Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8984705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 112788 characters in sequence are not A, C, G, or T
File 6 of 20
Found at i:1953580 original size:3 final size:3
Alignment explanation
Indices: 1953572--1953670 Score: 59
Period size: 3 Copynumber: 33.7 Consensus size: 3
1953562 CCTTATATAT
* *
1953572 TTA TTA TTA TTTA TCA TTA TTA TT- TT- TTA TTA TTTG TTA TT- TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * *
1953616 TT- TTA TTA TTA TTTC TTA CATA TTA TTTA TT- TTT TTA -TA TTA TTA
1 TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TTA TTA
1953661 TTA TT- TTA TT
1 TTA TTA TTA TT
1953671 TATTTTTTTG
Statistics
Matches: 76, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
2 14 0.18
3 50 0.66
4 12 0.16
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:1953601 original size:20 final size:19
Alignment explanation
Indices: 1953578--1953673 Score: 75
Period size: 17 Copynumber: 5.4 Consensus size: 19
1953568 ATATTTATTA
1953578 TTATTTATCATTATTATTTT
1 TTATTTAT-ATTATTATTTT
*
1953598 TTA-TTAT-TTGTTA--TT
1 TTATTTATATTATTATTTT
*
1953613 TTATTT-TATTATTATTTC
1 TTATTTATATTATTATTTT
* *
1953631 TTA--CATATTATT-TATT
1 TTATTTATATTATTATTTT
1953647 TT-TTTATATTATTATTATT
1 TTATTTATATTATTATT-TT
1953666 TTATTTAT
1 TTATTTAT
1953674 TTTTTTGAGC
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
15 6 0.10
16 11 0.19
17 20 0.34
18 5 0.09
19 8 0.14
20 8 0.14
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (19 bp):
TTATTTATATTATTATTTT
Found at i:1953601 original size:23 final size:23
Alignment explanation
Indices: 1953564--1953675 Score: 90
Period size: 23 Copynumber: 4.8 Consensus size: 23
1953554 ATTTATTACC
*
1953564 TTATATATTTATTATTATTTATCA
1 TTAT-TATTTTTTATTATTTATCA
* *
1953588 TTATTATTTTTTATTATTTGTTA
1 TTATTATTTTTTATTATTTATCA
*
1953611 TT-TTATTTTATTATTATTTCTTACA
1 TTATTATTTT-TTATTATTT-AT-CA
*
1953636 -TATTATTTATT-TT-TTTAT-A
1 TTATTATTTTTTATTATTTATCA
1953655 TTATTATTATTTTATTTATTT
1 TTATTATT-TTTTA-TTATTT
1953676 TTTTGAGCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
19 1 0.01
20 7 0.10
21 4 0.06
22 10 0.14
23 31 0.44
24 11 0.15
25 7 0.10
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.71
Consensus pattern (23 bp):
TTATTATTTTTTATTATTTATCA
Found at i:1954359 original size:21 final size:20
Alignment explanation
Indices: 1954303--1954344 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1954293 ATGCATTCTA
*
1954303 GTCCAAGTGTATCGATACAT
1 GTCCAAATGTATCGATACAT
*
1954323 GTCCAAATCTATCGATACAT
1 GTCCAAATGTATCGATACAT
1954343 GT
1 GT
1954345 TCTTCATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (20 bp):
GTCCAAATGTATCGATACAT
Found at i:1959356 original size:57 final size:55
Alignment explanation
Indices: 1959237--1959432 Score: 214
Period size: 57 Copynumber: 3.4 Consensus size: 55
1959227 CACACGCCTT
* * *
1959237 ATGGAGACTTACTAAATCCACATTC-CAATATCATATCATTCACCATTACCATAAATA
1 ATGGAGACTT-CTCAATCCACATTCACAATACCATATCATTCACAATT--CATAAATA
* *
1959294 ATGGAGAACTTCTCAATCCACATTCACAACAGCATATCATTCACAATTCATACAATA
1 ATGGAG-ACTTCTCAATCCACATTCACAATACCATATCATTCACAATTCATA-AATA
* * * * * *
1959351 GTGGAGACTATCTCAATCCACATTCACATTTCCATATGATTGATAATTCATATAATA
1 ATGGAGACT-TCTCAATCCACATTCACAATACCATATCATTCACAATTCATA-AATA
1959408 ATGGAGACCTTCTCAATCCACATTC
1 ATGGAGA-CTTCTCAATCCACATTC
1959433 GCATTACTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
56 7 0.06
57 88 0.73
58 25 0.21
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.30
Consensus pattern (55 bp):
ATGGAGACTTCTCAATCCACATTCACAATACCATATCATTCACAATTCATAAATA
Found at i:1959715 original size:11 final size:11
Alignment explanation
Indices: 1959699--1959723 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1959689 AATTTCATGC
1959699 TCATCAATCAA
1 TCATCAATCAA
1959710 TCATCAATCAA
1 TCATCAATCAA
1959721 TCA
1 TCA
1959724 CTTCGTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (11 bp):
TCATCAATCAA
Found at i:1964809 original size:2 final size:2
Alignment explanation
Indices: 1964802--1964834 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1964792 AGTCGGTATT
1964802 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1964835 TTCTAATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1974120 original size:12 final size:12
Alignment explanation
Indices: 1974103--1974128 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1974093 TTGTCCTGTA
1974103 TGGTCCATCCAT
1 TGGTCCATCCAT
1974115 TGGTCCATCCAT
1 TGGTCCATCCAT
1974127 TG
1 TG
1974129 ACTCTAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.19, T:0.35
Consensus pattern (12 bp):
TGGTCCATCCAT
Found at i:1978868 original size:27 final size:25
Alignment explanation
Indices: 1978838--1978895 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
1978828 CTATATAATT
*
1978838 TATTAATTAAAATACATAATAAAAATA
1 TATTAATTAAAAT--ATAATAAAAACA
*
1978865 TATT-ATTTAAATATAATAAAAACA
1 TATTAATTAAAATATAATAAAAACA
1978889 TATTAAT
1 TATTAAT
1978896 AAACTAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 15 0.54
25 2 0.07
26 7 0.25
27 4 0.14
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (25 bp):
TATTAATTAAAATATAATAAAAACA
Found at i:1981559 original size:36 final size:36
Alignment explanation
Indices: 1981519--1981594 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
1981509 TCAACTCAGT
* *
1981519 TCATGTGCACTCCCACACCGCACATAGCTATTATTG
1 TCATGTGCACTCCCACACCGCACATAGCCATCATTG
* *
1981555 TCATGTGCACTCTCACACTGCACATAGCCATCATTG
1 TCATGTGCACTCCCACACCGCACATAGCCATCATTG
1981591 TCAT
1 TCAT
1981595 CATGAGCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (36 bp):
TCATGTGCACTCCCACACCGCACATAGCCATCATTG
Found at i:1983830 original size:14 final size:14
Alignment explanation
Indices: 1983806--1983844 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
1983796 GCTGAGCGTC
1983806 AAAAG-CCAAAACG
1 AAAAGTCCAAAACG
1983819 AAAAGTCCAAAACG
1 AAAAGTCCAAAACG
1983833 AAAAGTCCAAAA
1 AAAAGTCCAAAA
1983845 GTCATAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.62, C:0.21, G:0.13, T:0.05
Consensus pattern (14 bp):
AAAAGTCCAAAACG
Found at i:1989939 original size:2 final size:2
Alignment explanation
Indices: 1989932--1989966 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
1989922 AAGAGGATAG
1989932 AC AC AC AC A- AC AC AC AC AC AC -C AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1989967 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1989948 original size:11 final size:11
Alignment explanation
Indices: 1989932--1989966 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
1989922 AAGAGGATAG
1989932 ACACACACAAC
1 ACACACACAAC
*
1989943 ACACACACACC
1 ACACACACAAC
1989954 ACACACAC-AC
1 ACACACACAAC
1989964 ACA
1 ACA
1989967 TATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (11 bp):
ACACACACAAC
Found at i:1989950 original size:13 final size:13
Alignment explanation
Indices: 1989932--1989966 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
1989922 AAGAGGATAG
1989932 ACACACACAACAC
1 ACACACACAACAC
*
1989945 ACACACACCACAC
1 ACACACACAACAC
1989958 ACACACACA
1 ACACACACA
1989967 TATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (13 bp):
ACACACACAACAC
Found at i:2001148 original size:15 final size:16
Alignment explanation
Indices: 2001122--2001151 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2001112 TTATTAATTT
2001122 TAAAAAATTAAAATCA
1 TAAAAAATTAAAATCA
2001138 TAAAAAA-TAAAATC
1 TAAAAAATTAAAATC
2001152 TATGTAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAAAATTAAAATCA
Found at i:2001339 original size:27 final size:24
Alignment explanation
Indices: 2001293--2001346 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 24
2001283 ACATATGACC
*
2001293 AAATAAAATAGAAATGAAAACTAA
1 AAATAAAATAGAAATGAAAAATAA
*
2001317 AAATAATAATATAAATGTAAAAAATAA
1 AAATAA-AATAGAAATG--AAAAATAA
2001344 AAA
1 AAA
2001347 AAGTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 9 0.36
27 10 0.40
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (24 bp):
AAATAAAATAGAAATGAAAAATAA
Found at i:2002386 original size:23 final size:23
Alignment explanation
Indices: 2002359--2002411 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
2002349 GTTTAAAGTT
* *
2002359 TGTGACAAGCCATGGTGGGAATG
1 TGTGACAAGCCATGGTGAGAATC
* **
2002382 TGTGACATGGTATGGTGAGAATC
1 TGTGACAAGCCATGGTGAGAATC
2002405 TGTGACA
1 TGTGACA
2002412 CGGCTATGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.36, T:0.26
Consensus pattern (23 bp):
TGTGACAAGCCATGGTGAGAATC
Found at i:2002463 original size:81 final size:81
Alignment explanation
Indices: 2002324--2002513 Score: 218
Period size: 81 Copynumber: 2.3 Consensus size: 81
2002314 ACAGACCATA
* * ** ** *
2002324 TGTGACAAGACTATGACACGGTAGGGTTTAAAGTTTGTGACAAGCCATGGTGGGAATGTGTGACA
1 TGTGACAAGGCTATGACATGGTAGGGTTTAAAGTTTGAAACAAGCCATGGTGAAAATGTGTAACA
* **
2002389 TGGTATGGTGAGAATC
66 CGACATGGTGAGAATC
* * * *
2002405 TGTGACACGGCTATGACATGGTAGGGTTTAGAGTTTGAAACATGTCATGGTGAAAATGTGTAACA
1 TGTGACAAGGCTATGACATGGTAGGGTTTAAAGTTTGAAACAAGCCATGGTGAAAATGTGTAACA
*
2002470 CGACATGGTGAGAATG
66 CGACATGGTGAGAATC
* * *
2002486 TGCGACATGGCTATGACATGGCAGGGTT
1 TGTGACAAGGCTATGACATGGTAGGGTT
2002514 ATGACATGGA
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.27
Consensus pattern (81 bp):
TGTGACAAGGCTATGACATGGTAGGGTTTAAAGTTTGAAACAAGCCATGGTGAAAATGTGTAACA
CGACATGGTGAGAATC
Found at i:2002558 original size:23 final size:23
Alignment explanation
Indices: 2002515--2002627 Score: 86
Period size: 23 Copynumber: 4.9 Consensus size: 23
2002505 GGCAGGGTTA
* *
2002515 TGACATGGAATGGT-AGAAATGTG
1 TGACACGGCATGGTGAG-AATGTG
*
2002538 TGAGACGGCATGGTGAGAATGTG
1 TGACACGGCATGGTGAGAATGTG
* * * *
2002561 TGACACGGCAATGTTTAGTATTTG
1 TGACACGGC-ATGGTGAGAATGTG
** *
2002585 TGA-TTGGCCATGGTGGGAATGTG
1 TGACACGG-CATGGTGAGAATGTG
*
2002608 TGACACAGCATGGTGAGAAT
1 TGACACGGCATGGTGAGAAT
2002628 CTGTTGTCAG
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
23 50 0.75
24 17 0.25
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.27
Consensus pattern (23 bp):
TGACACGGCATGGTGAGAATGTG
Found at i:2004384 original size:23 final size:23
