTGGTGGAGCTGGAGGTGGAGGCGGTTT
1 AGGTGGTGGTGGTGGAGCTGGAGGTGGAGGTGGACT
* * *
7669202 TGGCGGTGGTGGTGGA-CTTGGTGGTGGAG
1 AGGTGGTGGTGGTGGAGC-TGGAGGTGGAG
7669231 CTGGCGCTGG
Statistics
Matches: 106, Mismatches: 27, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
35 3 0.03
36 99 0.93
37 4 0.04
ACGTcount: A:0.12, C:0.07, G:0.57, T:0.24
Consensus pattern (36 bp):
AGGTGGTGGTGGTGGAGCTGGAGGTGGAGGTGGACT
Found at i:7669236 original size:30 final size:30
Alignment explanation
Indices: 7669202--7669282 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 30
7669192 GAGGCGGTTT
* * *
7669202 TGGCGGTGGTGGTGGACTTGGTGGTGGAGC
1 TGGCGCTGGTGGTGGACTTGGCGGCGGAGC
* **
7669232 TGGCGCTGGAGGTGGGTTTGGCGGCGGAGC
1 TGGCGCTGGTGGTGGACTTGGCGGCGGAGC
* * *
7669262 TGGTGCAGGTGGTGGCCTTGG
1 TGGCGCTGGTGGTGGACTTGG
7669283 AGGATTCCCA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.06, C:0.14, G:0.56, T:0.25
Consensus pattern (30 bp):
TGGCGCTGGTGGTGGACTTGGCGGCGGAGC
Found at i:7669933 original size:21 final size:22
Alignment explanation
Indices: 7669894--7669934 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7669884 TTTTTATATA
* *
7669894 TTTTTATATTTATATTATAATT
1 TTTTTAAATTTATAATATAATT
7669916 TTTTTAAATTTA-AATATAA
1 TTTTTAAATTTATAATATAA
7669935 AAATTCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTTAAATTTATAATATAATT
Found at i:7670551 original size:51 final size:53
Alignment explanation
Indices: 7670472--7670574 Score: 156
Period size: 52 Copynumber: 2.0 Consensus size: 53
7670462 AGTCAAACAC
* *
7670472 GTATTAATATGACAATTATGATGGTCCCTAA-TTGCTTATTAGGACCATAATA
1 GTATTAATATGACAACTATGATGATCCCTAATTTGCTTATTAGGACCATAATA
* *
7670524 GTATTAA-ATGACAACTATGATGATCCCTAATTTGCTTATTAGTACCTTAAT
1 GTATTAATATGACAACTATGATGATCCCTAATTTGCTTATTAGGACCATAAT
7670575 CTAATTAAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 21 0.46
52 25 0.54
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (53 bp):
GTATTAATATGACAACTATGATGATCCCTAATTTGCTTATTAGGACCATAATA
Found at i:7692297 original size:218 final size:218
Alignment explanation
Indices: 7691855--7692524 Score: 893
Period size: 218 Copynumber: 3.1 Consensus size: 218
7691845 AAGTCAACTT
* * *
7691855 GTTAACCTTCACTTACAATTCAAATTTCCAGGAAATTTCACTTTTATTAGATCCCAAAACACTAA
1 GTTAACCTTCACTTAAAATTCAAATTTCCAGGAAATTTCACTTTTCTCAGATCCCAAAACACTAA
** * * * *
7691920 AAAT-TTAGTAATATCTCACTCAA-TGAGCAGAAAACACTAAAAACAATTACTAGAAACTTAAAA
66 AAATCCCA-CAATATCTCACTCAACCGAACAGAAAACACTAGAAACAATTACTAGAAACTTAAAA
* * * * * *
7691983 GGAATCATCACAAC-TCCAAAATCGCATAATCCAGTCAATTAAATTAAACAAATAGAAGTTCCAA
130 GGGATAATCACAACTTCAAAAATCGCATAATCAACTCAACTAAATTAAACAAATAGAAGTTCCAA
7692047 AGCACTCTTAATCAAAGTTAAACA
195 AGCACTCTTAATCAAAGTTAAACA
* ** *
7692071 GTTAACCTTCATTTAAAATTCAAATCCCCAGGAAATTTCACCTTTCTCAGATCCCAAAACACTAA
1 GTTAACCTTCACTTAAAATTCAAATTTCCAGGAAATTTCACTTTTCTCAGATCCCAAAACACTAA
* * *
7692136 AAATCCGACAACATCTCACTCAACCGAACAGAAAACACTAGAAACAATTACTAGGAACTTAAAAG
66 AAATCCCACAATATCTCACTCAACCGAACAGAAAACACTAGAAACAATTACTAGAAACTTAAAAG
** * *
7692201 GGATAATCACAACTTCAAAAATCGCATGGTCAACTCAACTAAATTAAACAAATCGAAGTTTCAAA
131 GGATAATCACAACTTCAAAAATCGCATAATCAACTCAACTAAATTAAACAAATAGAAGTTCCAAA
7692266 GCACTCTTAATCAAAGTTAAACA
196 GCACTCTTAATCAAAGTTAAACA
* *
7692289 GTTAACCTTCACTTAAAATTCAAATTTCCAGGACATTTCACTTTTCACAGATCCCAAAACACTAA
1 GTTAACCTTCACTTAAAATTCAAATTTCCAGGAAATTTCACTTTTCTCAGATCCCAAAACACTAA
* *
7692354 AAATCCCACAATATCTGACTCAACCAAACAGAAAACACT-GAAAACAATTACTAGAAACTTAAAA
66 AAATCCCACAATATCTCACTCAACCGAACAGAAAACACTAG-AAACAATTACTAGAAACTTAAAA
* * * * *
7692418 GAGATAATCACAGCTTCGAAAATCGCATAATCAACTC-ACTTATAAATCAAACAAATTGAAGTTC
130 GGGATAATCACAACTTCAAAAATCGCATAATCAACTCAAC---TAAATTAAACAAATAGAAGTTC
* * * *
7692482 CAAAACACTCTTTATCAAACTCAAACA
192 CAAAGCACTCTTAATCAAAGTTAAACA
7692509 GTT-ACTCTTCACTTAA
1 GTTAAC-CTTCACTTAA
7692525 CTAAAAACAG
Statistics
Matches: 398, Mismatches: 48, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
216 75 0.19
217 52 0.13
218 214 0.54
219 2 0.01
220 55 0.14
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.25
Consensus pattern (218 bp):
GTTAACCTTCACTTAAAATTCAAATTTCCAGGAAATTTCACTTTTCTCAGATCCCAAAACACTAA
AAATCCCACAATATCTCACTCAACCGAACAGAAAACACTAGAAACAATTACTAGAAACTTAAAAG
GGATAATCACAACTTCAAAAATCGCATAATCAACTCAACTAAATTAAACAAATAGAAGTTCCAAA
GCACTCTTAATCAAAGTTAAACA
Found at i:7698648 original size:178 final size:181
Alignment explanation
Indices: 7698341--7698691 Score: 439
Period size: 178 Copynumber: 2.0 Consensus size: 181
7698331 AACTCAAATT
* * *
7698341 AATAAAAAAAGAGAGAAAAAAGGTATGCTTTTAGTATAGGTTCTTTAAATCTTTGAATTTTTTTT
1 AATAAAAAAAGAGAGAAAAAAGGTATGCCTTTAGTATAGGTTCCTTAAATCTTTGAATTTTTCTT
* * ** *
7698406 GAAGAGAAGATTTATTATTTTGTATAAAAAAGGAGAAAATATTTATTATGGGGCCGACAAAATAA
66 GAAGAGAAGATTTAATATTTTGGATAAAAAAGGAGAAAATATTTATTACAGGACCGACAAAATAA
* *
7698471 ACTCTATTTAGAC-ACTAAGTATTATTCATAAAGCTCAAATTAATAAAATAA
131 ACACTATTTAGACTA-TAAGTATTATTCATAAAACTCAAATTAATAAAATAA
*
7698522 AATAAAAAACA-AGA-AAAAAAGG-ATGCCTTTAGTATA-GTTCCTTAAAGTCTTTTAA-TTTTC
1 AATAAAAAA-AGAGAGAAAAAAGGTATGCCTTTAGTATAGGTTCCTTAAA-TCTTTGAATTTTTC
* * * *
7698582 TTGAA-ATGAAGATTTAATATTTTGGATAATAGAGTAGAAAATATTTATTGCAGGACCGGA-AAA
64 TTGAAGA-GAAGATTTAATATTTTGGATAAAAAAGGAGAAAATATTTATTACAGGACC-GACAAA
* **
7698645 ATAAACACTATTTCGACTATGGGTATTATTCATAAAACTCAAATTAA
127 ATAAACACTATTTAGACTATAAGTATTATTCATAAAACTCAAATTAA
7698692 CAAAGAAACA
Statistics
Matches: 147, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
177 1 0.01
178 102 0.69
179 23 0.16
180 8 0.05
181 12 0.08
182 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.34
Consensus pattern (181 bp):
AATAAAAAAAGAGAGAAAAAAGGTATGCCTTTAGTATAGGTTCCTTAAATCTTTGAATTTTTCTT
GAAGAGAAGATTTAATATTTTGGATAAAAAAGGAGAAAATATTTATTACAGGACCGACAAAATAA
ACACTATTTAGACTATAAGTATTATTCATAAAACTCAAATTAATAAAATAA
Found at i:7705169 original size:16 final size:17
Alignment explanation
Indices: 7705148--7705184 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
7705138 TTAACCTTAT
*
7705148 AAAAAAA-AAAGGA-AA
1 AAAAAAACAAAAGACAA
7705163 AAAAAAACAAAAGACAA
1 AAAAAAACAAAAGACAA
7705180 AAAAA
1 AAAAA
7705185 TAGTGGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 7 0.37
ACGTcount: A:0.86, C:0.05, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAAGACAA
Found at i:7708297 original size:30 final size:30
Alignment explanation
Indices: 7708263--7708332 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
7708253 TTAAAATTAT
7708263 TTGATTAATTCAAAAATGAATACAATTAAA
1 TTGATTAATTCAAAAATGAATACAATTAAA
7708293 TTGATTAATTCAAAAATGAATACAATTAAA
1 TTGATTAATTCAAAAATGAATACAATTAAA
7708323 TTGATTAATT
1 TTGATTAATT
7708333 TAAATGGTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.37
Consensus pattern (30 bp):
TTGATTAATTCAAAAATGAATACAATTAAA
Found at i:7709896 original size:32 final size:32
Alignment explanation
Indices: 7709860--7709985 Score: 153
Period size: 32 Copynumber: 3.9 Consensus size: 32
7709850 CTTGATCAGA
* * * * *
7709860 TTGATTGGCAAATTGGATTCTACTATGAAACT
1 TTGATTGGGAAAATGGATTCAACTATCAATCT
* *
7709892 TTGATTGGGAAAATGGACTCAATTATCAATCT
1 TTGATTGGGAAAATGGATTCAACTATCAATCT
*
7709924 TTGATTGGGAAAAAGGATTCAACTATCAATCT
1 TTGATTGGGAAAATGGATTCAACTATCAATCT
*
7709956 TGGATTGGGAAAATGGATTTCAAACTATCA
1 TTGATTGGGAAAATGGA-TTC-AACTATCA
7709986 TAGCCATGAG
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
32 69 0.86
33 3 0.04
34 8 0.10
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (32 bp):
TTGATTGGGAAAATGGATTCAACTATCAATCT
Found at i:7710431 original size:198 final size:192
Alignment explanation
Indices: 7709924--7710431 Score: 684
Period size: 194 Copynumber: 2.6 Consensus size: 192
7709914 TTATCAATCT
*
7709924 TTGATTGGGAAAAAGGATTCAACTATCAATCTTGGATTGGGAAAATGGATTTCAAACTATCATAG
1 TTGATTGGGAAAATGGATTCAACTATCAATCTTGGATTGGGAAAATGGATTTCAAACTATCATAG
* * * *
7709989 CCATGAGTTTCCAAGTAGTCCCTTGTAAAATCAAAGTGTGAACAAGTG-AATTTCCCAAATTTGT
66 CCATGAATTTGC-ATTAGTCCCTTGT-AAATGAAAGTGTGAACAAGTGAAATTTCCCAAATTTGT
7710053 GGCAATAGAATGAACATTGGCAGAGAAGGAAAGACAAAAAAAAACCCATAATTTTCTTAATCAGA
129 GGCAATAGAATGAACATTGGCAGAGAAGGAAAGAC-AAAAAAAACCCATAATTTTCTTAATCAGA
*
7710118 TTGATTGGGAAATTGGATTCAACTATCAATCTTGGATTGGGAAAATGGATTTCAAACTATCATAG
1 TTGATTGGGAAAATGGATTCAACTATCAATCTTGGATTGGGAAAATGGATTTCAAACTATCATAG
* * *
7710183 CCATGACTTTGCAGTCAGTCCCTTGTAAACTGAAAGTGTGAACTAGTGAAATTTCATATGCCAGA
66 CCATGAATTTGCA-TTAGTCCCTTGTAAA-TGAAAGTGTGAACAAGTGAAATTTC-----CCA-A
* * * * *
7710248 CTTTGTGGCAATAGGATGAACATTGGCAGAGAAGGAAAGAC-AAAAAATCCCATAGGTTTTCTTG
123 ATTTGTGGCAATAGAATGAACATTGGCAGAGAAGGAAAGACAAAAAAAACCCATA-ATTTTCTTA
7710312 ATCAGA
187 ATCAGA
*
7710318 TTGATT-GGAAAATGGATTCAACTATCAATCATT-GATTGGGAAAATGGA-TTCAAACTATAATA
1 TTGATTGGGAAAATGGATTCAACTATCAATC-TTGGATTGGGAAAATGGATTTCAAACTATCATA
** *
7710380 GCCATGAATTTGCTATTAGTCCCTTGTGAAATGAGTGTGTGAACCAGTGAAA
65 GCCATGAATTTGC-ATTAGTCCCTTGT-AAATGAAAGTGTGAACAAGTGAAA
7710432 ATTTTCATCT
Statistics
Matches: 281, Mismatches: 20, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
193 4 0.01
194 99 0.35
195 6 0.02
198 54 0.19
199 54 0.19
200 24 0.09
201 40 0.14
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (192 bp):
TTGATTGGGAAAATGGATTCAACTATCAATCTTGGATTGGGAAAATGGATTTCAAACTATCATAG
CCATGAATTTGCATTAGTCCCTTGTAAATGAAAGTGTGAACAAGTGAAATTTCCCAAATTTGTGG
CAATAGAATGAACATTGGCAGAGAAGGAAAGACAAAAAAAACCCATAATTTTCTTAATCAGA
Found at i:7733866 original size:18 final size:18
Alignment explanation
Indices: 7733845--7733881 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7733835 AATATCTACT
7733845 CTCATTCTAATACATAAA
1 CTCATTCTAATACATAAA
*
7733863 CTCATTCTAATATATAAA
1 CTCATTCTAATACATAAA
7733881 C
1 C
7733882 GATGTAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (18 bp):
CTCATTCTAATACATAAA
Found at i:7736653 original size:21 final size:23
Alignment explanation
Indices: 7736618--7736662 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
7736608 AAAATTAAAA
*
7736618 ATTTTTATAATATAAATATTATT
1 ATTTTTATAATATAAATATAATT
*
7736641 ATTTTT-T-ATATAATTATAATT
1 ATTTTTATAATATAAATATAATT
7736662 A
1 A
7736663 AACAATCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTTTTATAATATAAATATAATT
Found at i:7738194 original size:4 final size:4
Alignment explanation
Indices: 7738162--7738213 Score: 70
Period size: 4 Copynumber: 13.2 Consensus size: 4
7738152 AACTAAAGAT
* * *
7738162 TATG TATT TATG TAT- TATG CATT TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7738209 TATG T
1 TATG T
7738214 GAGATTTGTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.25, C:0.02, G:0.19, T:0.54
Consensus pattern (4 bp):
TATG
Found at i:7741376 original size:3 final size:3
Alignment explanation
Indices: 7741370--7741418 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
7741360 TTACATGTTG
*
7741370 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7741418 T
1 T
7741419 CTTTTTAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7777958 original size:23 final size:22
Alignment explanation
Indices: 7777930--7778005 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 22
7777920 ATAATAAATA
7777930 ATAATATGATATATTTATATAAT
1 ATAATAT-ATATATTTATATAAT
*
7777953 ATAATA-ATATAATTTTATATATT
1 ATAATATATAT-A-TTTATATAAT
* * *
7777976 AAAATAT-TATATTAATATTAT
1 ATAATATATATATTTATATAAT
7777997 ATAA-ATATA
1 ATAATATATA
7778006 AAATAATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
20 2 0.05
21 16 0.37
22 2 0.05
23 23 0.53
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (22 bp):
ATAATATATATATTTATATAAT
Found at i:7777959 original size:8 final size:8
Alignment explanation
Indices: 7777915--7777965 Score: 50
Period size: 8 Copynumber: 6.2 Consensus size: 8
7777905 AATTGTTAAC
*
7777915 ATAAAATA
1 ATAATATA
7777923 ATAA-ATA
1 ATAATATA
*
7777930 ATAATATG
1 ATAATATA
*
7777938 ATATATTTA
1 ATA-ATATA
7777947 TATAATATA
1 -ATAATATA
7777956 ATAATATA
1 ATAATATA
7777964 AT
1 AT
7777966 TTTATATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 7 0.19
8 19 0.53
9 7 0.19
10 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:7777962 original size:13 final size:13
Alignment explanation
Indices: 7777923--7777965 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
7777913 ACATAAAATA
7777923 ATAA-ATAATAAT
1 ATAATATAATAAT
* * *
7777935 ATGATATATTTAT
1 ATAATATAATAAT
7777948 ATAATATAATAAT
1 ATAATATAATAAT
7777961 ATAAT
1 ATAAT
7777966 TTTATATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 3 0.12
13 21 0.88
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (13 bp):
ATAATATAATAAT
Found at i:7777973 original size:31 final size:31
Alignment explanation
Indices: 7777916--7778013 Score: 89
Period size: 31 Copynumber: 3.3 Consensus size: 31
7777906 ATTGTTAACA
7777916 TAAAATAATA-AAT-A-ATAATATGATATAT