Alignment explanation
Indices: 2004340--2004503 Score: 125
Period size: 23 Copynumber: 7.1 Consensus size: 23
2004330 TCTGTGAAAT
* *
2004340 GACATGGTGAGAATATGGGACAC
1 GACATGGTGAGAATGTGTGACAC
*
2004363 GACATGGTGAGAATGTGTGACAA
1 GACATGGTGAGAATGTGTGACAC
* * * * * * *
2004386 GGCAAGGTTTAGAGTTTATGACAT
1 GACATGG-TGAGAATGTGTGACAC
* *
2004410 GGCATGGTGTGAATGTGTGAC-C
1 GACATGGTGAGAATGTGTGACAC
* *
2004432 TGGCATGGTGAGAATGTGTGAGAC
1 -GACATGGTGAGAATGTGTGACAC
*
2004456 AACATGGT-AGGAATGTGTGACAC
1 GACATGGTGA-GAATGTGTGACAC
* * *
2004479 GGCATAGTGGGAATGTGTGACAC
1 GACATGGTGAGAATGTGTGACAC
2004502 GA
1 GA
2004504 TATGACACAG
Statistics
Matches: 109, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
22 1 0.01
23 90 0.83
24 18 0.17
ACGTcount: A:0.29, C:0.11, G:0.36, T:0.24
Consensus pattern (23 bp):
GACATGGTGAGAATGTGTGACAC
Found at i:2004634 original size:23 final size:23
Alignment explanation
Indices: 2004606--2004691 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
2004596 TTAGATGACT
* *
2004606 TGGTGAGAATATGTGCCATGTTA
1 TGGTGAGAATATGTGACATGTCA
2004629 -GTGTGAG-A-ATGTGACATGTCA
1 TG-GTGAGAATATGTGACATGTCA
* * *
2004650 TGGTGAGAATATGCGAGATGGCA
1 TGGTGAGAATATGTGACATGTCA
2004673 TGGTGAGAATATGTGACAT
1 TGGTGAGAATATGTGACAT
2004692 AGTTGTGACA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 16 0.31
22 4 0.08
23 32 0.62
ACGTcount: A:0.29, C:0.08, G:0.34, T:0.29
Consensus pattern (23 bp):
TGGTGAGAATATGTGACATGTCA
Found at i:2005786 original size:221 final size:221
Alignment explanation
Indices: 2005403--2005892 Score: 777
Period size: 221 Copynumber: 2.2 Consensus size: 221
2005393 AGGTACTTTG
* * *
2005403 TGTAACGAAGTAGTAATTA-TAGTTGGCATGTCACGACATGGCAAGGTTGGTGTGTCACGACATG
1 TGTAACGAAGTAGTAATTATTA-TTGGCATGTCACGACATGGCAGGGTAGGTGTGTCACAACATG
* **
2005467 GCTCAGCATTGGCATGTAATAACATTTTACTTTATCTACATAATGTGTAACAACATATATTTCTT
65 GCTCAGCATTGGCATATAATAACATTTTACTTTATCTACATAACATGTAACAACATATATTTCTT
*
2005532 CAATCTAGCATGTTGTGGGTTAAATGTTTTTAGGTTTAGGTTAACATTACATGTATGGCTTCTGG
130 CAATCTAGCATGTTGTGGGTTAAATGTTTTTAGGTTTAGGGTAACATTACATGTATGGCTTCTGG
2005597 TGACCACATAGTTGTCATGGCATTTCA
195 TGACCACATAGTTGTCATGGCATTTCA
* * *
2005624 TGTAACGAAGCAGTAATTATTATTGGCATGGCATGACATGGCAGGGTAGGTGTGTCACAACATGG
1 TGTAACGAAGTAGTAATTATTATTGGCATGTCACGACATGGCAGGGTAGGTGTGTCACAACATGG
* * *
2005689 CTCAGCATTGGCATATAATAACATTTTACTTTATTTGCATAGCATGTAACAACATATA-TTCATT
66 CTCAGCATTGGCATATAATAACATTTTACTTTATCTACATAACATGTAACAACATATATTTC-TT
* *
2005753 CAGTCTAGCATGTTGTGGGTTAAATGTTTTTAGGTTTAGGGTAACATTACATGTATGGCTTGTGG
130 CAATCTAGCATGTTGTGGGTTAAATGTTTTTAGGTTTAGGGTAACATTACATGTATGGCTTCTGG
2005818 TGACCACATAGTTGTCATGGCATTTCA
195 TGACCACATAGTTGTCATGGCATTTCA
* * *
2005845 TGTAACGAAGTAGTAATTATAATTAGCGTGTCACGACATGGCATGGGT
1 TGTAACGAAGTAGTAATTATTATTGGCATGTCACGACATGGCA-GGGT
2005893 TGGCATGTTA
Statistics
Matches: 245, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
220 3 0.01
221 236 0.96
222 6 0.02
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (221 bp):
TGTAACGAAGTAGTAATTATTATTGGCATGTCACGACATGGCAGGGTAGGTGTGTCACAACATGG
CTCAGCATTGGCATATAATAACATTTTACTTTATCTACATAACATGTAACAACATATATTTCTTC
AATCTAGCATGTTGTGGGTTAAATGTTTTTAGGTTTAGGGTAACATTACATGTATGGCTTCTGGT
GACCACATAGTTGTCATGGCATTTCA
Found at i:2007695 original size:151 final size:151
Alignment explanation
Indices: 2007412--2007944 Score: 538
Period size: 151 Copynumber: 3.5 Consensus size: 151
2007402 TGTTAAGGAT
*
2007412 AGTTCTAATAGTTTATGTTCAACAATTCCATA-ATTGATTATCGAATAACACAGTAGTATCTGTT
1 AGTTCTAATAGTTTATGTTCAACAATTCCATATA-TGATTATCGAATAACACAGTAATATCTGTT
* * ** * * ** *
2007476 GTTGCAGTTTACCCATGTGATGACA-TCTCCTCAACGATCGACAAGACTTGCTCAAATTCACAGT
65 ATTGCAGTTGACCCATGCAATGACAGT-TCCTTAACGACCGACAAGACTTGCTCAAACGCATAGT
* *
2007540 GGTAATGAGTCGTCGGTAATGAC
129 GGTAAAGAGTCATCGGTAATGAC
* * *
2007563 AGTTTTAACAGTTTATGTTCAACAATTCCATATATGATTATCGAATAACATAGTAATATCTGTTA
1 AGTTCTAATAGTTTATGTTCAACAATTCCATATATGATTATCGAATAACACAGTAATATCTGTTA
* * ** *
2007628 TTACAGTTGACCCATGCAATGATAGTTCCTTAACGACCGATGAGACTTGCTCAAACGCATAATGG
66 TTGCAGTTGACCCATGCAATGACAGTTCCTTAACGACCGACAAGACTTGCTCAAACGCATAGTGG
* * * * *
2007693 TAACGAGCCATCGATAAGGAT
131 TAAAGAGTCATCGGTAATGAC
* * * * * *
2007714 GGTTCTAATGGTTTATGTTCAACAATTTCATATATGATTATTGAATAATATAGTAATATCTGTTA
1 AGTTCTAATAGTTTATGTTCAACAATTCCATATATGATTATCGAATAACACAGTAATATCTGTTA
* * ** * ** * * *
2007779 TTGTAGGTGACCCATGCAACAACAGCTCCTTAAAAACGGACAAGATTTGCTCAAACGTATAGTGG
66 TTGCAGTTGACCCATGCAATGACAGTTCCTTAACGACCGACAAGACTTGCTCAAACGCATAGTGG
*
2007844 TAAAGA-TCCA-CTAGT-ATAGAC
131 TAAAGAGT-CATC-GGTAAT-GAC
* * * * * *
2007865 GGTTCTTATAGTTTATAG-TCAACAATTCTATATTTGATTATCGAATAACACAATAATATCTGCT
1 AGTTCTAATAGTTTAT-GTTCAACAATTCCATATATGATTATCGAATAACACAGTAATATCTGTT
2007929 ATTGCAGTTGACCCAT
65 ATTGCAGTTGACCCAT
2007945 TCGACGACAG
Statistics
Matches: 312, Mismatches: 64, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
150 2 0.01
151 307 0.98
152 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (151 bp):
AGTTCTAATAGTTTATGTTCAACAATTCCATATATGATTATCGAATAACACAGTAATATCTGTTA
TTGCAGTTGACCCATGCAATGACAGTTCCTTAACGACCGACAAGACTTGCTCAAACGCATAGTGG
TAAAGAGTCATCGGTAATGAC
Found at i:2008608 original size:81 final size:81
Alignment explanation
Indices: 2008487--2008695 Score: 199
Period size: 81 Copynumber: 2.6 Consensus size: 81
2008477 TACGGGAGAG
* * * * * ** *
2008487 GATGGGGACCTTGAATCAGTT-AAGGCTAAAAGAAACCATGTTCCTCGGGCTGATGTAGTTGTCG
1 GATGGGAACCTTGAATCAGTTCAA-GCTGAAGGAGACCATGTTCCTCAGGCCAATGTAGTTGTCA
* *
2008551 AGGTAATTG-TGGGATA-A
65 AGGCAATTGCT-AGA-AGA
* * * * *
2008568 GATGGGAACCTTGAATTAGTTCAAGCTGAAGGAGATCATGTTCTTTAGGCCAATGTGGTTGTCAA
1 GATGGGAACCTTGAATCAGTTCAAGCTGAAGGAGACCATGTTCCTCAGGCCAATGTAGTTGTCAA
*
2008633 GGCAATTGCTAGAAGG
66 GGCAATTGCTAGAAGA
* * *
2008649 GATGGGAACCTTGAATCAATTCAAGTTGAAGGAGACCATGATCCTCA
1 GATGGGAACCTTGAATCAGTTCAAGCTGAAGGAGACCATGTTCCTCA
2008696 ATGCATTCCT
Statistics
Matches: 102, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
80 1 0.01
81 98 0.96
82 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (81 bp):
GATGGGAACCTTGAATCAGTTCAAGCTGAAGGAGACCATGTTCCTCAGGCCAATGTAGTTGTCAA
GGCAATTGCTAGAAGA
Found at i:2010295 original size:74 final size:74
Alignment explanation
Indices: 2010009--2010369 Score: 246
Period size: 74 Copynumber: 4.8 Consensus size: 74
2009999 GATTGATGAT
* ** * * *
2010009 GTGTCACAACAAGATGTCAATGACATCTAACAATTGGAGCATGACGTGTCATCCTATAATACTGC
1 GTGTCACGACAAGATGTCAATGACATCT-----TTAAAGCATGGCGTGTCACCCTATAATACTAC
*
2010074 AACGAC-T--CAGC
61 AACGACATGGCGGC
* * * * *
2010085 GTGTCACAACAAGATGTCAATGACATCTTTGGAATG--TGGCGTATCATCCTATAATACTGCAAC
1 GTGTCACGACAAGATGTCAATGACATCTTT--AAAGCATGGCGTGTCACCCTATAATACTACAAC
* **
2010148 GACATGGTGAT
64 GACATGGCGGC
* * ** * * * * *
2010159 GTGTCATGACAAGATGTCAATGACATATTTGGAGAATGGTGTTTCACTCTATAATACTACAATGA
1 GTGTCACGACAAGATGTCAATGACATCTTTAAAGCATGGCGTGTCACCCTATAATACTACAACGA
2010224 CATGGCGGC
66 CATGGCGGC
* * * **
2010233 ATGTCACGACGAGATGTCAATGATATCTTTAAAGCATGGCGTGTCACCCTATAATACTACAATAA
1 GTGTCACGACAAGATGTCAATGACATCTTTAAAGCATGGCGTGTCACCCTATAATACTACAACGA
***
2010298 CATAAAGGC
66 CATGGCGGC
* * * **
2010307 TTGTCATGACAAGATGTCAACGACATCTAACAATTGGAGCATGGCGTGTCACCCTATAATACT
1 GTGTCACGACAAGATGTCAATGACATCT-----TTAAAGCATGGCGTGTCACCCTATAATACT
2010370 GTAATGACTC
Statistics
Matches: 227, Mismatches: 46, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
71 30 0.13
72 2 0.01
73 1 0.00
74 138 0.61
76 28 0.12
79 28 0.12
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (74 bp):
GTGTCACGACAAGATGTCAATGACATCTTTAAAGCATGGCGTGTCACCCTATAATACTACAACGA
CATGGCGGC
Found at i:2011879 original size:5 final size:5
Alignment explanation
Indices: 2011869--2011894 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
2011859 TGAAAGGAAT
2011869 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
2011895 TTTATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:2012363 original size:23 final size:21
Alignment explanation
Indices: 2012308--2012353 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
2012298 GCTGTAGTGT
2012308 TTTTGTTGACGAATGATATAA
1 TTTTGTTGACGAATGATATAA
*
2012329 TTTTGTTAACGAATGATAT-A
1 TTTTGTTGACGAATGATATAA
2012349 TTTTG
1 TTTTG
2012354 CTATCGACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.48
Consensus pattern (21 bp):
TTTTGTTGACGAATGATATAA
Found at i:2014144 original size:33 final size:33
Alignment explanation
Indices: 2014106--2014169 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
2014096 AGCATAGGAA
* *
2014106 ATTATATTAAGAAATGAAAATAAAATATATATG
1 ATTATAATAAGAAATAAAAATAAAATATATATG
2014139 ATTATAATAAGAAATAAAAATAAAATATATA
1 ATTATAATAAGAAATAAAAATAAAATATATA
2014170 ACATTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (33 bp):
ATTATAATAAGAAATAAAAATAAAATATATATG
Found at i:2014408 original size:15 final size:15
Alignment explanation
Indices: 2014388--2014427 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
2014378 TGTATCCTGT
*
2014388 AATCACATTGC-TTGC
1 AATCACATTACATT-C
2014403 AATCACATTACATTC
1 AATCACATTACATTC
2014418 AATCACATTA
1 AATCACATTA
2014428 TTTGTAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (15 bp):
AATCACATTACATTC
Found at i:2014437 original size:30 final size:30
Alignment explanation
Indices: 2014388--2014446 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
2014378 TGTATCCTGT
*
2014388 AATCACATTGCTTGCAATCACATTACATTC
1 AATCACATTACTTGCAATCACATTACATTC
* * * *
2014418 AATCACATTATTTGTAATCATATTGCATT
1 AATCACATTACTTGCAATCACATTACATT
2014447 GTAAGGTAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (30 bp):
AATCACATTACTTGCAATCACATTACATTC
Found at i:2017722 original size:128 final size:128
Alignment explanation
Indices: 2017494--2017749 Score: 458
Period size: 128 Copynumber: 2.0 Consensus size: 128
2017484 AGTGGGTGAG
* * *
2017494 AGTGTCACAAGGAAAGTGCCTCTATCCCACATCAGGTAGGAACGGGAGGTCCTGGGCTCCTTATA
1 AGTGTCACAAGGAAAGTGCCTCTATCCCAAATCAGATAGGAACGGGAGGTCCTGAGCTCCTTATA
*
2017559 AGCGGGTGTGCTGCACACCCCTATAAGCGCGTTTATGGGGGAGAGAGTAATGACCCCGTGACA
66 AGCGGGTGTACTGCACACCCCTATAAGCGCGTTTATGGGGGAGAGAGTAATGACCCCGTGACA
*