1 TAAAATAATATAATAATATAATATGATATAT
* * * *
7777944 TTATATAATATAATAATATAATTTTATATAT
1 TAAAATAATATAATAATATAATATGATATAT
* * * *
7777975 TAAAATATTATATTAATATTATAT-AAATA-
1 TAAAATAATATAATAATATAATATGATATAT
7778004 TAAAATAATA
1 TAAAATAATA
7778014 AATTACAATT
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
28 8 0.15
29 12 0.22
30 5 0.09
31 30 0.55
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (31 bp):
TAAAATAATATAATAATATAATATGATATAT
Found at i:7785525 original size:109 final size:105
Alignment explanation
Indices: 7785336--7785551 Score: 315
Period size: 109 Copynumber: 2.0 Consensus size: 105
7785326 TAGGCACAAA
* * *
7785336 GGGCAACTGCTGGCTCATCATCATCTTCCTCACCCTTGCGACCGGATGCAGGTTTAGGGTATGGA
1 GGGCAACTGCTGGCTCATCATCATCTTCCTCACCCATGCAACCAGATGCAGGTTTAGGGTATGGA
* * *
7785401 TATGCAGACAGGGACAACATCCAACCAAGAGCTCGAACGT
66 CATGCAGAAAGGGACAACATCCAACCAAGACCTCGAACGT
* *
7785441 GGGCAACTGCTGGCTCATCATCATCTTCCTCGCCATCATGACCAACTAGATGCAGGTTTAGGGTA
1 GGGCAACTGCTGGCTCATCATCATCTTCCTCACC--CATG--CAACCAGATGCAGGTTTAGGGTA
*
7785506 TGGACATGCAGAAAGGGACAACATCCAACTAAGACCTCGAACGT
62 TGGACATGCAGAAAGGGACAACATCCAACCAAGACCTCGAACGT
7785550 GG
1 GG
7785552 TGCTGTAGGA
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
105 33 0.34
107 3 0.03
109 62 0.63
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (105 bp):
GGGCAACTGCTGGCTCATCATCATCTTCCTCACCCATGCAACCAGATGCAGGTTTAGGGTATGGA
CATGCAGAAAGGGACAACATCCAACCAAGACCTCGAACGT
Found at i:7786042 original size:24 final size:25
Alignment explanation
Indices: 7785996--7786050 Score: 94
Period size: 24 Copynumber: 2.2 Consensus size: 25
7785986 AAATATACAA
7785996 AAATAAATTAGCAAAAGAAGGTGAG
1 AAATAAATTAGCAAAAGAAGGTGAG
*
7786021 AAATAAATTAG-AAAAGAGGGTGAG
1 AAATAAATTAGCAAAAGAAGGTGAG
7786045 AAATAA
1 AAATAA
7786051 TGATCAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.24, T:0.16
Consensus pattern (25 bp):
AAATAAATTAGCAAAAGAAGGTGAG
Found at i:7792564 original size:20 final size:19
Alignment explanation
Indices: 7792539--7792582 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
7792529 CTTAATTAGT
* *
7792539 CATAATCAATCAAAACTTTA
1 CATAATCAAGCAAAA-TTAA
*
7792559 CATAATTAAGCAAAATTAA
1 CATAATCAAGCAAAATTAA
7792578 CATAA
1 CATAA
7792583 AAATCTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.55, C:0.16, G:0.02, T:0.27
Consensus pattern (19 bp):
CATAATCAAGCAAAATTAA
Found at i:7799563 original size:4 final size:4
Alignment explanation
Indices: 7799556--7799602 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
7799546 AAGAAAACAT
* * * *
7799556 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
7799603 GATATATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:7803218 original size:9 final size:9
Alignment explanation
Indices: 7803201--7803267 Score: 62
Period size: 9 Copynumber: 7.1 Consensus size: 9
7803191 CCCTCCTTAT
7803201 CCACCTCAC
1 CCACCTCAC
*
7803210 CCGCCTCAC
1 CCACCTCAC
*
7803219 CCACCTCAT
1 CCACCTCAC
7803228 CCACCTCACCC
1 CCACCTCA--C
*
7803239 TCCTCCTCAC
1 -CCACCTCAC
* *
7803249 CCGCCTCAT
1 CCACCTCAC
7803258 CCACCTCAC
1 CCACCTCAC
7803267 C
1 C
7803268 TTCCTTGTCC
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
9 38 0.83
10 1 0.02
12 7 0.15
ACGTcount: A:0.16, C:0.64, G:0.03, T:0.16
Consensus pattern (9 bp):
CCACCTCAC
Found at i:7803222 original size:18 final size:18
Alignment explanation
Indices: 7803201--7803267 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
7803191 CCCTCCTTAT
7803201 CCACCTCACCCGCCTCAC
1 CCACCTCACCCGCCTCAC
* *
7803219 CCACCTCATCCACCTCACCC
1 CCACCTCACCCGCCTCA--C
* *
7803239 TCCTCCTCACCCGCCTCAT
1 -CCACCTCACCCGCCTCAC
7803258 CCACCTCACC
1 CCACCTCACC
7803268 TTCCTTGTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
18 24 0.62
20 1 0.03
21 14 0.36
ACGTcount: A:0.16, C:0.64, G:0.03, T:0.16
Consensus pattern (18 bp):
CCACCTCACCCGCCTCAC
Found at i:7803249 original size:30 final size:30
Alignment explanation
Indices: 7803213--7803272 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
7803203 ACCTCACCCG
7803213 CCTCACCCACCTCATCCACCTCACCCTCCT
1 CCTCACCCACCTCATCCACCTCACCCTCCT
* *
7803243 CCTCACCCGCCTCATCCACCTCACCTTCCT
1 CCTCACCCACCTCATCCACCTCACCCTCCT
7803273 TGTCCTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.62, G:0.02, T:0.22
Consensus pattern (30 bp):
CCTCACCCACCTCATCCACCTCACCCTCCT
Found at i:7803664 original size:2 final size:2
Alignment explanation
Indices: 7803657--7803687 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7803647 CAGGTAATAC
*
7803657 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7803688 AAAACTTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7806523 original size:17 final size:19
Alignment explanation
Indices: 7806501--7806541 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
7806491 TACTTGCAAG
7806501 TTGCATATATCTC-TTT-A
1 TTGCATATATCTCATTTCA
*
7806518 TTGCATTTATCTCATTTCA
1 TTGCATATATCTCATTTCA
7806537 TTGCA
1 TTGCA
7806542 CTTATCTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 3 0.14
19 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.07, T:0.51
Consensus pattern (19 bp):
TTGCATATATCTCATTTCA
Found at i:7806541 original size:19 final size:17
Alignment explanation
Indices: 7806501--7806549 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 17
7806491 TACTTGCAAG
*
7806501 TTGCATATATCTCTTTA
1 TTGCATTTATCTCTTTA
7806518 TTGCATTTATCTCATTTCA
1 TTGCATTTATCTC-TTT-A
*
7806537 TTGCACTTATCTC
1 TTGCATTTATCTC
7806550 CTAGGCCTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.43
18 3 0.11
19 13 0.46
ACGTcount: A:0.20, C:0.22, G:0.06, T:0.51
Consensus pattern (17 bp):
TTGCATTTATCTCTTTA
Found at i:7812861 original size:29 final size:28
Alignment explanation
Indices: 7812819--7812905 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
7812809 TTAAGAAAAT
* *
7812819 TCAAATAAGTTTTTATTTTTTTATTT-AG
1 TCAAATAA-ATTTTATATTTTTATTTCAG
*
7812847 TTCAATTAAACTTTTATATTTTTATTTTCAG
1 -TCAAATAAA-TTTTATATTTTTA-TTTCAG
7812878 TCAAATAAATCTTTATATTTTTATTTCA
1 TCAAATAAAT-TTTATATTTTTATTTCA
7812906 AATTAAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
29 25 0.50
30 23 0.46
31 2 0.04
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.57
Consensus pattern (28 bp):
TCAAATAAATTTTATATTTTTATTTCAG
Found at i:7812893 original size:30 final size:30
Alignment explanation
Indices: 7812818--7812903 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
7812808 TTTAAGAAAA
* * *
7812818 TTCAAATAAGTTTTTATTTTTTTA-TTTAG
1 TTCAAATAAATCTTTATATTTTTATTTTAG
*
7812847 TTCAATTAAA-CTTTTATATTTTTATTTTCAG
1 TTCAAATAAATC-TTTATATTTTTATTTT-AG
7812878 -TCAAATAAATCTTTATATTTTTATTT
1 TTCAAATAAATCTTTATATTTTTATTT
7812904 CAAATTAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
29 19 0.40
30 26 0.54
31 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.59
Consensus pattern (30 bp):
TTCAAATAAATCTTTATATTTTTATTTTAG
Found at i:7814568 original size:23 final size:23
Alignment explanation
Indices: 7814541--7814584 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7814531 TCGGAGATTT
*
7814541 ATTAATATTTAAA-AATTAATACA
1 ATTAA-ATTTAAATAATAAATACA
7814564 ATTAAATTTAAATAATAAATA
1 ATTAAATTTAAATAATAAATA
7814585 TCTTAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
ATTAAATTTAAATAATAAATACA
Found at i:7816006 original size:16 final size:16
Alignment explanation
Indices: 7815985--7816036 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7815975 TTTCATTTGA
7815985 ATTAAAAAATTAAAAG
1 ATTAAAAAATTAAAAG
*
7816001 ATTAAAAATAATAAAAG
1 ATTAAAAA-ATTAAAAG
* *
7816018 A--AAAAAATAAAAAT
1 ATTAAAAAATTAAAAG
7816032 ATTAA
1 ATTAA
7816037 TCAAATGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 6 0.21
15 5 0.17
16 10 0.34
17 8 0.28
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (16 bp):
ATTAAAAAATTAAAAG
Found at i:7816130 original size:116 final size:116
Alignment explanation
Indices: 7815968--7816189 Score: 349
Period size: 117 Copynumber: 1.9 Consensus size: 116
7815958 AAAGGTGCTT
* * *
7815968 AAATCTTTTTCATTTGAATTAAAAAATTAAAAGATTAAAAATAATAAAAG-AAAAAAATAAAAAT
1 AAATATTTTTAATTTGAATTAAAAAATTAAAAGATTAAAAATAATAAAAGTAAAAAAATAAAAAA
7816032 ATTAATCAAATGGATTATAATTTTATCAATTTAAATTTATCATATTTAATTCA
66 ATTAATC--ATGGATTATAATTTTATCAATTTAAATTTATCATATTTAATTCA
* **
7816085 AAATATTTTTAATTTGAATT-AAAAATTAAAAGATTTAAAATAATAAAAGTTTAAAAATAAAAAA
1 AAATATTTTTAATTTGAATTAAAAAATTAAAAGATTAAAAATAATAAAAGTAAAAAAATAAAAAA
*
7816149 ATTAATCATGGATTATCATTTTATCAATTTAAATTTATCAT
66 ATTAATCATGGATTATAATTTTATCAATTTAAATTTATCAT
7816190 CCTTTATTCA
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
115 33 0.34
116 28 0.29
117 36 0.37
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (116 bp):
AAATATTTTTAATTTGAATTAAAAAATTAAAAGATTAAAAATAATAAAAGTAAAAAAATAAAAAA
ATTAATCATGGATTATAATTTTATCAATTTAAATTTATCATATTTAATTCA
Found at i:7816141 original size:17 final size:18
Alignment explanation
Indices: 7816103--7816148 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
7816093 TTAATTTGAA
7816103 TTAAAAAT--TAAAAGAT
1 TTAAAAATAATAAAAGAT
7816119 TT-AAAATAATAAAAG-T
1 TTAAAAATAATAAAAGAT
7816135 TTAAAAATAA-AAAA
1 TTAAAAATAATAAAA
7816149 ATTAATCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 5 0.19
16 9 0.33
17 13 0.48
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (18 bp):
TTAAAAATAATAAAAGAT
Found at i:7816149 original size:17 final size:16
Alignment explanation
Indices: 7816103--7816151 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
7816093 TTAATTTGAA
* *
7816103 TTAAAAATTAAAAGAT
1 TTAAAAATAAAAAAAT
*
7816119 TT-AAAATAATAAAAGT
1 TTAAAAATAA-AAAAAT
7816135 TTAAAAATAAAAAAAT
1 TTAAAAATAAAAAAAT
7816151 T
1 T
7816152 AATCATGGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 6 0.22
16 14 0.52
17 7 0.26
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (16 bp):
TTAAAAATAAAAAAAT
Found at i:7818947 original size:23 final size:25
Alignment explanation
Indices: 7818910--7818956 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
7818900 TTTTGACTTC
*
7818910 AATATTAAATTTTTAAT-TTTTTAT
1 AATATTAAATATTTAATATTTTTAT
*
7818934 AATA-TAAATATTTACTATTTTTA
1 AATATTAAATATTTAATATTTTTA
7818957 ACATAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
AATATTAAATATTTAATATTTTTAT
Found at i:7822294 original size:6 final size:6
Alignment explanation
Indices: 7822283--7822333 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
7822273 GTCTTTAATC
* * * *
7822283 ATGACG ATGACG ATGGTG ACGAATG ATGATG ATGATG ATGATG ATGATG
1 ATGATG ATGATG ATGATG ATGA-TG ATGATG ATGATG ATGATG ATGATG
7822332 AT
1 AT
7822334 CATTATTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.33, C:0.06, G:0.33, T:0.27
Consensus pattern (6 bp):
ATGATG
Found at i:7822313 original size:3 final size:3
Alignment explanation
Indices: 7822305--7822333 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7822295 ATGGTGACGA
7822305 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
7822334 CATTATTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:7825955 original size:16 final size:16
Alignment explanation
Indices: 7825934--7825971 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
7825924 AGAAACTAAG
7825934 GGTGTTCATCAGGATC
1 GGTGTTCATCAGGATC
7825950 GGTGTTCATCAGGATC
1 GGTGTTCATCAGGATC
*
7825966 AGTGTT
1 GGTGTT
7825972 TTCCAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (16 bp):
GGTGTTCATCAGGATC
Found at i:7841659 original size:3 final size:3
Alignment explanation
Indices: 7841653--7841680 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7841643 TGATGATGAT
7841653 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
7841681 GGTTGGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7843026 original size:28 final size:26
Alignment explanation
Indices: 7842993--7843054 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 26
7842983 TAATAATTAA
*
7842993 AATATATATTTTATATAAATTTAAAAAT
1 AATATATATATTATATAAA-TT-AAAAT
*
7843021 AATATATAATATTATATATATTAAAAT
1 AATATAT-ATATTATATAAATTAAAAT
7843048 -ATATATA
1 AATATATA
7843055 ATATAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 5 0.16
28 9 0.29
29 10 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
AATATATATATTATATAAATTAAAAT
Found at i:7843051 original size:26 final size:25
Alignment explanation
Indices: 7842981--7843058 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 25
7842971 TGAAATAAAA
7842981 ATTA-ATAATTAAAATATATAT--T
1 ATTATATAATTAAAATATATATAAT
7843003 -TTATATAAATTTAAAAATAATATATAAT
1 ATTATAT-AA-TT-AAAAT-ATATATAAT
7843031 ATTATATATATTAAAATATATATAAT
1 ATTATATA-ATTAAAATATATATAAT
7843057 AT
1 AT
7843059 AAATTTAATG
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.06
22 2 0.04
23 2 0.04
24 2 0.04