2017622 AGTGTCACAAGGAAAGTGTCTCTATCCCAAATCAGATAGGAACGGGAGGTCCTGAGCTCCTTATA
1 AGTGTCACAAGGAAAGTGCCTCTATCCCAAATCAGATAGGAACGGGAGGTCCTGAGCTCCTTATA
*
2017687 AGCGGGTGTATTGCACACCCCTATAAGCGCGTTTATGGGGGAGAGAGTAATGACCCCGTGACA
66 AGCGGGTGTACTGCACACCCCTATAAGCGCGTTTATGGGGGAGAGAGTAATGACCCCGTGACA
2017750 CTAGAACCAA
Statistics
Matches: 122, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 122 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (128 bp):
AGTGTCACAAGGAAAGTGCCTCTATCCCAAATCAGATAGGAACGGGAGGTCCTGAGCTCCTTATA
AGCGGGTGTACTGCACACCCCTATAAGCGCGTTTATGGGGGAGAGAGTAATGACCCCGTGACA
Found at i:2019741 original size:21 final size:21
Alignment explanation
Indices: 2019717--2019760 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
2019707 AAGTGATTCA
2019717 TTTAAGTTATTTTAGTTAAAT
1 TTTAAGTTATTTTAGTTAAAT
* *
2019738 TTTAAGTTATTTTATTTTAAT
1 TTTAAGTTATTTTAGTTAAAT
2019759 TT
1 TT
2019761 ACTTTAAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTAAGTTATTTTAGTTAAAT
Found at i:2026809 original size:17 final size:17
Alignment explanation
Indices: 2026787--2026821 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
2026777 ATAATTAATT
2026787 TTTTA-TTAATTATAAAA
1 TTTTATTTAATT-TAAAA
2026804 TTTTATTTAATTTAAAA
1 TTTTATTTAATTTAAAA
2026821 T
1 T
2026822 AAAAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTATTTAATTTAAAA
Found at i:2029145 original size:20 final size:20
Alignment explanation
Indices: 2029112--2029158 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
2029102 TTAAAATATA
*
2029112 TTAATCAATTAAAACATTA-T
1 TTAATCAA-TAAAAAATTACT
*
2029132 TTAATTAATAAAAAATTACT
1 TTAATCAATAAAAAATTACT
2029152 TT-ATCAA
1 TTAATCAA
2029159 GATTTTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAATCAATAAAAAATTACT
Found at i:2052168 original size:19 final size:19
Alignment explanation
Indices: 2052144--2052180 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2052134 TAATCAAGTC
2052144 TTTATACTGTTATTTTGAA
1 TTTATACTGTTATTTTGAA
* *
2052163 TTTATATTTTTATTTTGA
1 TTTATACTGTTATTTTGA
2052181 GTTAAATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (19 bp):
TTTATACTGTTATTTTGAA
Found at i:2054319 original size:1 final size:1
Alignment explanation
Indices: 2054313--2054339 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
2054303 GGATGATCCT
2054313 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
2054340 GTAAACTCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2056026 original size:15 final size:15
Alignment explanation
Indices: 2056002--2056033 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2055992 CAGCTTCTAA
*
2056002 TAAAATATTAATATT
1 TAAAACATTAATATT
2056017 TAAAACATTAATATT
1 TAAAACATTAATATT
2056032 TA
1 TA
2056034 CATTATCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAAACATTAATATT
Found at i:2056128 original size:24 final size:23
Alignment explanation
Indices: 2056081--2056140 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 23
2056071 TATTAATACT
2056081 TAAAAAATAAAATAAAATAAAAA
1 TAAAAAATAAAATAAAATAAAAA
* **
2056104 TAAAAAATCATAATAAAATTTAAA
1 TAAAAAAT-AAAATAAAATAAAAA
*
2056128 TTAAAAATAAAAT
1 TAAAAAATAAAAT
2056141 TTTAATAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 12 0.39
24 19 0.61
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
TAAAAAATAAAATAAAATAAAAA
Found at i:2056146 original size:118 final size:119
Alignment explanation
Indices: 2056017--2056272 Score: 331
Period size: 118 Copynumber: 2.1 Consensus size: 119
2056007 TATTAATATT
* * *
2056017 TAAAACATTAATATTTACATTATCAATTATTAATA-TTCAAAGTAAATTATAAATTATTAATACT
1 TAAAATATTAATATTTA-ATTATCAATTAGTAATATTTCAAA-TAAATGATAAATTATTAATA-T
2056081 TAAAAAATAAAAT-A-AAA-TAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
63 TAAAAAATAAAATAATAAATTAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
* * *
2056135 TAAAATTTTAATAATTTAATTATCAATTAGTAATATTTTAAATAAATGATAAATTATTAATATTT
1 TAAAATATTAAT-ATTTAATTATCAATTAGTAATATTTCAAATAAATGATAAATTATTAATATTA
* * * *
2056200 AAAAATAAAATGAAATAAATTAAAAATAAATAGTCATAATAATATTTAAATTATAAA
65 AAAAATAAAAT--AATAAATTAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
*
2056257 TAAAATATTCATATTT
1 TAAAATATTAATATTT
2056273 TAAAATGTTA
Statistics
Matches: 119, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
117 13 0.11
118 45 0.38
119 10 0.08
120 1 0.01
121 7 0.06
122 43 0.36
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (119 bp):
TAAAATATTAATATTTAATTATCAATTAGTAATATTTCAAATAAATGATAAATTATTAATATTAA
AAAATAAAATAATAAATTAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
Found at i:2056210 original size:22 final size:22
Alignment explanation
Indices: 2056128--2056210 Score: 62
Period size: 22 Copynumber: 3.6 Consensus size: 22
2056118 AAAATTTAAA
2056128 TTAAAAATAAAATT-TTAATAAT
1 TTAAAAATAAAATTATTAAT-AT
** * *
2056150 TTAATTAT-CAATTAGTAATATT
1 TTAAAAATAAAATTATTAATA-T
2056172 TTAAATAAATGATAAATTATTAATAT
1 TT-AA-AAAT-A-AAATTATTAATAT
2056198 TTAAAAATAAAAT
1 TTAAAAATAAAAT
2056211 GAAATAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
21 5 0.11
22 17 0.37
23 3 0.07
24 6 0.13
25 2 0.04
26 3 0.07
27 10 0.22
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (22 bp):
TTAAAAATAAAATTATTAATAT
Found at i:2056215 original size:27 final size:26
Alignment explanation
Indices: 2056159--2056214 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 26
2056149 TTTAATTATC
*
2056159 AATTAGTAATATTTTAAATAAATGATA
1 AATTAGTAATATTTAAAATAAATGA-A
*
2056186 AATTATTAATATTTAAAAATAAAATGAA
1 AATTAGTAATATTT-AAAAT-AAATGAA
2056214 A
1 A
2056215 TAAATTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.52
28 6 0.24
29 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (26 bp):
AATTAGTAATATTTAAAATAAATGAA
Found at i:2056299 original size:122 final size:116
Alignment explanation
Indices: 2056017--2056332 Score: 289
Period size: 122 Copynumber: 2.6 Consensus size: 116
2056007 TATTAATATT
* * * * *
2056017 TAAAACATTAAT-ATTTACATTATCAATTATTAATATTCA-AAGTAAATTATAAATTATTAATAC
1 TAAAATATTAATAATTTA-AATATCAATGAGTAATATT-ATAAATAAA-TATAAATTATTAATA-
*
2056080 TTAAAAAATAAAATAAAATAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
62 TTTAAAAATAAAATAAAATAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
* * * *
2056135 TAAAATTTTAATAATTTAATTATCAATTAGTAATATTTTAAATAAATGATAAATTATTAATATTT
1 TAAAATATTAATAATTTAAATATCAATGAGTAATATTATAAATAAAT-ATAAATTATTAATATTT
* * * *
2056200 AAAAATAAAATGAAATAAATTAAAAATAAATAGTCATAATAATATTTAAATTATAAA
65 AAAAATAAAAT---A-AAA-TAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
* * * * *
2056257 TAAAATATTCATATTTTAAAATGTTAATGATTAA-ATTATAAATAAAATATTAACAATTATTAAT
1 TAAAATATTAATAATTT-AAATATCAATGAGTAATATTATAAAT-AAATA-T-A-AATTATTAAT
*
2056321 ATTT-TAAATAAA
61 ATTTAAAAATAAA
2056333 TGATCAATTA
Statistics
Matches: 165, Mismatches: 20, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
117 14 0.08
118 48 0.29
119 5 0.03
120 1 0.01
121 3 0.02
122 56 0.34
123 16 0.10
124 8 0.05
125 14 0.08
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (116 bp):
TAAAATATTAATAATTTAAATATCAATGAGTAATATTATAAATAAATATAAATTATTAATATTTA
AAAATAAAATAAAATAAAAATAAAAAATCATAATAAAATTTAAATTAAAAA
Found at i:2056486 original size:27 final size:27
Alignment explanation
Indices: 2056429--2056570 Score: 122
Period size: 27 Copynumber: 5.3 Consensus size: 27
2056419 AAAATAATAA
*
2056429 TTAAATTATAA-ATAAATTATTAATA-T
1 TTAAA-TATAATATAAAATATTAATATT
2056455 TT-AA-AT--TATAAAATATTAATATT
1 TTAAATATAATATAAAATATTAATATT
*
2056478 TTAAATA-AATTATAAATTATTAATATT
1 TTAAATATAA-TATAAAATATTAATATT
* *
2056505 TTAAATATAAAATAAAACCA-TAATAATAT
1 TTAAATATAATATAAAA-TATTAAT-AT-T
2056534 TTAAATTATAA-ATAAAATATTAATATT
1 TTAAA-TATAATATAAAATATTAATATT
2056561 TTAAAATATA
1 TT-AAATATA
2056571 GTGACTAAAT
Statistics
Matches: 96, Mismatches: 6, Indels: 27
0.74 0.05 0.21
Matches are distributed among these distances:
22 13 0.14
23 5 0.05
24 2 0.02
25 3 0.03
26 2 0.02
27 39 0.41
28 11 0.11
29 16 0.17
30 5 0.05
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (27 bp):
TTAAATATAATATAAAATATTAATATT
Found at i:2056512 original size:42 final size:41
Alignment explanation
Indices: 2056378--2056494 Score: 110
Period size: 41 Copynumber: 2.8 Consensus size: 41
2056368 AAAATTAATC
** * * **
2056378 ATAATAATATTTAAATGGTAAATAAAATATTAATATTTTAAAAA
1 ATAA-AATA-TTAAATTATAAATAAATTATAAATA-TTTAAATT
* *
2056422 ATAATA-ATTAAATTATAAATAAATTATTAATATTTAAATT
1 ATAAAATATTAAATTATAAATAAATTATAAATATTTAAATT
*
2056462 ATAAAATATTAATATTTTAAATAAATTATAAAT
1 ATAAAATATTAA-ATTATAAATAAATTATAAAT
2056495 TATTAATATT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
40 11 0.18
41 27 0.44
42 19 0.31
43 1 0.02
44 4 0.06
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (41 bp):
ATAAAATATTAAATTATAAATAAATTATAAATATTTAAATT
Found at i:2056615 original size:33 final size:33
Alignment explanation
Indices: 2056578--2056684 Score: 116
Period size: 33 Copynumber: 3.3 Consensus size: 33
2056568 ATAGTGACTA
2056578 AATTATAAATAAAATATTAATATATAAATTATC
1 AATTATAAATAAAATATTAATATATAAATTATC
* * * *
2056611 AATTAT---TAATATTTTAAAATATAGTGATTA--
1 AATTATAAATAAAATATTAATATATA--AATTATC
2056641 AATTATAAATAAAATATTAATATATAAATTATC
1 AATTATAAATAAAATATTAATATATAAATTATC
*
2056674 AATTATTAATA
1 AATTATAAATA
2056685 TTTTAAATGA
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
30 20 0.34
31 4 0.07
32 4 0.07
33 30 0.52
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (33 bp):
AATTATAAATAAAATATTAATATATAAATTATC
Found at i:2056627 original size:63 final size:63
Alignment explanation
Indices: 2056551--2056691 Score: 273
Period size: 63 Copynumber: 2.2 Consensus size: 63
2056541 ATAAATAAAA
2056551 TATTAATATTTTAAAATATAGTGACTAAATTATAAATAAAATATTAATATATAAATTATCAAT
1 TATTAATATTTTAAAATATAGTGACTAAATTATAAATAAAATATTAATATATAAATTATCAAT
*
2056614 TATTAATATTTTAAAATATAGTGATTAAATTATAAATAAAATATTAATATATAAATTATCAAT
1 TATTAATATTTTAAAATATAGTGACTAAATTATAAATAAAATATTAATATATAAATTATCAAT
2056677 TATTAATATTTTAAA
1 TATTAATATTTTAAA
2056692 TGAATTATCA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 77 1.00
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (63 bp):
TATTAATATTTTAAAATATAGTGACTAAATTATAAATAAAATATTAATATATAAATTATCAAT