25 5 0.11
26 17 0.36
27 5 0.11
28 4 0.09
29 7 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTATATAATTAAAATATATATAAT
Found at i:7850603 original size:63 final size:64
Alignment explanation
Indices: 7850485--7850613 Score: 242
Period size: 63 Copynumber: 2.0 Consensus size: 64
7850475 GATGTGTTAG
*
7850485 TGCATTTAAGATTAAGCCATGCATGTCTAAGTATGAACTAGTTCGGACATTGAAAAACTGCAAA
1 TGCATTTAAGATTAAGCCATGCATGTCTAAGTATGAACTAGTTCAGACATTGAAAAACTGCAAA
7850549 TGCATTTAAGATTAAGCCATGCATGTC-AAGTATGAACTAGTTCAGACATTGAAAAACTGCAAA
1 TGCATTTAAGATTAAGCCATGCATGTCTAAGTATGAACTAGTTCAGACATTGAAAAACTGCAAA
7850612 TG
1 TG
7850614 GCTCACTAAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
63 37 0.58
64 27 0.42
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (64 bp):
TGCATTTAAGATTAAGCCATGCATGTCTAAGTATGAACTAGTTCAGACATTGAAAAACTGCAAA
Found at i:7856011 original size:30 final size:30
Alignment explanation
Indices: 7855967--7856027 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
7855957 GAATGAAGCT
*
7855967 ACTATAATGGTCTGGTTGCAATGAACAAAA
1 ACTAAAATGGTCTGGTTGCAATGAACAAAA
* *
7855997 ACTAAAATTGTCTGGTTGCAATGAATAAAA
1 ACTAAAATGGTCTGGTTGCAATGAACAAAA
7856027 A
1 A
7856028 GCATTACTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.28
Consensus pattern (30 bp):
ACTAAAATGGTCTGGTTGCAATGAACAAAA
Found at i:7857517 original size:17 final size:17
Alignment explanation
Indices: 7857472--7857534 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
7857462 AATATAGTTA
7857472 AAAT-AAATAAAAAA-T
1 AAATCAAATAAAAAATT
* *
7857487 AAATCAAGT-TAAAATT
1 AAATCAAATAAAAAATT
7857503 AAAAT-AAATAAAAAATT
1 -AAATCAAATAAAAAATT
7857520 AAATCAAATAAAAAA
1 AAATCAAATAAAAAA
7857535 AGTTAAACAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 8 0.21
16 11 0.28
17 20 0.51
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATCAAATAAAAAATT
Found at i:7857532 original size:32 final size:32
Alignment explanation
Indices: 7857469--7857532 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7857459 TATAATATAG
*
7857469 TTAAAATAAATAAAAAATAAATCAAGTTAAAA
1 TTAAAATAAATAAAAAATAAATCAAGATAAAA
7857501 TTAAAATAAATAAAAAATTAAATCAA-ATAAAA
1 TTAAAATAAATAAAAAA-TAAATCAAGATAAAA
7857533 AAAGTTAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 22 0.73
33 8 0.27
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (32 bp):
TTAAAATAAATAAAAAATAAATCAAGATAAAA
Found at i:7857863 original size:20 final size:19
Alignment explanation
Indices: 7857823--7857861 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7857813 AAATGTTTAT
*
7857823 ATTTATAATAAACATTCAA
1 ATTTATAATAAAAATTCAA
7857842 ATTT-TAATAAAAATATCAA
1 ATTTATAATAAAAAT-TCAA
7857861 A
1 A
7857862 ATCAAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTTATAATAAAAATTCAA
Found at i:7860502 original size:2 final size:2
Alignment explanation
Indices: 7860495--7860528 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7860485 GTTGATGAGG
7860495 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7860529 ACTGTTCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7885653 original size:17 final size:17
Alignment explanation
Indices: 7885617--7885664 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
7885607 TATCAATTTC
** *
7885617 AATTATATATATATACA
1 AATTATATATATGCAAA
7885634 AATTATATATATGCAAA
1 AATTATATATATGCAAA
7885651 AATGTA-ATATATGC
1 AAT-TATATATATGC
7885665 TTTTGTGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
AATTATATATATGCAAA
Found at i:7890016 original size:39 final size:39
Alignment explanation
Indices: 7889968--7890044 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
7889958 GAAATCTCAC
*
7889968 GACTGGCTCCAGAATTTCCAGCAGGATTTGCTTGTGCAA
1 GACTAGCTCCAGAATTTCCAGCAGGATTTGCTTGTGCAA
7890007 GACTAGCTCCAGAATTTCCAGCAGGATTTGCTTGTGCA
1 GACTAGCTCCAGAATTTCCAGCAGGATTTGCTTGTGCA
7890045 GCATCTTGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (39 bp):
GACTAGCTCCAGAATTTCCAGCAGGATTTGCTTGTGCAA
Found at i:7893771 original size:15 final size:17
Alignment explanation
Indices: 7893745--7893783 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
7893735 CATCTTATTC
7893745 ATAAATAAA-TTTAAAA
1 ATAAATAAATTTTAAAA
*
7893761 ATAAA-AAATTTTCAAA
1 ATAAATAAATTTTAAAA
7893777 ATAAATA
1 ATAAATA
7893784 TTTATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 3 0.15
16 16 0.80
17 1 0.05
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAAATAAATTTTAAAA
Found at i:7893859 original size:19 final size:19
Alignment explanation
Indices: 7893827--7893863 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7893817 CTTTTTATCA
7893827 TTTATTTTTGTAAAATTTTT
1 TTTATTTTTGT-AAATTTTT
7893847 TTTATTTTT-TAAATTTT
1 TTTATTTTTGTAAATTTT
7893864 AATCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 1 0.06
20 9 0.53
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (19 bp):
TTTATTTTTGTAAATTTTT
Found at i:7898598 original size:2 final size:2
Alignment explanation
Indices: 7898591--7898636 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
7898581 AAGAATCGTA
7898591 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7898633 CT CT
1 CT CT
7898637 TCCCCACTGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7915684 original size:22 final size:21
Alignment explanation
Indices: 7915654--7915702 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7915644 TAGTTTTATG
* *
7915654 AAAAGAAAGACAAAAATAAGAA
1 AAAAAAAAGA-AAAAAGAAGAA
*
7915676 AAAAAAAAGAAGAAAGAAGAA
1 AAAAAAAAGAAAAAAGAAGAA
7915697 AAAAAA
1 AAAAAA
7915703 TTCAAGCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAGAAGAA
Found at i:7939380 original size:10 final size:11
Alignment explanation
Indices: 7939336--7939383 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
7939326 TTTTTTTATT
7939336 ATATATATATA
1 ATATATATATA
* * *
7939347 ATTTGATATTTG
1 ATAT-ATATATA
7939359 ATATATATATA
1 ATATATATATA
7939370 ATATA-ATATA
1 ATATATATATA
7939380 ATAT
1 ATAT
7939384 GATTAATGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
10 9 0.30
11 13 0.43
12 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (11 bp):
ATATATATATA
Found at i:7947313 original size:17 final size:17
Alignment explanation
Indices: 7947293--7947326 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7947283 TAAAATTTTA
7947293 TTTTA-AATTAAATAATT
1 TTTTATAATT-AATAATT
7947310 TTTTATAATTAATAATT
1 TTTTATAATTAATAATT
7947327 AATAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATAATTAATAATT
Found at i:7947360 original size:20 final size:20
Alignment explanation
Indices: 7947295--7947360 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 20
7947285 AAATTTTATT
7947295 TTAAATT-AAATAAT-TTT-
1 TTAAATTAAAATAATATTTA
7947312 TTATAATTAATAATTAATAATTATAA
1 TTA-AATTAA-AA-TAAT-ATT-T-A
7947338 TTAAATTAAAATAATATTTA
1 TTAAATTAAAATAATATTTA
7947358 TTA
1 TTA
7947361 TTTTATATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
17 3 0.08
18 4 0.10
19 1 0.03
20 6 0.15
21 5 0.12
22 3 0.08
23 6 0.15
24 3 0.08
25 6 0.15
26 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAATTAAAATAATATTTA
Found at i:7952756 original size:17 final size:19
Alignment explanation
Indices: 7952729--7952766 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7952719 TAATTAAAGT
7952729 AATTTTGTAAT-TGATTTA
1 AATTTTGTAATATGATTTA
*
7952747 AATTTT-TAATATTATTTA
1 AATTTTGTAATATGATTTA
7952765 AA
1 AA
7952767 AAATTTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
AATTTTGTAATATGATTTA
Found at i:7953535 original size:20 final size:20
Alignment explanation
Indices: 7953510--7953549 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7953500 GGGAACAAAA
7953510 TGAAATTATTGTCAAAGAAT
1 TGAAATTATTGTCAAAGAAT
7953530 TGAAATTATTGTCAAAGAAT
1 TGAAATTATTGTCAAAGAAT
7953550 AGACAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (20 bp):
TGAAATTATTGTCAAAGAAT
Found at i:7953559 original size:20 final size:20
Alignment explanation
Indices: 7953511--7953559 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
7953501 GGAACAAAAT
* *
7953511 GAAATTATTGTCAAAGAATT
1 GAAAGTATTGTCAAAGAATA
*
7953531 GAAATTATTGTCAAAGAATA
1 GAAAGTATTGTCAAAGAATA
*
7953551 GACAGTATT
1 GAAAGTATT
7953560 ATTCATGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
GAAAGTATTGTCAAAGAATA
Found at i:7956325 original size:20 final size:20
Alignment explanation
Indices: 7956290--7956327 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7956280 AAATGCCATT
*
7956290 AAAACAAATAGGCCAATGAG
1 AAAACAAATAGACCAATGAG
*
7956310 AAAACAAATTGACCAATG
1 AAAACAAATAGACCAATG
7956328 CCAATGAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (20 bp):
AAAACAAATAGACCAATGAG
Found at i:7964655 original size:29 final size:29
Alignment explanation
Indices: 7964607--7964664 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
7964597 AGCCCAGAAT
*
7964607 CCAATGCAGGACTCAGATTACACTCCTGA
1 CCAATGCAGGACTCAAATTACACTCCTGA
*
7964636 CCAATGCAGGATTCAAATTACACTCCTGA
1 CCAATGCAGGACTCAAATTACACTCCTGA
7964665 ATTTCCTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (29 bp):
CCAATGCAGGACTCAAATTACACTCCTGA
Found at i:7965745 original size:2 final size:2
Alignment explanation
Indices: 7965738--7965766 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7965728 CACTACTTAT
7965738 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7965767 TAGATTTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7973468 original size:3 final size:3
Alignment explanation
Indices: 7973460--7973484 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7973450 ATTCATTCAT
7973460 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
7973485 TCTTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7976054 original size:32 final size:32
Alignment explanation
Indices: 7976002--7976069 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
7975992 TACATGTTAT
* * *
7976002 AATTAAAATAAAATATATATATAAGAAGTAAA
1 AATTAAAATAAAATAAATATAAAAAAAGTAAA
*
7976034 AATT-AAATAAAATAAAATATAAAAAAATTAAA
1 AATTAAAATAAAAT-AAATATAAAAAAAGTAAA
7976066 AATT
1 AATT
7976070 TATATAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 9 0.29
32 22 0.71
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (32 bp):
AATTAAAATAAAATAAATATAAAAAAAGTAAA
Found at i:7976106 original size:31 final size:30
Alignment explanation
Indices: 7976002--7976106 Score: 98
Period size: 31 Copynumber: 3.6 Consensus size: 30
7975992 TACATGTTAT
7976002 AATTAAAATAAAATATATATATAAG-AAGTAAA
1 AATTAAAATAAAATATA-ATATAAGTAA--AAA
7976034 AATT-AAATAAAATA-AA-AT-A-TAAAAA
1 AATTAAAATAAAATATAATATAAGTAAAAA
**
7976059 AATTAAAA-ATTTATATAATATAAGTAAAATA
1 AATTAAAATA-AAATATAATATAAGTAAAA-A
7976090 AATTAAAATAAAATATA
1 AATTAAAATAAAATATA
7976107 TCATATAAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
25 8 0.13
26 6 0.10
27 5 0.08
28 4 0.07
29 2 0.03
30 6 0.10
31 24 0.40
32 5 0.08
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (30 bp):
AATTAAAATAAAATATAATATAAGTAAAAA
Found at i:7976134 original size:8 final size:8
Alignment explanation
Indices: 7976123--7976180 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
7976113 AAAAATATAT
*
7976123 TAAAAAAC
1 TAAAAAAA
7976131 TAAAAAAA
1 TAAAAAAA
*
7976139 TAAAATATA
1 TAAAA-AAA
**
7976148 TAAAATTA
1 TAAAAAAA
7976156 TAATAAAAA
1 TAA-AAAAA
7976165 TATAAAAAA
1 TA-AAAAAA
7976174 TAAAAAA
1 TAAAAAA
7976181 TATATGACAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
8 22 0.52
9 19 0.45
10 1 0.02
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (8 bp):
TAAAAAAA
Found at i:7976149 original size:36 final size:37
Alignment explanation
Indices: 7976038--7976185 Score: 119
Period size: 36 Copynumber: 3.9 Consensus size: 37
7976028 AGTAAAAATT
* * *
7976038 AAATAAAAT-AAAATATAAAAAAATTAAAAATTTAT-A
1 AAATATAATAAAAATAT-AAAAAATAAAAAATATATAA
*
7976074 TAATATAAGT-AAAATA-AATTAAAATAAAATATATCATATAA
1 AAATATAA-TAAAAATATAA--AAAATAAAA-A-AT-ATATAA
* *
7976115 AAATATATTAAAAA-ACTAAAAAA-ATAAAATATATAA
1 AAATATAATAAAAATA-TAAAAAATAAAAAATATATAA
*
7976151 AATTATAATAAAAATATAAAAAATAAAAAATATAT
1 AAATATAATAAAAATATAAAAAATAAAAAATATAT
7976186 GACATTAAAA
Statistics
Matches: 90, Mismatches: 10, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
35 2 0.02
36 31 0.34
37 28 0.31
38 2 0.02
39 5 0.06
40 9 0.10
41 11 0.12
42 2 0.02
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (37 bp):
AAATATAATAAAAATATAAAAAATAAAAAATATATAA
Found at i:7976163 original size:26 final size:26
Alignment explanation
Indices: 7975998--7976166 Score: 77
Period size: 26 Copynumber: 6.5 Consensus size: 26
7975988 TTTATACATG
* *
7975998 TTATAATTAAAATAAAATATAT-ATA
1 TTATAATAAAAATAAAATATATAAAA
* * * *
7976023 TAAGAAGTAAAAATTAAATAAAATAAAA
1 TTATAA-TAAAAATAAAAT-ATATAAAA
* *
7976051 -TATAA-AAAAATTAAAAATTTATATAA