Found at i:2056645 original size:30 final size:30
Alignment explanation
Indices: 2056546--2056651 Score: 90
Period size: 30 Copynumber: 3.4 Consensus size: 30
2056536 AAATTATAAA
* *
2056546 TAAAATATTAATATTTTAAAATATAGTGAC
1 TAAATTATTAATATTTTAAAATATAGTGAT
* * * *
2056576 TAAATTATAAATAAAATATTAATATATA--AAT
1 TAAATTAT---TAATATTTTAAAATATAGTGAT
2056607 TATCAATTATTAATATTTTAAAATATAGTGAT
1 TA--AATTATTAATATTTTAAAATATAGTGAT
*
2056639 TAAATTATAAATA
1 TAAATTATTAATA
2056652 AAATATTAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
30 31 0.53
31 3 0.05
32 4 0.07
33 20 0.34
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (30 bp):
TAAATTATTAATATTTTAAAATATAGTGAT
Found at i:2056692 original size:146 final size:144
Alignment explanation
Indices: 2056377--2056657 Score: 370
Period size: 146 Copynumber: 1.9 Consensus size: 144
2056367 AAAAATTAAT
** *
2056377 CATAATAATATTTAAATGGTAAATAAAATATTAATATTTTAAAAAATAATAATTAAATTATAAAT
1 CATAAT-ATATTTAAATTATAAATAAAATATTAATATTTTAAAAAATAATAACTAAATTATAAAT
* * * *
2056442 AAATTATTAATATTTAAATTATAAAATATTAATATTTTAAATAAATTATAAATTATTAATATTTT
65 AAAATATTAATATATAAATTATAAAATATTAATATTTTAAATAAATGATAAATTATTAATA-TTA
2056507 AAATATAAAATAAAAC
129 AAATATAAAATAAAAC
* * *
2056523 CATAATAATATTTAAATTATAAATAAAATATTAATATTTTAAAATATAGTGACTAAATTATAAAT
1 CATAAT-ATATTTAAATTATAAATAAAATATTAATATTTTAAAAAATAATAACTAAATTATAAAT
* * *
2056588 AAAATATTAATATATAAATTATCAATTATTAATATTTTAAAATATAGTGATTAAATTA-TAA-A-
65 AAAATATTAATATATAAATTATAAAATATTAATATTTT-AAATA-AATGA-TAAATTATTAATAT
2056650 TAAAATAT
127 TAAAATAT
2056658 TAATATATAA
Statistics
Matches: 119, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
145 7 0.06
146 93 0.78
147 6 0.05
148 6 0.05
149 7 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (144 bp):
CATAATATATTTAAATTATAAATAAAATATTAATATTTTAAAAAATAATAACTAAATTATAAATA
AAATATTAATATATAAATTATAAAATATTAATATTTTAAATAAATGATAAATTATTAATATTAAA
ATATAAAATAAAAC
Found at i:2058501 original size:59 final size:59
Alignment explanation
Indices: 2058409--2058527 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 59
2058399 CAGACAGAAT
* * *
2058409 GCCGCTCAGTGTGCATACAATAATCCTAGATAGTGGGGATTAAACCCTATATACTTTGA
1 GCCGCTCAGTGTGCACACAATAATCCAAGATAGTAGGGATTAAACCCTATATACTTTGA
* *
2058468 GCCGCTCTA-TGTGCACACAATAATCCAAGATAGTAGGGATTAAACCCTATCTATTTTGA
1 GCCGCTC-AGTGTGCACACAATAATCCAAGATAGTAGGGATTAAACCCTATATACTTTGA
2058527 G
1 G
2058528 TTAGGATGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 53 0.98
60 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (59 bp):
GCCGCTCAGTGTGCACACAATAATCCAAGATAGTAGGGATTAAACCCTATATACTTTGA
Found at i:2060339 original size:68 final size:68
Alignment explanation
Indices: 2060242--2060374 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 68
2060232 GATGAACATG
*
2060242 ATAAGATTATTTATATGATGTAAATTTCATATACCATATGAGATGATTAAGTATGCATGATGAAT
1 ATAAGATTATATATATGATGTAAATTTCATATACCATATGAGATGATTAAGTATGCATGATGAAT
2060307 ACT
66 ACT
* *
2060310 ATAAGATTGTATATATGATGTAAATTTCATATACCATATGAGGTGATTAAGTATGCATGATGAAT
1 ATAAGATTATATATATGATGTAAATTTCATATACCATATGAGATGATTAAGTATGCATGATGAAT
2060375 GTATTAATAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.38
Consensus pattern (68 bp):
ATAAGATTATATATATGATGTAAATTTCATATACCATATGAGATGATTAAGTATGCATGATGAAT
ACT
Found at i:2063500 original size:28 final size:28
Alignment explanation
Indices: 2063438--2063494 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
2063428 AAACAGTGTA
2063438 TATTTATACATGGCATATAACAACTTAG
1 TATTTATACATGGCATATAACAACTTAG
2063466 TATTTATACATGGCATATAACAACTTAG
1 TATTTATACATGGCATATAACAACTTAG
2063494 T
1 T
2063495 CATTATGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (28 bp):
TATTTATACATGGCATATAACAACTTAG
Found at i:2063930 original size:31 final size:31
Alignment explanation
Indices: 2063895--2063960 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
2063885 AGGGATGGTG
*
2063895 TGTAGCAACAATTGCCTACTGAGGCAAAGCA
1 TGTAGCAACAATTGCCTACTAAGGCAAAGCA
**
2063926 TGTAGCAACAATTGCCTACTAAGGCATGGCA
1 TGTAGCAACAATTGCCTACTAAGGCAAAGCA
2063957 TGTA
1 TGTA
2063961 ACAATAGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (31 bp):
TGTAGCAACAATTGCCTACTAAGGCAAAGCA
Found at i:2064039 original size:119 final size:119
Alignment explanation
Indices: 2063889--2064192 Score: 374
Period size: 119 Copynumber: 2.6 Consensus size: 119
2063879 ATACCAAGGG
* **
2063889 ATGGTGTGTAGCAACAATTGCCTACTGAGGCAAAGCATGTAGCAACAATTGCCTACTAAGGCATG
1 ATGGTGTGTAGCAACAATTGCCTACTAAGGCATGGCATGTAGCAACAATTGCCTACTAAGGCATG
* * ** * *
2063954 GCATGTAACAATAGATGCTTACTACTCATAGTGTGTAACAACACATATATGGGC
66 GCATGTAACAATAGATGCCTACTACCCATAGCATGAAACAACACATATATAGGC
* * * * *** **
2064008 ATGGCGTGTAGTAACAATTGCTTACTAAGGCATGGCGTGTAGCAACAATTATGTACTAACACATG
1 ATGGTGTGTAGCAACAATTGCCTACTAAGGCATGGCATGTAGCAACAATTGCCTACTAAGGCATG
* * * *
2064073 GCATGTAACAATGGATGCCTACTACCCATGGCATGAAACAACACATTTATAGGT
66 GCATGTAACAATAGATGCCTACTACCCATAGCATGAAACAACACATATATAGGC
* * * *
2064127 ATGATGTGTAGCAATAATTGCCTACTCAGGCATGGCATCTAGCAACAATTGCCTACTAAGGCATG
1 ATGGTGTGTAGCAACAATTGCCTACTAAGGCATGGCATGTAGCAACAATTGCCTACTAAGGCATG
2064192 G
66 G
2064193 TGTGTAGTAC
Statistics
Matches: 150, Mismatches: 35, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
119 150 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (119 bp):
ATGGTGTGTAGCAACAATTGCCTACTAAGGCATGGCATGTAGCAACAATTGCCTACTAAGGCATG
GCATGTAACAATAGATGCCTACTACCCATAGCATGAAACAACACATATATAGGC
Found at i:2064065 original size:31 final size:31
Alignment explanation
Indices: 2064005--2064066 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
2063995 CACATATATG
* *
2064005 GGCATGGCGTGTAGTAACAATTGCTTACTAA
1 GGCATGGCGTGTAGCAACAATTGATTACTAA
2064036 GGCATGGCGTGTAGCAACAATT-ATGTACTAA
1 GGCATGGCGTGTAGCAACAATTGAT-TACTAA
2064067 CACATGGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.04
31 27 0.96
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (31 bp):
GGCATGGCGTGTAGCAACAATTGATTACTAA
Found at i:2064073 original size:31 final size:31
Alignment explanation
Indices: 2064007--2064079 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
2063997 CATATATGGG
* * **
2064007 CATGGCGTGTAGTAACAATTGCTTACTAAGG
1 CATGGCGTGTAGCAACAATTGATTACTAACA
2064038 CATGGCGTGTAGCAACAATT-ATGTACTAACA
1 CATGGCGTGTAGCAACAATTGAT-TACTAACA
*
2064069 CATGGCATGTA
1 CATGGCGTGTA
2064080 ACAATGGATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (31 bp):
CATGGCGTGTAGCAACAATTGATTACTAACA
Found at i:2068587 original size:180 final size:174
Alignment explanation
Indices: 2068351--2068673 Score: 434
Period size: 180 Copynumber: 1.8 Consensus size: 174
2068341 CCTTTCTCTT
* * * * *
2068351 TTTTCCCTTTTTATTTCTTACTGCTTTTTTCCGTATTTTTTCTTTTATAAATCTTTTGGGGGTTT
1 TTTTCCCTTTTTATTTCTTACTACTTTTTTCCATATTTTTTCATTTATAAATCTTTTGGAGGCTT
* *
2068416 ATCATTCATCAAGTTGTAAAAACCATTTCTATTATTTTCATTTCTTGTAAATCAATCAAGCAATT
66 ATCATTCATCAAATTGTAAAAACCATTTCTATTA---T--TTT-TT-T-AATCAATCAAACAATT
*
2068481 ATCATTCATCAATCTCTTTTTTTGGTGAATCAATCGTTGTTAGTTAGACTTG
123 ATCATTCATCAATCTATTTTTTTGGTGAATCAATCGTTGTTAGTTAGACTTG
* * * **
2068533 TTTTCCCTTTTT-TTTTTTGCTACTTTTTTCCAT-TTTTTTCATTTATATATCTTTTTTAGGCTT
1 TTTTCCCTTTTTATTTCTTACTACTTTTTTCCATATTTTTTCATTTATAAATCTTTTGGAGGCTT
*
2068596 ATCATTCATCAAATTGTAAAAACCATTTCTCTTATTTTTTTAATCAATCAAACAATTATCATTCA
66 ATCATTCATCAAATTGTAAAAACCATTTCTATTATTTTTTTAATCAATCAAACAATTATCATTCA
2068661 TCAATCTATTTTT
131 TCAATCTATTTTT
2068674 CATTAATCGA
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
172 35 0.28
173 1 0.01
174 2 0.02
175 3 0.02
177 1 0.01
180 56 0.44
181 17 0.13
182 12 0.09
ACGTcount: A:0.24, C:0.16, G:0.07, T:0.53
Consensus pattern (174 bp):
TTTTCCCTTTTTATTTCTTACTACTTTTTTCCATATTTTTTCATTTATAAATCTTTTGGAGGCTT
ATCATTCATCAAATTGTAAAAACCATTTCTATTATTTTTTTAATCAATCAAACAATTATCATTCA
TCAATCTATTTTTTTGGTGAATCAATCGTTGTTAGTTAGACTTG
Found at i:2072688 original size:22 final size:22
Alignment explanation
Indices: 2072657--2072698 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
2072647 TTATTCCAAG
2072657 AATATAAATTTAAATTTTTTTTC
1 AATATAAA-TTAAATTTTTTTTC
*
2072680 AATA-AAATTAGATTTTTTT
1 AATATAAATTAAATTTTTTT
2072699 ACTTAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 3 0.17
23 4 0.22
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
AATATAAATTAAATTTTTTTTC
Found at i:2073048 original size:249 final size:247
Alignment explanation
Indices: 2072590--2073130 Score: 744
Period size: 249 Copynumber: 2.2 Consensus size: 247
2072580 NNNNNNNNNN
* * *
2072590 ATTTTTATCTTTATTATTTTTATTTAAAAATTAAAATTTGTATATTGTTAAATATTTTTATTCCA
1 ATTTTTATCTTTATTATTTTTATTTAAAAATTAAAATTTGTATATCGTTAAACAATTTTATTCCA
* *
2072655 AGAATATAAATTTAAATTTTTTTTCAATAAAATTAGATTTTTTTACTTAATTGACTTATTATATT
66 AGAATATAAATATAAATTTTTTTTCAATAAAATTAGATTTTTTTACTTAATTGACTTATTACATT
* * * ** * *
2072720 AACTCTCACATATTTATTTTAAGATTTAAAATTTTATTATTTTATCTTTATAAGTTTTTACGTCA
131 AACTCTCACACATTTATGTTAAGAATTAAAATTTTATTATTCCACCTTTATAAGCTTTTACGTCA
* * * * * * *
2072785 ATTCTTATAATTTTATGTCAATATTTTTTTATGTCAATTTTAAACTATAATT
196 ATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATC
* *
2072837 ATTTTTATCCTTATTATTCTTTATTTAAAAAGTAAAATTTGTATATCGTTAAACAATTTTAGTTC
1 ATTTTTATCTTTATTATT-TTTATTTAAAAATTAAAATTTGTATATCGTTAAACAATTTTA-TTC
* * * * *
2072902 TAA-AATATAAATATAAATATTTTTTTCACTAAAATTAGATTTTTTTACTTAATTGATTTGTTGC
64 CAAGAATATAAATATAAAT-TTTTTTTCAATAAAATTAGATTTTTTTACTTAATTGACTTATTAC
* * *
2072966 GTTAACTTTCACACGTTTATGTTAAGAATTAAAA-TTTAGTTATTCCACCTTTATAAGCTTTTAC
128 ATTAACTCTCACACATTTATGTTAAGAATTAAAATTTTA-TTATTCCACCTTTATAAGCTTTTAC
* *
2073030 GTTAATTCTTACAATTTTACGTTAAGACTTATCTATGTCAATTTTAAACTATAATC
192 GTCAATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATC
*
2073086 ATTTTTATCTTTATTATTTTTATTTAAAAATTAAAATTTATATAT
1 ATTTTTATCTTTATTATTTTTATTTAAAAATTAAAATTTGTATAT
2073131 TATTACATAC
Statistics
Matches: 256, Mismatches: 34, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
247 17 0.07
248 81 0.32
249 158 0.62
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.52
Consensus pattern (247 bp):
ATTTTTATCTTTATTATTTTTATTTAAAAATTAAAATTTGTATATCGTTAAACAATTTTATTCCA
AGAATATAAATATAAATTTTTTTTCAATAAAATTAGATTTTTTTACTTAATTGACTTATTACATT