1 TTATAATAAAAA-T-AAAATATATAAAA
* *
7976077 -TATAAGT-AAAATAAATTAAAATAAAA
1 TTATAA-TAAAAATAAAAT-ATATAAAA
* * *
7976103 TATATCATATAAA-AATATAT-TAAAA
1 T-TATAATAAAAATAAAATATATAAAA
*
7976128 -AACTAA-AAAAATAAAATATATAAAA
1 TTA-TAATAAAAATAAAATATATAAAA
7976153 TTATAATAAAAATA
1 TTATAATAAAAATA
7976167 TAAAAAATAA
Statistics
Matches: 102, Mismatches: 26, Indels: 31
0.64 0.16 0.19
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 26 0.25
26 36 0.35
27 18 0.18
28 9 0.09
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (26 bp):
TTATAATAAAAATAAAATATATAAAA
Found at i:7976297 original size:22 final size:23
Alignment explanation
Indices: 7976215--7976314 Score: 73
Period size: 23 Copynumber: 4.2 Consensus size: 23
7976205 AGATGATATT
*
7976215 ATATAAAAATTAATAATAA-AAAA
1 ATATAAATA-TAATAATAATAAAA
*
7976238 ATATAAATATATTAA-AATAAAAA
1 ATATAAATATAATAATAAT-AAAA
7976261 TATATTAAGATTATAATAATAATAAAA
1 -ATA-TAA-A-TATAATAATAATAAAA
*
7976288 ATA-AAATATATGATATTAA-AAAA
1 ATATAAATATA--ATAATAATAAAA
7976311 ATAT
1 ATAT
7976315 TAGAAGAGAG
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
21 2 0.03
22 9 0.14
23 20 0.32
24 11 0.17
25 3 0.05
26 4 0.06
27 11 0.17
28 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
ATATAAATATAATAATAATAAAA
Found at i:7976343 original size:116 final size:119
Alignment explanation
Indices: 7976135--7976373 Score: 298
Period size: 113 Copynumber: 2.0 Consensus size: 119
7976125 AAAAACTAAA
*
7976135 AAAATAAAATATATAAAATTATAATAAAAATATAAAAAATAAAAAATATATGACATTAAAAATAT
1 AAAATAAAATATATAAAATTATAATAAAAATATAAAAAAT-AAAAATATATGACATTAAAAAAAT
7976200 ATAAGAGATGATATTATATAAAAATTAATAA-TA-A-AAA-AATATAAATATATT
65 ATAAGAGATGATATTATATAAAAATTAATAAGTATAGAAATAATATAAATATATT
* * *
7976251 AAAATAAAAATATATTAAGATTATAAT-AATA-AT-AAAAAT-AAAATATATGATATTAAAAAAA
1 AAAAT-AAAATATA-TAAAATTATAATAAAAATATAAAAAATAAAAATATATGACATTAAAAAAA
* *
7976312 TATTAGAAGA-GAGTATTATATAAATAGATTAATAAGTATAGAAATAATATAGATATATT
64 TATAAG-AGATGA-TATTATATAAA-A-ATTAATAAGTATAGAAATAATATAAATATATT
7976371 AAA
1 AAA
7976374 CTTGTATTTT
Statistics
Matches: 107, Mismatches: 6, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
113 27 0.25
114 14 0.13
115 7 0.07
116 15 0.14
117 13 0.12
118 12 0.11
119 3 0.03
120 16 0.15
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (119 bp):
AAAATAAAATATATAAAATTATAATAAAAATATAAAAAATAAAAATATATGACATTAAAAAAATA
TAAGAGATGATATTATATAAAAATTAATAAGTATAGAAATAATATAAATATATT
Found at i:7987535 original size:41 final size:42
Alignment explanation
Indices: 7987490--7988025 Score: 340
Period size: 41 Copynumber: 13.1 Consensus size: 42
7987480 TGACTCGAGT
**
7987490 GGGGGGGGGGGGGGAATCAGGTTAGGAGTCGGGA-TC-TGGAA
1 GGGGGGGCCGGGGGAATCAGGTT-GGAGTCGGGACTCGTGGAA
* *
7987531 -GGGGGACCAGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
1 GGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
* * *
7987572 -GGGGGACCAGGGGAATCAGGTTGGAGTAGGGACTCGTGGAA
1 GGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
* * *
7987613 -GGGGGGCCGGGGGAATTAGGTCGAGAGTCGAGA-TCGTGG-A
1 GGGGGGGCCGGGGGAATCAGGTTG-GAGTCGGGACTCGTGGAA
* * * * *
7987653 --GGGGGCTGAGAGGAATCAGGTCTGGAGTCGAGACTCATGGGA
1 GGGGGGGCCG-GGGGAATCAGGT-TGGAGTCGGGACTCGTGGAA
** *
7987695 -GGGGGGCC-GGGGAATCAGGTCTAAACTC-GG--T-G-GG--
1 GGGGGGGCCGGGGGAATCAGGT-TGGAGTCGGGACTCGTGGAA
* ** ** * ** *
7987729 GGGGGGG-GGGGGGAAGGGAAATTAGGTAATTTGGACTCGAGG--
1 GGGGGGGCCGGGGGAA-TCAGGTT-GG-AGTCGGGACTCGTGGAA
**
7987771 GGGGGGGGAGGGGGAATCA-GTTGGAGTCGGGACTCGTGGAA
1 GGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
*
7987812 -GGGGGACCAGGGGGAATCAGGTTAGGAGTCGGGACTCGTGGAA
1 GGGGGGGCC-GGGGGAATCAGGTT-GGAGTCGGGACTCGTGGAA
* *
7987855 -GGGGGACCAGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
1 GGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
* * *
7987896 -GGGGGGCCGGGGGAATTAGGTCGAGAGTCGAGACTCGTGG--
1 GGGGGGGCCGGGGGAATCAGGTTG-GAGTCGGGACTCGTGGAA
* * * * *
7987936 GAGGGGGCTGAGAGGAATCAGGTCTGGAGTCGAGACTCATGG-A
1 GGGGGGGCCG-GGGGAATCAGGT-TGGAGTCGGGACTCGTGGAA
* ** *
7987979 --GGGGGCGGGGGGAATCAGGTCTAAAGTCGGGACTCGTGGGA
1 GGGGGGGCCGGGGGAATCAGGT-TGGAGTCGGGACTCGTGGAA
7988020 GGGGGG
1 GGGGGG
7988026 ATTCATGAGT
Statistics
Matches: 402, Mismatches: 61, Indels: 62
0.77 0.12 0.12
Matches are distributed among these distances:
35 13 0.03
36 4 0.01
37 2 0.00
38 3 0.01
39 28 0.07
40 75 0.19
41 158 0.39
42 74 0.18
43 45 0.11
ACGTcount: A:0.21, C:0.12, G:0.51, T:0.15
Consensus pattern (42 bp):
GGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGACTCGTGGAA
Found at i:7987626 original size:82 final size:82
Alignment explanation
Indices: 7987500--7988025 Score: 409
Period size: 82 Copynumber: 6.5 Consensus size: 82
7987490 GGGGGGGGGG
* *
7987500 GGGGAATCAGGTTAGGAGTCGGGA-TC-TGGAAGGGGGACCAGGGGAATCAGGTTGGAGTCGGGA
1 GGGGAATCAGGTT-GGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGA
7987563 CTCGTGGAAGGGGGACCA
65 CTCGTGGAAGGGGGACCA
* * * *
7987581 GGGGAATCAGGTTGGAGTAGGGACTCGTGGAAGGGGGGCCGGGGGAATTAGGTCGAGAGTCGAGA
1 GGGGAATCAGGTTGGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGTTG-GAGTCGGGA
*
7987646 -TCGTGG-AGGGGG-CTGA
65 CTCGTGGAAGGGGGAC-CA
* * * * ** *
7987662 GAGGAATCAGGTCTGGAGTCGAGACTCATGGGAGGGGGGCC-GGGGAATCAGGTCTAAACTCGGT
1 GGGGAATCAGGT-TGGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGT-TGGAGTCGG-
**** * **
7987726 GGGGGGGGGGGGGGGGA--A
63 GACTCGTGGAAGGGGGACCA
* * * ** * * **
7987744 GGGAAATTAGG-T--AATTTGGACTCGAGG-GGGGGGGGAGGGGGAATCA-GTTGGAGTCGGGAC
1 GGGGAATCAGGTTGGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGAC
7987804 TCGTGGAAGGGGGACCA
66 TCGTGGAAGGGGGACCA
* *
7987821 GGGGGAATCAGGTTAGGAGTCGGGACTCGTGGAAGGGGGACCAGGGGAATCAGGTTGGAGTCGGG
1 -GGGGAATCAGGTT-GGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGTTGGAGTCGGG
* *
7987886 ACTCGTGGAAGGGGGGCCG
64 ACTCGTGGAAGGGGGACCA
* * * * * * *
7987905 GGGGAATTAGGTCGAGAGTCGAGACTCGTGGGA-GGGGGCTGAGAGGAATCAGGTCTGGAGTCGA
1 GGGGAATCAGGTTG-GAGTCGGGACTCGTGGAAGGGGGGCCG-GGGGAATCAGGT-TGGAGTCGG
* **
7987969 GACTCATGG-AGGGGG-CGG
63 GACTCGTGGAAGGGGGACCA
** *
7987987 GGGGAATCAGGTCTAAAGTCGGGACTCGTGGGAGGGGGG
1 GGGGAATCAGGT-TGGAGTCGGGACTCGTGGAAGGGGGG
7988026 ATTCATGAGT
Statistics
Matches: 346, Mismatches: 74, Indels: 48
0.74 0.16 0.10
Matches are distributed among these distances:
75 10 0.03
76 6 0.02
77 9 0.03
78 27 0.08
79 1 0.00
80 11 0.03
81 48 0.14