AACTCTCACACATTTATGTTAAGAATTAAAATTTTATTATTCCACCTTTATAAGCTTTTACGTCA
ATTCTTACAATTTTACGTCAAGACTTATCTATGTCAATTTTAAACTATAATC
Found at i:2074130 original size:20 final size:19
Alignment explanation
Indices: 2074107--2074152 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
2074097 AATTAATTTA
*
2074107 TTACGTTAACTTTTAAATAT
1 TTACGTTAACATTTAAA-AT
*
2074127 TTACGTTAAGATTTAAAAT
1 TTACGTTAACATTTAAAAT
2074146 TTA-GTTA
1 TTACGTTA
2074153 TTTCACCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 5 0.21
20 15 0.62
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (19 bp):
TTACGTTAACATTTAAAAT
Found at i:2079237 original size:13 final size:13
Alignment explanation
Indices: 2079219--2079245 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2079209 AAATCACAGC
2079219 ACCTAATTTAAAT
1 ACCTAATTTAAAT
2079232 ACCTAATTTAAAT
1 ACCTAATTTAAAT
2079245 A
1 A
2079246 TAAAAGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
ACCTAATTTAAAT
Found at i:2080787 original size:2 final size:2
Alignment explanation
Indices: 2080780--2080814 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
2080770 CTCCTAAAAT
* *
2080780 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2080815 GGGGAAGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2087504 original size:2 final size:2
Alignment explanation
Indices: 2087497--2087527 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2087487 AGTTATTCTA
*
2087497 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2087528 GATAAGTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:2090659 original size:14 final size:14
Alignment explanation
Indices: 2090640--2090666 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2090630 TATTAGTTTA
2090640 AGTTTTAGTTAATT
1 AGTTTTAGTTAATT
2090654 AGTTTTAGTTAAT
1 AGTTTTAGTTAAT
2090667 CAAATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (14 bp):
AGTTTTAGTTAATT
Found at i:2097235 original size:2 final size:2
Alignment explanation
Indices: 2097228--2097254 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2097218 GTTTTGCAAC
2097228 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2097255 ATGTTTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2101068 original size:6 final size:6
Alignment explanation
Indices: 2101057--2101119 Score: 63
Period size: 6 Copynumber: 10.5 Consensus size: 6
2101047 AGGACGAAAG
** * * *
2101057 ATATAT ATATAT ATATAT ATATGC ATATAT GTATAT GTATTT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* *
2101105 GTATAT GTATAT ATA
1 ATATAT ATATAT ATA
2101120 CCACTTTGTG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (6 bp):
ATATAT
Found at i:2101070 original size:8 final size:8
Alignment explanation
Indices: 2101057--2101119 Score: 63
Period size: 8 Copynumber: 7.9 Consensus size: 8
2101047 AGGACGAAAG
2101057 ATATATAT
1 ATATATAT
2101065 ATATATAT
1 ATATATAT
**
2101073 ATATATGC
1 ATATATAT
*
2101081 ATATATGT
1 ATATATAT
*
2101089 ATATGTAT
1 ATATATAT
*
2101097 TTATATAT
1 ATATATAT
* *
2101105 GTATATGT
1 ATATATAT
2101113 ATATATA
1 ATATATA
2101120 CCACTTTGTG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 44 1.00
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (8 bp):
ATATATAT
Found at i:2101102 original size:18 final size:18
Alignment explanation
Indices: 2101057--2101119 Score: 81
Period size: 18 Copynumber: 3.4 Consensus size: 18
2101047 AGGACGAAAG
* *
2101057 ATATATATATATATATAT
1 ATATATATATGTATATGT
2101075 ATATGCATATATGTATATGT
1 ATAT--ATATATGTATATGT
*
2101095 ATTTATATATGTATATGT
1 ATATATATATGTATATGT
2101113 ATATATA
1 ATATATA
2101120 CCACTTTGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 24 0.62
20 15 0.38
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (18 bp):
ATATATATATGTATATGT
Found at i:2102760 original size:20 final size:23
Alignment explanation
Indices: 2102732--2102782 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 23
2102722 CCAATTTCCC
*
2102732 CTGTTTCTCTCTAATT-TATT-T
1 CTGTCTCTCTCTAATTCTATTAT
*
2102753 -TGTCTCTCTCTGATTCTATTAT
1 CTGTCTCTCTCTAATTCTATTAT
2102775 CTGTCTCT
1 CTGTCTCT
2102783 TTTCCCCTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 13 0.52
21 4 0.16
22 1 0.04
23 7 0.28
ACGTcount: A:0.12, C:0.24, G:0.08, T:0.57
Consensus pattern (23 bp):
CTGTCTCTCTCTAATTCTATTAT
Found at i:2116435 original size:47 final size:47
Alignment explanation
Indices: 2116345--2116436 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
2116335 AAATAGAAGT
* * *
2116345 GTTTTCAACAAACACAATTGTTGAAACATACTAATTAATTGTTTAGC
1 GTTTTCAACAAACACAACTATTGAAACATACTAATTAAGTGTTTAGC
* * *
2116392 GTTTTCAACAGACACAACTATTGGAAA-ATACTAGTTCAGTGTTTA
1 GTTTTCAACAAACACAACTATT-GAAACATACTAATTAAGTGTTTA
2116437 TAAAAGAGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 34 0.89
48 4 0.11
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (47 bp):
GTTTTCAACAAACACAACTATTGAAACATACTAATTAAGTGTTTAGC
Found at i:2120932 original size:25 final size:25
Alignment explanation
Indices: 2120899--2120946 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
2120889 AATCATATGC
*
2120899 CTTTATGTAGATGGTTTGTTGATAT
1 CTTTATGTAGATGATTTGTTGATAT
2120924 CTTTATGTAGATGATTTGTTGAT
1 CTTTATGTAGATGATTTGTTGAT
2120947 CTTTGGTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.21, C:0.04, G:0.23, T:0.52
Consensus pattern (25 bp):
CTTTATGTAGATGATTTGTTGATAT
Found at i:2125585 original size:16 final size:16
Alignment explanation
Indices: 2125544--2125587 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
2125534 CCTAAAAATG
*
2125544 TTTGGAGAG-AATTTT
1 TTTGGAGAGAAATTCT
2125559 TTTGGA-AGAAATTCT
1 TTTGGAGAGAAATTCT
*
2125574 TTTGGAGGGAAATT
1 TTTGGAGAGAAATT
2125588 GACTATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 2 0.08
15 17 0.68
16 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.27, T:0.41
Consensus pattern (16 bp):
TTTGGAGAGAAATTCT
Found at i:2127107 original size:21 final size:22
Alignment explanation
Indices: 2127075--2127121 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
2127065 TATAAGTAAT
2127075 TTTTAAACTTATCT-A-TTTTA
1 TTTTAAACTTATCTAATTTTTA
* *
2127095 TTTTAAATGTTATTTAATTTTTA
1 TTTTAAA-CTTATCTAATTTTTA
2127118 TTTT
1 TTTT
2127122 TATTCTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 1 0.05
23 9 0.41
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTAAACTTATCTAATTTTTA
Found at i:2128161 original size:457 final size:456
Alignment explanation
Indices: 2127338--2128161 Score: 999
Period size: 457 Copynumber: 1.8 Consensus size: 456
2127328 TAATTTCAAA
* *
2127338 ATAATTATTTTTATCATTATGGATATTTATTTATAACTTAAAATTTGTAAATCGTTAAATACTTC
1 ATAATTATTTTTATCATTATGGATATTCATTTATAACTTAAAATTTATAAATCGTTAAATACTTC
* * * *
2127403 TAGCTTGATAATATACATTTAAATGTTTAATTTTCACAAAAATTATATTTATCTTGACTTAATTG
66 TACCTTGATAATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATCTTGACTTAATTG
** *
2127468 ACTTACTACATTAAATCTTACACATTTACGTCAATATTTTTTAATACTTGTTACACCTTTATAAT
131 ACTTACTACATTAAATCTTACACATTTACGTCAATATTTTACAATACTTGTTACACATTTATAAT
* * * **
2127533 TTTTATGCTAATTCTTATATGTTTACGCCAAGCTTTTTCAGTTGTTAATTTTCACTATAATTATT
196 TTTTATGCTAATTCTTATAGGTTTACGCAAAGCTTTTTCAGCTACTAATTTTCACTATAATTATT
* ** * *
2127598 TTTATCTTTAATATTATTTATTTCTAAATTAAAATTCATAAACTGTTAAAATTTATAGCTCAATA
261 TTTATCTCTAATATTATCCATTTATAAATTAAAAGTCATAAACTGTTAAAATTTATAGCTCAATA
* * * *
2127663 ATATATATTCAAATATTACATTAAATCTCATACATTTATATTAATATTTTAACAATTCTTGTCTC
326 ATATAAATTCAAATATTAAATT--ATCTCATAAAGTTATATTAATATTTTAACAATTCTTGTCTC
2127728 ACTTGTATATTTTTTTATGTTAATTCTTACAGTTTTACATCAAAGCTTGTGAGTCGCTGATTTTC
389 ACTTGTATATTTTTTTATGTTAATTCTTACAGTTTTACATCAAAGCTTGTGAGTCGCTGATTTTC
2127793 ACT
454 ACT
* * *
2127796 ATAATTATTTTTATCCTTAT-TATTATTCATTTATAA-TTAAAATTTATAAATCTTTAAATACTT
1 ATAATTATTTTTATCATTATGGA-TATTCATTTATAACTTAAAATTTATAAATCGTTAAATACTT
* *
2127859 TTACCTCT-ATAATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATTTTGACTTAAT
65 CTACCT-TGATAATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATCTTGACTTAAT
** * * ** *
2127923 TGACTTGTTACATTATATTTTACACATTTACGTCAATATTTTAACAATTTTTTGTT-CTATATTT
129 TGACTTACTACATTAAATCTTACACATTTACGTCAATATTTT-ACAA-TACTTGTTAC-ACATTT
* ** *
2127987 ATAATTTTTTACT-TTAATTCTTATAGGTTTACTTTAAAG-TTTTTTAGCTACTAATTTTCACTA
191 ATAA-TTTTTA-TGCTAATTCTTATAGGTTTAC-GCAAAGCTTTTTCAGCTACTAATTTTCACTA
* * *
2128050 TAATTATTTTTATC-CTCATCATTATCCCTTTAT-AATTAAAACGT-GTAAA-TCGTTAAATACT
253 TAATTATTTTTATCTCTAAT-ATTATCCATTTATAAATTAAAA-GTCATAAACT-GTTAAA-A-T
** * *
2128111 TT-TAGCTTGATAATATAAATTTAAATATTAAATT-TTTACA-AAAGTTATATT
313 TTATAGCTCAATAATATAAATTCAAATATTAAATTATCT-CATAAAGTTATATT
2128162 TATTTTGACT
Statistics
Matches: 306, Mismatches: 46, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
457 131 0.43
458 38 0.12
459 35 0.11
460 95 0.31
461 7 0.02
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.49
Consensus pattern (456 bp):
ATAATTATTTTTATCATTATGGATATTCATTTATAACTTAAAATTTATAAATCGTTAAATACTTC
TACCTTGATAATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATCTTGACTTAATTG
ACTTACTACATTAAATCTTACACATTTACGTCAATATTTTACAATACTTGTTACACATTTATAAT
TTTTATGCTAATTCTTATAGGTTTACGCAAAGCTTTTTCAGCTACTAATTTTCACTATAATTATT
TTTATCTCTAATATTATCCATTTATAAATTAAAAGTCATAAACTGTTAAAATTTATAGCTCAATA
ATATAAATTCAAATATTAAATTATCTCATAAAGTTATATTAATATTTTAACAATTCTTGTCTCAC
TTGTATATTTTTTTATGTTAATTCTTACAGTTTTACATCAAAGCTTGTGAGTCGCTGATTTTCAC
T
Found at i:2128599 original size:252 final size:252
Alignment explanation
Indices: 2127678--2129141 Score: 1532
Period size: 252 Copynumber: 5.8 Consensus size: 252
2127668 TATTCAAATA
* * ** * * *
2127678 TTACATTAAATCTCATACATTTATATTAATATTTTAACAATTCTTG-TCTCACTTGTATATTTTT
1 TTACATTAAATCTTACACATTTACGTCAATATTTTAACAATTCTTGTTC-CACTTTTATAATTTT
* * * * * * * ** *
2127742 TTATGTTAATTCTTACAGTTTTACATCAAAGCTTGTGAGTCGCTGATTTTCACTATAATTATTTT
65 TTATATTAATTCTTACAGGTTTACATTAAAGTTTTTCAAT-TATAATTTTCACTATAATTATTTT
* *
2127807 TATCCTTATTATTATTCATTTAT-AATTAAAATTTATAAATCT-TTAAATACTTTTACCTCTATA
129 TATCCTTATTATTATTCATTTATAAATTAAAATTTATAAA-CTGTTAAATACTTTTAGCTCGATA
* * *
2127870 ATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
193 ATATAAATTTAAATATTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
* * * *
2127930 TTACATTATATTTTACACATTTACGTCAATATTTTAACAATTTTTTGTTCTA-TATTTATAATTT
1 TTACATTAAATCTTACACATTTACGTCAATATTTTAACAA-TTCTTGTTCCACT-TTTATAATTT
* * * **
2127994 TTTACT-TTAATTCTTATAGGTTTACTTTAAAGTTTTTTAGCTACTAATTTTCACTATAATTATT
64 TTTA-TATTAATTCTTACAGGTTTACATTAAAGTTTTTCAATTA-TAATTTTCACTATAATTATT
* * * * ** * *
2128058 TTTATCCTCATCATTATCCCTTTAT-AATTAAAACGTGTAAA-TCGTTAAATACTTTTAGCTTGA
127 TTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAACT-GTTAAATACTTTTAGCTCGA
* * * *
2128121 TAATATAAATTTAAATATTAAATTTTTACAAAAGTTATATTTATTTTGACTTAATTCACTTG
191 TAATATAAATTTAAATATTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
* * * ** * *
2128183 TTACGTTAAATTTTACAAATTTATATCAATATATTAATAATTCTTGTTCCACTTTTATAATTTTT
1 TTACATTAAATCTTACACATTTACGTCAATATTTTAACAATTCTTGTTCCACTTTTATAATTTTT
** * *
2128248 TATATTAATTCTTACAGGTTTACGTCAAAAAAGTTTTAGT-AA-T-TAATTTTCATTATAATTGT
66 TATATTAATTCTTACAGGTTTA---CATTAAAGTTTT--TCAATTATAATTTTCACTATAATTAT
* * * *
2128310 TTTT-TTCTTATTATTATTCATTTATAAATTAAAATTTATAAACTATTAAATAGTTTTAGCTCAA
126 TTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTCGA
* *
2128374 TAATATAAATTTAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTAACTTG
191 TAATATAAATTTAAATATTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
* * *
2128436 TTAC-TTAAATCTTACACATTTAGGTCAATATTTTAAGAATGCTTGTTCCACTTTTATAATTTTT
1 TTACATTAAATCTTACACATTTACGTCAATATTTTAACAATTCTTGTTCCACTTTTATAATTTTT
* * * * * *
2128500 CATGTTAATTTTTACAGGTTTACATTAAGGTTTTTCAATTCATAATTTTCATTATAATTATTTTA
66 TATATTAATTCTTACAGGTTTACATTAAAGTTTTTCAATT-ATAATTTTCACTATAATTATTTTT
* * * *
2128565 ATCTTTATTATTATTC-TTCTATAAATTGAAATTTATAAACTGTTAAATATTTTTAGCTTGATAA
130 ATCCTTATTATTATTCATT-TATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTCGATAA
* * *
2128629 TATAAATTTAATTATTTAATTCTCACAAAAATTATATTCA-TTTGACTTAATTG-CTTG
194 TATAAATTTAAATATTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
* * * * ** * *
2128686 CTACATTAAATCTCATACATTTACGTCAATACTGAAACAATTCTTGTTTCACCTTTATAATTTTT
1 TTACATTAAATCTTACACATTTACGTCAATATTTTAACAATTCTTGTTCCACTTTTATAATTTTT
* * ** * * *
2128751 TCTATTAATTCTTACAAGTTTATGTCAAGGTTTTTCAATTGTTAATTTTCACTATAATTATTTTT
66 TATATTAATTCTTACAGGTTTACATTAAAGTTTTTCAATT-ATAATTTTCACTATAATTATTTTT
* * * * * * *
2128816 AACTTTATTATTATTCATTTATAAATTTAAATTTATAAAATGTTAAATAATTTTGGCTCAATAAT
130 ATCCTTATTATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTCGATAAT
* * *
2128881 ATAAACTTAAA-ATTTTAATTTTCAC-AAAATTATATTTATTTTGATTTAATTGATTTG
195 ATAAATTTAAATA-TTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
** * * * * * *
2128938 TTATGTCAAATCTCACAC-TTTCACATCAATATTTTAACAAATT-TTGTTCTACATTGATAATTT
1 TTACATTAAATCTTACACATTT-ACGTCAATATTTTAAC-AATTCTTGTTCCACTTTTATAATTT
* * *
2129001 TTTACATTAATTCTTATAGGTTTAC-TTCAAAGTTTTTCAAGTCT-TAATTTTTACTATAATTAT
64 TTTATATTAATTCTTACAGGTTTACATT-AAAGTTTTTCAA-T-TATAATTTTCACTATAATTAT
* **
2129064 TTTTATCCTTATTATTATTCCTTTATAAATTAAAATTTATAAACCATTAAATACTTTTAGCAT-G
126 TTTTATCCTTATTATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGC-TCG
2129128 ATAATATAAATTTA
190 ATAATATAAATTTA
2129142 TTTTAACTTA
Statistics
Matches: 1013, Mismatches: 166, Indels: 66
0.81 0.13 0.05
Matches are distributed among these distances:
247 1 0.00
248 2 0.00
249 10 0.01
250 20 0.02
251 231 0.23
252 411 0.41
253 321 0.32
254 5 0.00
255 10 0.01
256 1 0.00
257 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (252 bp):
TTACATTAAATCTTACACATTTACGTCAATATTTTAACAATTCTTGTTCCACTTTTATAATTTTT
TATATTAATTCTTACAGGTTTACATTAAAGTTTTTCAATTATAATTTTCACTATAATTATTTTTA
TCCTTATTATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTCGATAATA
TAAATTTAAATATTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTG
Found at i:2128877 original size:503 final size:496
Alignment explanation
Indices: 2127679--2129141 Score: 1667
Period size: 503 Copynumber: 2.9 Consensus size: 496
2127669 ATTCAAATAT
* * * *
2127679 TACATTAAATCTCATACATTTATATTAATATTTTAACAATTCTTGTCTCA-CTTGTATATTTTTT
1 TACATTAAATCTCATACATTTATATCAATA--TAAACAATTCTTGTTTCACCTT-TATAATTTTT
* * * * * *
2127743 TATGTTAATTCTTAC-AGTTTTACATCAAAGCTTGTGAGTCGCTGATTTTCACTATAATTATTTT
63 TATATTAATTCTTACAAG-TTTACGTCAAAG-TT-TTAGTAGTTAATTTTCACTATAATTATTTT
* * * *
2127807 TATCCTTATTATTATTCATTTAT-AATTAAAATTTAT-AAATCTTTAAATACTTTTACCTCTATA
125 TAT-CTTATTATTATTCATTTATAAATTAAAATTTATAAAAT-ATTAAATAATTTTAGCTCAATA
* *
2127870 ATATAAATTGAAATGTTCAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTGTTACA
188 ATATAAATTAAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTGTTAC-
* * *
2127935 TTATATTTTACACATTTACGTCAATATTTTAACAATTTTTTGTTCTA-TATTTATAATTTTTTAC
252 TTAAATCTTACACATTTACGTCAATATTTTAA-AA-ATTTTGTTCTACT-TTTATAATTTTTTA-
* *
2127999 TTTAATTCTTATAGGTTTACTTTAAAGTTTTTTAGCT-ACTAATTTTCACTATAATTATTTTTAT
313 TTTAATTCTTATAGGTTTAC-TTAAAGTTTTTCAACTCA-TAATTTTCACTATAATTATTTTTAT
* * * ** *
2128063 CCTCATCATTATCCCTTTAT-AATTAAAACGTGTAAA-TCGTTAAATACTTTTAGCTTGATAATA
376 CCTTATTATTAT-TCTTTATAAATTAAAATTTATAAACT-GTTAAATACTTTTAGCTTGATAATA
* * * * *
2128126 TAAATTTAAATATTAAATTTTTACAAAAGTTATATTTATTTTGACTTAATTCACTTGT
439 TAAATTTAAATATTAAATTCTCACAAAAATTATATTCATTTTGACTTAATTCACTTGC
* * * * * * * *
2128184 TACGTTAAATTTTACAAATTTATATCAATATATTAATAATTCTTGTTCCACTTTTATAATTTTTT
1 TACATTAAATCTCATACATTTATATCAATATA--AACAATTCTTGTTTCACCTTTATAATTTTTT
* * * *
2128249 ATATTAATTCTTACAGGTTTACGTCAAAAAAGTTTTAGTAATTAATTTTCATTATAATTGTTTTT
64 ATATTAATTCTTACAAGTTTACGTC---AAAGTTTTAGTAGTTAATTTTCACTATAATTATTTTT
* * *
2128314 TTCTTATTATTATTCATTTATAAATTAAAATTTATAAACTATTAAATAGTTTTAGCTCAATAATA
126 ATCTTATTATTATTCATTTATAAATTAAAATTTATAAAATATTAAATAATTTTAGCTCAATAATA
* *
2128379 TAAATTTAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTAACTTGTTACTTAA
191 TAAATTAAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTGTTACTTAA
* * * * *
2128444 ATCTTACACATTTAGGTCAATATTTTAAGAATGCTTGTTCCACTTTTATAATTTTTCATGTTAAT
256 ATCTTACACATTTACGTCAATATTTTAAAAAT-TTTGTTCTACTTTTATAATTTTTTAT-TTAAT
* * * * * * *
2128509 TTTTACAGGTTTACATTAAGGTTTTTCAATTCATAATTTTCATTATAATTATTTTAATCTTTATT
319 TCTTATAGGTTTAC-TTAAAGTTTTTCAACTCATAATTTTCACTATAATTATTTTTATCCTTATT
* *
2128574 ATTATTCTTCTATAAATTGAAATTTATAAACTGTTAAATATTTTTAGCTTGATAATATAAATTTA
383 ATTATTCTT-TATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTTGATAATATAAATTTA
* * *
2128639 ATTATTTAATTCTCACAAAAATTATATTCA-TTTGACTTAATT-GCTTGC
447 AATATTAAATTCTCACAAAAATTATATTCATTTTGACTTAATTCACTTGC
**
2128687 TACATTAAATCTCATACATTTACGTCAATACTGAAACAATTCTTGTTTCACCTTTATAATTTTTT
1 TACATTAAATCTCATACATTTATATCAATA-T-AAACAATTCTTGTTTCACCTTTATAATTTTTT
* * * * *
2128752 CTATTAATTCTTACAAGTTTATGTCAAGGTTTTTCAATTGTTAATTTTCACTATAATTATTTTTA
64 ATATTAATTCTTACAAGTTTACGTCAAAG-TTTT-AGTAGTTAATTTTCACTATAATTATTTTTA
* * * *
2128817 ACTTTATTATTATTCATTTATAAATTTAAATTTATAAAATGTTAAATAATTTTGGCTCAATAATA
127 TC-TTATTATTATTCATTTATAAATTAAAATTTATAAAATATTAAATAATTTTAGCTCAATAATA
* *
2128882 TAAACTTAAAAT-TTTAATTTTCAC-AAAATTATATTTATTTTGATTTAATTGATTTGTTA-TGT
191 TAAA-TTAAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTGTTACT-T
* * * * *
2128944 CAAATCTCACAC-TTTCACATCAATATTTTAACAAATTTTGTTCTACATTGATAATTTTTTACAT
254 -AAATCTTACACATTT-ACGTCAATATTTTAA-AAATTTTGTTCTACTTTTATAATTTTTTA-TT
* * *
2129008 TAATTCTTATAGGTTTACTTCAAAGTTTTTCAAGTCTTAATTTTTACTATAATTATTTTTATCCT
315 TAATTCTTATAGGTTTACTT-AAAGTTTTTCAACTCATAATTTTCACTATAATTATTTTTATCCT
** *
2129073 TATTATTATTCCTTTATAAATTAAAATTTATAAACCATTAAATACTTTTAGCATGATAATATAAA
379 TATTATTATT-CTTTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTTGATAATATAAA
2129138 TTTA
443 TTTA
2129142 TTTTAACTTA
Statistics
Matches: 810, Mismatches: 119, Indels: 60
0.82 0.12 0.06
Matches are distributed among these distances:
500 3 0.00
501 5 0.01
502 63 0.08
503 313 0.39
504 110 0.14
505 186 0.23
506 121 0.15
507 5 0.01
508 4 0.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (496 bp):
TACATTAAATCTCATACATTTATATCAATATAAACAATTCTTGTTTCACCTTTATAATTTTTTAT
ATTAATTCTTACAAGTTTACGTCAAAGTTTTAGTAGTTAATTTTCACTATAATTATTTTTATCTT
ATTATTATTCATTTATAAATTAAAATTTATAAAATATTAAATAATTTTAGCTCAATAATATAAAT
TAAAATGTTTAATTTTCACAAAAATTATATTTATTTTGACTTAATTGACTTGTTACTTAAATCTT
ACACATTTACGTCAATATTTTAAAAATTTTGTTCTACTTTTATAATTTTTTATTTAATTCTTATA
GGTTTACTTAAAGTTTTTCAACTCATAATTTTCACTATAATTATTTTTATCCTTATTATTATTCT
TTATAAATTAAAATTTATAAACTGTTAAATACTTTTAGCTTGATAATATAAATTTAAATATTAAA
TTCTCACAAAAATTATATTCATTTTGACTTAATTCACTTGC
Found at i:2129562 original size:475 final size:474
Alignment explanation
Indices: 2128673--2129581 Score: 1202
Period size: 475 Copynumber: 1.9 Consensus size: 474
2128663 TATTCATTTG
* *
2128673 ACTTAATTGCTTGCTACATTAAATCTCATACATTTACGTCAATACTGAAACAATTCTTGTTTCAC
1 ACTTAATTGCTTGCTACATTAAATCTCACACATTTACGTCAATACTGAAACAATACTTGTTTCAC
*
2128738 CTTTATAATTTTTTCTATTAATTCTTACAAGTTTATGTCAAGGTTTTTCAATTGTTAATTTTCAC
66 CTTTATAATTTTTTCTATTAATTCTTACAAGTTTACGTCAAGGTTTTTCAATTGTTAATTTTCAC
*
2128803 TATAATTATTTTTAACTTTATTATTATTCATTTATAAATTTAAATTTATAAAATGTTAAATAATT
131 TATAATTATTTTTAACTTTATTATTATTCATTTATAAATTAAAATTTATAAAATGTTAAATAATT
* *
2128868 TTGGCTCAATAATATAAACTTAAAATTTTAATTTTCACAAAATTATATTTATTTTGATTTAATTG
196 TTAGCTCAAGAATATAAACTTAAAATTTTAATTTTCACAAAATTATATTTATTTTGATTTAATTG
** ** * **
2128933 ATTTGTTATGTCAAATCTCACACTTTCACATCAATATTTTAACAAATTTTGTTCTACATTGATAA
261 ACATGAAACGTCAAATCTCACACTTTCACATCAATATTTTAACAAATTACGTTCTACATTGATAA
* * * *
2128998 TTTTTTACATTAATTCTTATAGGTTTACTTCAAAGTTTTTCAAGTCTTAATTTTTACTATAATTA
326 TTTTTTACATTAATTCTTACAAGTTTACGTCAAAGTTTTTCAAGTCTTAATTTTCACTATAATTA
*
2129063 TTTTTATCCTTATTATTATTCCTTTATAAATTAAAATTTATAAACCATTAAATACTTTTAGCATG
391 ATTTTATCCTTATTATTATTCCTTTATAAATTAAAATTTATAAACCATTAAATACTTTTAGCATG
2129128 ATAATATAAATTTATTTTA
456 ATAATATAAATTTATTTTA
* * * * * ** *
2129147 ACTTAATTAGTTTGCTACATTAAATCTTACACATTTATGTTAATATTTTAATAATACTTGTTTCA
1 ACTTAATT-GCTTGCTACATTAAATCTCACACATTTACGTCAATACTGAAACAATACTTGTTTCA
* * * * *
2129212 CCTTTATAATTTTTTAC-ATTACTTCTTATAGGTTTGCGTTAAGGTTTTTCAATTGTTAA-TTTC
65 CCTTTATAATTTTTT-CTATTAATTCTTACAAGTTTACGTCAAGGTTTTTCAATTGTTAATTTTC
* * *
2129275 ACTATAATTATTTTTATCTTTATTATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATAT
129 ACTATAATTATTTTTAACTTTATTATTATTCATTTATAAATTAAAATTTATAAAATGTTAAATAA
* ** * * *
2129340 TTTTAGTTTGAGAATATCAA-TTTAATTGTTTAATTTTCACAAAAATTATATTTATTTTGATTTA
194 TTTTAGCTCAAGAATATAAACTTAAAAT-TTTAATTTTCAC-AAAATTATATTTATTTTGATTTA
* * * * * * *
2129404 ATTGACATGAAACGTTAAATTTCACA-TATTTATATTAATATTTTAA-TAA-TACGTAT-TCCAT
257 ATTGACATGAAACGTCAAATCTCACACT-TTCACATCAATATTTTAACAAATTACGT-TCTACAT
* ** * * *
2129465 CTCTATAATTTTTTATGTTAGTTCTTACAAGTTTACGTCAAAGTTTTTCTATTCTTAATTTTCAC
320 -T-GATAATTTTTTACATTAATTCTTACAAGTTTACGTCAAAGTTTTTCAAGTCTTAATTTTCAC
* *
2129530 TATAATTAATTTTATCCTTATTATTATTCCTTTATAGATTAAAATTTGTAAA
383 TATAATTAATTTTATCCTTATTATTATTCCTTTATAAATTAAAATTTATAAA
2129582 TTGTTAAATA
Statistics
Matches: 372, Mismatches: 55, Indels: 15
0.84 0.12 0.03
Matches are distributed among these distances:
473 12 0.03
474 104 0.28
475 255 0.69
476 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.50
Consensus pattern (474 bp):
ACTTAATTGCTTGCTACATTAAATCTCACACATTTACGTCAATACTGAAACAATACTTGTTTCAC
CTTTATAATTTTTTCTATTAATTCTTACAAGTTTACGTCAAGGTTTTTCAATTGTTAATTTTCAC
TATAATTATTTTTAACTTTATTATTATTCATTTATAAATTAAAATTTATAAAATGTTAAATAATT
TTAGCTCAAGAATATAAACTTAAAATTTTAATTTTCACAAAATTATATTTATTTTGATTTAATTG
ACATGAAACGTCAAATCTCACACTTTCACATCAATATTTTAACAAATTACGTTCTACATTGATAA
TTTTTTACATTAATTCTTACAAGTTTACGTCAAAGTTTTTCAAGTCTTAATTTTCACTATAATTA
ATTTTATCCTTATTATTATTCCTTTATAAATTAAAATTTATAAACCATTAAATACTTTTAGCATG
ATAATATAAATTTATTTTA
Found at i:2129881 original size:506 final size:505
Alignment explanation
Indices: 2129234--2130167 Score: 1133
Period size: 506 Copynumber: 1.8 Consensus size: 505
2129224 TTTACATTAC
* * * * ** *
2129234 TTCTTATAGGTTTGCGTTAAGGTTTTTCAATTGTTAATTTCACTATAATTATTTTTATCTTTATT
1 TTCTTATAAGTTTACGTTAAGATTTTTCAATCGCCAATTTCAATATAATTATTTTTATCTTTATT
* * * * * * *
2129299 ATTATTCATTTATAAATTAAAATTTATAAACTGTTAAATATTTTTAGTTTGAGAATATCAATTTA
66 ATTATTCAGTTATAAATAAAAATTTATAAACTGTTAAAGATTTTAACTATGAGAATATAAATTTA
* * * * * * *
2129364 ATTGTTTAATTTTCACAAAAATTATATTTATTTTGATTTAATTGACATGAAACGTTAAATTTCAC
131 AATATTTAATTTTCAAAAAAATTAGATTTATTTTGACTTAATTGACATGAAACATTAAATCTCAC
* * * * * * ** *
2129429 ATATTTATATTAATATTTTAATAATACGTATTCCATCTCTATAATTTTTTATGTTAGTTCTTACA
196 ACATTTATATCAACATTTTAACAATACGTATTCCACCTCTATAACTTTTTACATTAATTCTTACA
2129494 AGTTTACGTCAAAGTTTTTCT-A-TTCTTAATTTTCACTATAATTAATT-T-TATCCTTATTATT
261 AGTTTACGTCAAAGTTTTT-TAATTTC-TAATTTTCACTATAATT-ATTGTGT-TCCTTATTATT
* * ** * * *
2129555 ATTCCTTTATAGATTAAAATTTGTAAATTGTTAAATAATTTTAACTCGAAAAAATAGATGTAAAT
322 ATTCCTTTATAAATTAAAATTTATAAATCATTAAATAATTTCAACACGAAAAAATAAATGTAAAT
* * *
2129620 GTTTAATTTTTTCAAAAATTAGATTCATTTTGACTTAATTGAATTGTTATGTTAAATTTCACATA
387 ATTTAATTTTTACAAAAATTAGATTCATTTTAACTTAATTGAATTGTTATGTTAAATTTCACATA
2129685 TTTACGCTAATATTTTAATAATGTTTGTAGCATATTTGTAGTTTTTGATGTTAA
452 TTTACGCTAATATTTTAATAATGTTTGTAGCATATTTGTAGTTTTTGATGTTAA
*
2129739 TTCTTATAAGTTTATGTTAAGATTTTTCAATCGCCAATTTTCAATATAATTATTTTTATCTTTAT
1 TTCTTATAAGTTTACGTTAAGATTTTTCAATCGCCAA-TTTCAATATAATTATTTTTATCTTTAT
* * *
2129804 TATTATTTC-GTTATAAATAAAAATTTGTAAATTGTTAAACGCTTTTAACTAT-AGAATATAAAT
65 TATTA-TTCAGTTATAAATAAAAATTTATAAACTGTTAAA-GATTTTAACTATGAGAATATAAAT
* * **
2129867 TTAAATATTTAATTTTTAAAAAAATTAGATTTATTTTGACTTAATTGACTTGTTACATTAAATCT
128 TTAAATATTTAATTTTCAAAAAAATTAGATTTATTTTGACTTAATTGACATGAAACATTAAATCT
* * * * ** *
2129932 CAGACATTTATGTCAACATTTTAACAATACTTGTTTTACCTTTATAACTTTTTACATTAATTCTT
193 CACACATTTATATCAACATTTTAACAATACGTATTCCACCTCTATAACTTTTTACATTAATTCTT
* * * * * *
2129997 ATAAGTTTATGTTAAGGTTTTTTAATTTCTAATTTTCAGTATAATTATTGTGTTCCTTATTATTG
258 ACAAGTTTACGTCAAAGTTTTTTAATTTCTAATTTTCACTATAATTATTGTGTTCCTTATTATTA
* ** * * * *
2130062 TTTCTTTATAAATTAAAATTTATAAATCATTAAATGCTTTCAGCACGAGAATATAAATTTAAATA
323 TTCCTTTATAAATTAAAATTTATAAATCATTAAATAATTTCAACACGAAAAAATAAATGTAAATA
* *
2130127 TTTAATTTTTACAAAAATTAGATTTATTTTAACTTGATTGA
388 TTTAATTTTTACAAAAATTAGATTCATTTTAACTTAATTGA
2130168 CTTCTTGTTA
Statistics
Matches: 352, Mismatches: 70, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
505 34 0.10
506 304 0.86
507 14 0.04
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (505 bp):
TTCTTATAAGTTTACGTTAAGATTTTTCAATCGCCAATTTCAATATAATTATTTTTATCTTTATT
ATTATTCAGTTATAAATAAAAATTTATAAACTGTTAAAGATTTTAACTATGAGAATATAAATTTA
AATATTTAATTTTCAAAAAAATTAGATTTATTTTGACTTAATTGACATGAAACATTAAATCTCAC
ACATTTATATCAACATTTTAACAATACGTATTCCACCTCTATAACTTTTTACATTAATTCTTACA
AGTTTACGTCAAAGTTTTTTAATTTCTAATTTTCACTATAATTATTGTGTTCCTTATTATTATTC
CTTTATAAATTAAAATTTATAAATCATTAAATAATTTCAACACGAAAAAATAAATGTAAATATTT
AATTTTTACAAAAATTAGATTCATTTTAACTTAATTGAATTGTTATGTTAAATTTCACATATTTA
CGCTAATATTTTAATAATGTTTGTAGCATATTTGTAGTTTTTGATGTTAA
Found at i:2130169 original size:253 final size:253
Alignment explanation
Indices: 2129137--2130170 Score: 1015
Period size: 253 Copynumber: 4.1 Consensus size: 253
2129127 GATAATATAA
* * * * *
2129137 ATTTATTTTAACTTAATT-AGTTTGCTACATTAAATCTTACACATTTATGTTAATATTTTAATAA
1 ATTTATTTTGACTTAATTGA-CTTGTTACATTAAATCTCACACATTTATGTCAATATTTTAATAA
* * *
2129201 TACTTGTTTCACCTTTATAATTTTTTACATTACTTCTTATAGGTTTGCGTTAAGGTTTTTCAATT
65 TACTTGTTTCACCTTTATAATTTTTTACATTAATTCTTATAAGTTTACGTTAAGGTTTTTCAATT
*
2129266 GT-TAA-TTTCACTATAATTATTTTTATCTTTATTATTA-TTCATTTATAAATTAAAATTTATAA
130 -TCTAATTTTCACTATAATTATTTTTATCCTTATTATTATTTC-TTTATAAATTAAAATTTATAA
* **** * * * * *
2129328 A-CTGTTAAATATTTTTAGTTTGAGAATATCAATTTAATTGTTTAATTTTCACAAAAATTAT
193 ATC-GTTAAATACTTTTAACACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
* * ** * * * * *
2129389 ATTTATTTTGATTTAATTGACATGAAACGTTAAATTTCACATATTTATATTAATATTTTAATAAT
1 ATTTATTTTGACTTAATTGACTTGTTACATTAAATCTCACACATTTATGTCAATATTTTAATAAT
* * * * * ** * * * * *
2129454 ACGTATTCCATCTCTATAATTTTTTATGTTAGTTCTTACAAGTTTACGTCAAAGTTTTTCTA-TT
66 ACTTGTTTCACCTTTATAATTTTTTACATTAATTCTTATAAGTTTACGTTAAGGTTTTTCAATTT
* * * *
2129518 CTTAATTTTCACTATAATTAATTTTATCCTTATTATTATTCCTTTATAGATTAAAATTTGTAAAT
131 C-TAATTTTCACTATAATTATTTTTATCCTTATTATTATTTCTTTATAAATTAAAATTTATAAAT
* * * * * * * * *
2129583 TGTTAAATAATTTTAACTCGAAAAAATAGATGTAAATGTTTAATTTTTTCAAAAATTAG
195 CGTTAAATACTTTTAACACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
* * ** * * *
2129642 ATTCATTTTGACTTAATTGAATTGTTATGTTAAATTTCACATATTTACG-CTAATATTTTAATAA
1 ATTTATTTTGACTTAATTGACTTGTTACATTAAATCTCACACATTTATGTC-AATATTTTAATAA
** ** ** * * * ** * * *
2129706 TGTTTGTAGCATATTTGTAGTTTTTGATGTTAATTCTTATAAGTTTATGTTAAGATTTTTCAATC
65 TACTTGTTTCACCTTTATAATTTTTTACATTAATTCTTATAAGTTTACGTTAAGGTTTTTCAATT
* * * * * * *
2129771 GCCAATTTTCAATATAATTATTTTTATCTTTATTATTATTTCGTTATAAATAAAAATTTGTAAAT
130 TCTAATTTTCACTATAATTATTTTTATCCTTATTATTATTTCTTTATAAATTAAAATTTATAAAT
* ** * *
2129836 TGTTAAACGCTTTTAACTA-TAGAATATAAATTTAAATATTTAATTTTTAAAAAAATTAG
195 CGTTAAATACTTTTAAC-ACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
* * *
2129895 ATTTATTTTGACTTAATTGACTTGTTACATTAAATCTCAGACATTTATGTCAACATTTTAACAAT
1 ATTTATTTTGACTTAATTGACTTGTTACATTAAATCTCACACATTTATGTCAATATTTTAATAAT
* * * *
2129960 ACTTGTTTTACCTTTATAACTTTTTACATTAATTCTTATAAGTTTATGTTAAGGTTTTTTAATTT
66 ACTTGTTTCACCTTTATAATTTTTTACATTAATTCTTATAAGTTTACGTTAAGGTTTTTCAATTT
* * *
2130025 CTAATTTTCAGTATAATTATTGTGT-TCCTTATTATTGTTTCTTTATAAATTAAAATTTATAAAT
131 CTAATTTTCACTATAATTATT-TTTATCCTTATTATTATTTCTTTATAAATTAAAATTTATAAAT
* * * *
2130089 CATTAAATGCTTTCAGCACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
195 CGTTAAATACTTTTAACACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
* *
2130148 ATTTATTTTAACTTGATTGACTT
1 ATTTATTTTGACTTAATTGACTT
2130171 CTTGTTATAA
Statistics
Matches: 632, Mismatches: 138, Indels: 23
0.80 0.17 0.03
Matches are distributed among these distances:
250 1 0.00
251 1 0.00
252 104 0.16
253 520 0.82
254 6 0.01
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.49
Consensus pattern (253 bp):
ATTTATTTTGACTTAATTGACTTGTTACATTAAATCTCACACATTTATGTCAATATTTTAATAAT
ACTTGTTTCACCTTTATAATTTTTTACATTAATTCTTATAAGTTTACGTTAAGGTTTTTCAATTT
CTAATTTTCACTATAATTATTTTTATCCTTATTATTATTTCTTTATAAATTAAAATTTATAAATC
GTTAAATACTTTTAACACGAGAATATAAATTTAAATATTTAATTTTTACAAAAATTAG
Found at i:2149371 original size:54 final size:53
Alignment explanation
Indices: 2149289--2149454 Score: 192
Period size: 53 Copynumber: 3.1 Consensus size: 53
2149279 TAAAAGGTAT
* *
2149289 TGTAAGGGTTATCATTTGATCTTGTTAAAAAGAAAGAATCTTCTTTGTAGATTA
1 TGTAAGGGTTATTACTTGATCTTGTTAAAAAGAAAGAATCTT-TTTGTAGATTA
* * *
2149343 TGTAAGGGTTATTACTTAATCTTGTTAAAAAGCAAGAATCTTTTTGT-GAATTG
1 TGTAAGGGTTATTACTTGATCTTGTTAAAAAGAAAGAATCTTTTTGTAG-ATTA
* * ** * *
2149396 TGAAAGGGTTATTGCTTGGCCTTGTTAAAAAGTACA-AATCCTTTTGTAGATTA
1 TGTAAGGGTTATTACTTGATCTTGTTAAAAAG-AAAGAATCTTTTTGTAGATTA
2149449 TGTAAG
1 TGTAAG
2149455 AGCTATCCCA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 53 0.56
54 40 0.43
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (53 bp):
TGTAAGGGTTATTACTTGATCTTGTTAAAAAGAAAGAATCTTTTTGTAGATTA
Found at i:2151137 original size:2 final size:2
Alignment explanation
Indices: 2151130--2151161 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2151120 TGAGAAACCT
*
2151130 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2151162 AAAGGTTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2165623 original size:25 final size:25
Alignment explanation
Indices: 2165595--2165668 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
2165585 CATGTACAAC
*
2165595 ATGTGACAAGGCATGTAGGTTCAAA
1 ATGTGACAAGGCACGTAGGTTCAAA
* * *
2165620 ATGTGTCAAAGCACAT-GGTTTCAAA
1 ATGTGACAAGGCACGTAGG-TTCAAA
** *
2165645 ACATGACGAGGCACGTAGGTTCAA
1 ATGTGACAAGGCACGTAGGTTCAA
2165669 GACATGTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
24 2 0.05
25 33 0.89
26 2 0.05
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (25 bp):
ATGTGACAAGGCACGTAGGTTCAAA
Found at i:2166198 original size:30 final size:30
Alignment explanation
Indices: 2166164--2166225 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
2166154 TTGTATTTTT
2166164 ATCAAAAGCATTCC-CAACGCTATTCTAAAC
1 ATCAAAAGCA-TCCACAACGCTATTCTAAAC
* *
2166194 ATCAAAAGCATCCACAATGCTATTTTAAAC
1 ATCAAAAGCATCCACAACGCTATTCTAAAC
2166224 AT
1 AT
2166226 GCTTACGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (30 bp):
ATCAAAAGCATCCACAACGCTATTCTAAAC