82 110 0.32
83 74 0.21
84 50 0.14
ACGTcount: A:0.22, C:0.13, G:0.50, T:0.15
Consensus pattern (82 bp):
GGGGAATCAGGTTGGAGTCGGGACTCGTGGAAGGGGGGCCGGGGGAATCAGGTTGGAGTCGGGAC
TCGTGGAAGGGGGACCA
Found at i:8025138 original size:39 final size:39
Alignment explanation
Indices: 8025095--8025173 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
8025085 GGCTCAAAAT
*
8025095 GCTTTGAATTAAAGTTAAGATACGTGTAATTATCATTAA
1 GCTTTGAATTAAAGTTAAGATACATGTAATTATCATTAA
*
8025134 GCTTTGAATTAAAGTTATGATACATGTAATTATCATTAA
1 GCTTTGAATTAAAGTTAAGATACATGTAATTATCATTAA
8025173 G
1 G
8025174 TCAGATAATC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (39 bp):
GCTTTGAATTAAAGTTAAGATACATGTAATTATCATTAA
Found at i:8044363 original size:12 final size:12
Alignment explanation
Indices: 8044346--8044370 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8044336 AAAGATCAGG
8044346 AAACAGAGAGAA
1 AAACAGAGAGAA
8044358 AAACAGAGAGAA
1 AAACAGAGAGAA
8044370 A
1 A
8044371 CAGAGATGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.24, T:0.00
Consensus pattern (12 bp):
AAACAGAGAGAA
Found at i:8053938 original size:16 final size:17
Alignment explanation
Indices: 8053907--8053939 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8053897 ATCTCGATTT
8053907 AAAATTAATAATATAAA
1 AAAATTAATAATATAAA
*
8053924 AAAATTATTAA-ATAAA
1 AAAATTAATAATATAAA
8053940 GATAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTAATAATATAAA
Found at i:8062340 original size:40 final size:39
Alignment explanation
Indices: 8062296--8062373 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
8062286 AAACCACCTT
8062296 CCAAAAATAAAATCCAAA-AAAGAAACAAAAGGAAAAAATC
1 CCAAAAATAAAATCCAAATAAA-AAA-AAAAGGAAAAAATC
* **
8062336 CCAAAAATTAAATTTAAATTAAAAAAAAAAGGAAAAAA
1 CCAAAAATAAAATCCAAA-TAAAAAAAAAAGGAAAAAA
8062374 AAATGACAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 27 0.82
41 3 0.09
42 3 0.09
ACGTcount: A:0.71, C:0.10, G:0.06, T:0.13
Consensus pattern (39 bp):
CCAAAAATAAAATCCAAATAAAAAAAAAAGGAAAAAATC
Found at i:8078701 original size:6 final size:6
Alignment explanation
Indices: 8078690--8078728 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
8078680 AATTCTCTTC
* * *
8078690 TCTCCT TCTCCT TCTCCT TCTCCC TCTCCC TCTTCT TCT
1 TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCT
8078729 TTGAATTCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
TCTCCT
Found at i:8081084 original size:25 final size:25
Alignment explanation
Indices: 8081055--8081112 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
8081045 TAGTTTTTCC
8081055 TGAAATTCTTCAGGAGGTTTTGAAG
1 TGAAATTCTTCAGGAGGTTTTGAAG
*
8081080 TGAAATTATTCAGGAGGTTTTGAAG
1 TGAAATTCTTCAGGAGGTTTTGAAG
8081105 TGAAATTC
1 TGAAATTC
8081113 AGTTTATAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (25 bp):
TGAAATTCTTCAGGAGGTTTTGAAG
Found at i:8084945 original size:15 final size:15
Alignment explanation
Indices: 8084925--8084978 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
8084915 AGCATTTAAG
8084925 GGAGAGAAGGAAAGA
1 GGAGAGAAGGAAAGA
*
8084940 GGAGAGAA-AATTTAAG-
1 GGAGAGAAGGA---AAGA
8084956 GGAGAGAAGGAAAGA
1 GGAGAGAAGGAAAGA
8084971 GGAGAGAA
1 GGAGAGAA
8084979 AAGTTAAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
14 4 0.12
15 16 0.50
16 8 0.25
17 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.43, T:0.06
Consensus pattern (15 bp):
GGAGAGAAGGAAAGA
Found at i:8084953 original size:31 final size:31
Alignment explanation
Indices: 8084918--8084987 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
8084908 AAAGGAAAGC
8084918 ATTTAAGGGAGAGAAGGAAAGAGGAGAGAAA
1 ATTTAAGGGAGAGAAGGAAAGAGGAGAGAAA
8084949 ATTTAAGGGAGAGAAGGAAAGAGGAGAGAAA
1 ATTTAAGGGAGAGAAGGAAAGAGGAGAGAAA
*
8084980 AGTTAAGG
1 ATTTAAGG
8084988 ATATGCACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (31 bp):
ATTTAAGGGAGAGAAGGAAAGAGGAGAGAAA
Found at i:8088283 original size:3 final size:3
Alignment explanation
Indices: 8088275--8088301 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8088265 TGCAAGCTGA
8088275 CAG CAG CAG CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG
8088302 GAAGTAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:8105974 original size:72 final size:72
Alignment explanation
Indices: 8105898--8106113 Score: 252
Period size: 72 Copynumber: 3.0 Consensus size: 72
8105888 AGTTTGTTCC
* *
8105898 TGTAGAGGTAGAGATATTCAAGATCGGTGAGGTTTCCAAGCGAGGATGGAATTTGCCCACTGAGA
1 TGTAGAGGTAGAGATATTCAAGATTGGTGAGGTTTCCAAGCGAGGATGGAATTTGTCCACTGAGA
8105963 TTGTTGT
66 TTGTTGT
* * * * * * ** * * *
8105970 TGTAGATGTAAAGTTCTTTAAGATTGGTGAGGTTCCCAAATGACGATTGAATTTGTCCATTGAGA
1 TGTAGAGGTAGAGATATTCAAGATTGGTGAGGTTTCCAAGCGAGGATGGAATTTGTCCACTGAGA
8106035 TTGTTGT
66 TTGTTGT
* * ** * * *
8106042 TGAAGAGGGAGAGGCATTGAAGATTGGTGAGGTTTCCAAGCGAGGAAGGAATTTGTCCACTGAAA
1 TGTAGAGGTAGAGATATTCAAGATTGGTGAGGTTTCCAAGCGAGGATGGAATTTGTCCACTGAGA
8106107 TTGTTGT
66 TTGTTGT
8106114 AGGCAAGATC
Statistics
Matches: 115, Mismatches: 29, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
72 115 1.00
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (72 bp):
TGTAGAGGTAGAGATATTCAAGATTGGTGAGGTTTCCAAGCGAGGATGGAATTTGTCCACTGAGA
TTGTTGT
Found at i:8130788 original size:1 final size:1
Alignment explanation
Indices: 8130782--8130808 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
8130772 ATAGATCACC
8130782 GGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGG
8130809 TGGAGTGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:8133018 original size:14 final size:14
Alignment explanation
Indices: 8132999--8133032 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
8132989 CCAAGAGAGC
8132999 CATGAAGCATATAG
1 CATGAAGCATATAG
8133013 CATGAAGCATATAG
1 CATGAAGCATATAG
8133027 CATGAA
1 CATGAA
8133033 ACATGGGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.21
Consensus pattern (14 bp):
CATGAAGCATATAG
Found at i:8137385 original size:30 final size:30
Alignment explanation
Indices: 8137350--8137413 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
8137340 CATGAATGTC
*
8137350 GCTTTCCACTCAAATCTAGATTCAAAATCT
1 GCTTTCCACTCAAATCCAGATTCAAAATCT
8137380 GCTTTCCACTCAAATCCAGATTCAAAATCT
1 GCTTTCCACTCAAATCCAGATTCAAAATCT
8137410 GCTT
1 GCTT
8137414 CATCATGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (30 bp):
GCTTTCCACTCAAATCCAGATTCAAAATCT
Done.