Found at i:2171390 original size:22 final size:21
Alignment explanation
Indices: 2171366--2171444 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 21
2171356 ATTTTTATTT
2171366 TATTTTATTTTTAAATATTAA
1 TATTTTATTTTTAAATATTAA
2171387 TTATTTATAATTTATTTAAAATATTAA
1 -TATTT-T-A-TT-TTT-AAATATTAA
* * *
2171414 TAATTGATCATTTAAATATTAA
1 TATTTTAT-TTTTAAATATTAA
2171436 TATTTTATT
1 TATTTTATT
2171445 CATAATTCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
22 20 0.44
23 5 0.11
24 2 0.04
25 2 0.04
26 7 0.16
27 9 0.20
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (21 bp):
TATTTTATTTTTAAATATTAA
Found at i:2171392 original size:27 final size:27
Alignment explanation
Indices: 2171360--2171414 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
2171350 TTACCTATTT
* *
2171360 TTATTT-TATTTTATTTTTAAATATTAA
1 TTATTTATAATTTA-TTTAAAATATTAA
2171387 TTATTTATAATTTATTTAAAATATTAA
1 TTATTTATAATTTATTTAAAATATTAA
2171414 T
1 T
2171415 AATTGATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TTATTTATAATTTATTTAAAATATTAA
Found at i:2171426 original size:27 final size:28
Alignment explanation
Indices: 2171369--2171427 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
2171359 TTTATTTTAT
* * *
2171369 TTTATTTTTAAATATTAATTATTTATAA
1 TTTATTTTAAAATATTAATAATTGATAA
*
2171397 TTTA-TTTAAAATATTAATAATTGATCA
1 TTTATTTTAAAATATTAATAATTGATAA
2171424 TTTA
1 TTTA
2171428 AATATTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (28 bp):
TTTATTTTAAAATATTAATAATTGATAA
Found at i:2171661 original size:16 final size:16
Alignment explanation
Indices: 2171640--2171671 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2171630 TTGATAATTT
2171640 AAATATTAACATTTTA
1 AAATATTAACATTTTA
*
2171656 AAATATTAATATTTTA
1 AAATATTAACATTTTA
2171672 TTTATAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATATTAACATTTTA
Found at i:2171715 original size:16 final size:15
Alignment explanation
Indices: 2171633--2171715 Score: 57
Period size: 15 Copynumber: 5.6 Consensus size: 15
2171623 TTTATAATTG
2171633 ATAATTTAAATATTA
1 ATAATTTAAATATTA
* *
2171648 ACATTTTAAAATATTA
1 ATAATTT-AAATATTA
*
2171664 AT-ATTT---TATTT
1 ATAATTTAAATATTA
*
2171675 ATAAGTTAAATATTA
1 ATAATTTAAATATTA
* *
2171690 TTATGATTAAAATATTA
1 --ATAATTTAAATATTA
2171707 ATAATTTAA
1 ATAATTTAA
2171716 TTAATTTGCC
Statistics
Matches: 49, Mismatches: 12, Indels: 14
0.65 0.16 0.19
Matches are distributed among these distances:
11 6 0.12
12 3 0.06
15 19 0.39
16 9 0.18
17 12 0.24
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (15 bp):
ATAATTTAAATATTA
Found at i:2181440 original size:30 final size:30
Alignment explanation
Indices: 2181389--2181448 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
2181379 TTTGTATTTT
*
2181389 TATCAAAAGCATTCCCCATGCTATTCTAAA
1 TATCAAAAGCATTCCCAATGCTATTCTAAA
* *
2181419 TATCAAAAGCA-TCCATAATGCTATTTTAAA
1 TATCAAAAGCATTCC-CAATGCTATTCTAAA
2181449 CAAGCTTACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.32
Consensus pattern (30 bp):
TATCAAAAGCATTCCCAATGCTATTCTAAA
Found at i:2188068 original size:27 final size:28
Alignment explanation
Indices: 2188033--2188091 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
2188023 TTTATTTTAT
* * *
2188033 TTTATTTTAAAATATTTATAATTTATAA
1 TTTATTTTAAAATACTAATAATTGATAA
*
2188061 TTTA-TTTAAAATCCTAATAATTGATAA
1 TTTATTTTAAAATACTAATAATTGATAA
2188088 TTTA
1 TTTA
2188092 AATAGTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (28 bp):
TTTATTTTAAAATACTAATAATTGATAA
Found at i:2202214 original size:169 final size:169
Alignment explanation
Indices: 2201925--2202242 Score: 449
Period size: 169 Copynumber: 1.9 Consensus size: 169
2201915 ACCCAAAAAA
* * * ** **
2201925 CATCTCTTACTGATATGAGATCTATGACATTTTACCCCACCCAATTGTGCAACCCTTTTGTTGCA
1 CATCTCTTACTGATATGAGATCCATGACATTCTACCCCACCCAATTGTACAACCCCCTCATTGCA
* ** * *
2201990 CTAGCTCTTTACTTGTAAGAGAGAAAGACTTTTACACTAGTTCGGATCTACCTCGACCCTTGTAT
66 CTAGCTCTTGACCCGTAAGAAAGAAAGACTTTTACACTAATTCGGATCTACCTCGACCCTTGTAT
2202055 CTTTCATGGGGGTCCACATATTTATATACCATATCCATG
131 CTTTCATGGGGGTCCACATATTTATATACCATATCCATG
* * * *
2202094 CATCTTTTACTGATGTGAGATCCGTGACATTCTACTCCACCCAATTGTACAACCCCCTCATTGCA
1 CATCTCTTACTGATATGAGATCCATGACATTCTACCCCACCCAATTGTACAACCCCCTCATTGCA
* * *
2202159 CTAGCTCTTGACCCGTAGGAAAGAAAGACTTTTACACTAATTCGAGTTC-ACCTCGACCGTTGTA
66 CTAGCTCTTGACCCGTAAGAAAGAAAGACTTTTACACTAATTCG-GATCTACCTCGACCCTTGTA
2202223 TCTTTCATGGGGGTCCACAT
130 TCTTTCATGGGGGTCCACAT
2202243 CAGTGAAGAT
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
169 126 0.98
170 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (169 bp):
CATCTCTTACTGATATGAGATCCATGACATTCTACCCCACCCAATTGTACAACCCCCTCATTGCA
CTAGCTCTTGACCCGTAAGAAAGAAAGACTTTTACACTAATTCGGATCTACCTCGACCCTTGTAT
CTTTCATGGGGGTCCACATATTTATATACCATATCCATG
Found at i:2215785 original size:7 final size:7
Alignment explanation
Indices: 2215773--2215797 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2215763 CCAGCTTTCG
2215773 TTTTCTA
1 TTTTCTA
2215780 TTTTCTA
1 TTTTCTA
2215787 TTTTCTA
1 TTTTCTA
2215794 TTTT
1 TTTT
2215798 AGTTTCAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTA
Found at i:2220430 original size:2 final size:2
Alignment explanation
Indices: 2220425--2220451 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2220415 AATTAAAGAG
2220425 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2220452 TATTAATCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2220646 original size:2 final size:2
Alignment explanation
Indices: 2220639--2220677 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
2220629 AGAGTACAAC
*
2220639 AG AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2220678 ATGGTATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.46, T:0.03
Consensus pattern (2 bp):
AG
Found at i:2223381 original size:23 final size:23
Alignment explanation
Indices: 2223327--2223382 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
2223317 TAAGGTTTAA
* * *
2223327 CATTGCGTGACTGGTTGATATGT
1 CATTGTGTGACTAGTTGATAGGT
* *
2223350 CATTATGTGACTAGTTTATAGGT
1 CATTGTGTGACTAGTTGATAGGT
*
2223373 TATTGTGTGA
1 CATTGTGTGA
2223383 ATATGGCTCA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.43
Consensus pattern (23 bp):
CATTGTGTGACTAGTTGATAGGT
Found at i:2225261 original size:12 final size:12
Alignment explanation
Indices: 2225233--2225285 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
2225223 ATTCCAATTA
2225233 CTACTCTTGATG
1 CTACTCTTGATG
* *
2225245 TTACTCTTAATG
1 CTACTCTTGATG
*
2225257 CTACTTCTCTTCATG
1 CTA---CTCTTGATG
2225272 CTACTCTTGATG
1 CTACTCTTGATG
2225284 CT
1 CT
2225286 GTTGTTCTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 22 0.67
15 11 0.33
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.45
Consensus pattern (12 bp):
CTACTCTTGATG
Found at i:2225261 original size:27 final size:27
Alignment explanation
Indices: 2225231--2225285 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
2225221 CAATTCCAAT
* *
2225231 TACTACTCTTGATGTTACTCTTAATGC
1 TACTACTCTTCATGCTACTCTTAATGC
* *
2225258 TACTTCTCTTCATGCTACTCTTGATGC
1 TACTACTCTTCATGCTACTCTTAATGC
2225285 T
1 T
2225286 GTTGTTCTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.18, C:0.25, G:0.11, T:0.45
Consensus pattern (27 bp):
TACTACTCTTCATGCTACTCTTAATGC
Found at i:2227293 original size:26 final size:26
Alignment explanation
Indices: 2227264--2227315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2227254 GCATCATCTC
*
2227264 CAAATTATT-CTTTGTTGTATCATTTA
1 CAAATTATTCCTTT-TTGTAGCATTTA
2227290 CAAATTATTCCTTTTTGTAGCATTTA
1 CAAATTATTCCTTTTTGTAGCATTTA
2227316 ATAAAGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (26 bp):
CAAATTATTCCTTTTTGTAGCATTTA
Found at i:2228499 original size:219 final size:219
Alignment explanation
Indices: 2227939--2228590 Score: 1062
Period size: 218 Copynumber: 3.0 Consensus size: 219
2227929 AGCAACACCG
* *
2227939 TTTGAATAAAAGGAAAAGAATTAACCGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
1 TTTGAATAAAAAGAAAAGAATTAACTGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
* * *
2228004 AAATTTTAGTTTAGTTATTTAACA-ATGTAATCATGTACATTCTCTCTTTTAAAATGTATCATGA
66 AAATTTTAGTTTAGTTAGTTAACATA-GTAATCATGTACATTCTCTCTCTTAAAATGTATCGTGA
* * *
2228068 TGAGTAAACATATAATGATAAAATAAATCTACACTTTCTAAGCTATGTGACACACTAAAGAAGCT
130 TGAGTAAACATACAATGATAAAATATATCTACACTTTCTAAGCTATGTGACACACTAAAGAAGCC
*
2228133 AAGAATATCAAAAGTTCACTTTCGT
195 GAGAATATCAAAAGTTCACTTTCGT
* ** *
2228158 TTTGAAT-AAAAGAAAAGAATTAACTGAGCTAGCAGAAACTCAGTGTTTTGTATAGCAATTGTTT
1 TTTGAATAAAAAGAAAAGAATTAACTGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
*
2228222 AAATTTTAGTTTAGTTAGTTAACATAGTAATCATGTCCATTCTCTCTCTTAAAATGTATCGTGAT
66 AAATTTTAGTTTAGTTAGTTAACATAGTAATCATGTACATTCTCTCTCTTAAAATGTATCGTGAT
*
2228287 GAGTAAACATACAATGATAAAATATATCTACACTTTCTAAGTTATGTGACACACTAAA-AAGGCC
131 GAGTAAACATACAATGATAAAATATATCTACACTTTCTAAGCTATGTGACACACTAAAGAA-GCC
*
2228351 GAGAATATCAAAAGTTTACTTTCGT
195 GAGAATATCAAAAGTTCACTTTCGT
2228376 TTTGAATAAAAAGAAAAGAATTAACTGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
1 TTTGAATAAAAAGAAAAGAATTAACTGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
* *
2228441 AAATTTTAGTTTAGTTAGTTAACATAGTAATCATGTGCATTTTCTCTCTTAAAATGTATCGTGAT
66 AAATTTTAGTTTAGTTAGTTAACATAGTAATCATGTACATTCTCTCTCTTAAAATGTATCGTGAT
* * *
2228506 GAGTAAACATACAATGATAAAATGTATCTACACTTTCTGAGCTATGTGA-ACACTAAAGAACCCG
131 GAGTAAACATACAATGATAAAATATATCTACACTTTCTAAGCTATGTGACACACTAAAGAAGCCG
2228570 AGAATATCAAAAGTTCA-TTTC
196 AGAATATCAAAAGTTCACTTTC
2228591 CTTAATGACA
Statistics
Matches: 402, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
217 6 0.01
218 224 0.56
219 172 0.43
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (219 bp):
TTTGAATAAAAAGAAAAGAATTAACTGAGCTAGTAGAAACAAAGTGTTTTGTATAGCAATTTTTT
AAATTTTAGTTTAGTTAGTTAACATAGTAATCATGTACATTCTCTCTCTTAAAATGTATCGTGAT
GAGTAAACATACAATGATAAAATATATCTACACTTTCTAAGCTATGTGACACACTAAAGAAGCCG
AGAATATCAAAAGTTCACTTTCGT
Found at i:2232527 original size:210 final size:211
Alignment explanation
Indices: 2232103--2232553 Score: 514
Period size: 210 Copynumber: 2.2 Consensus size: 211
2232093 AACATCACTC
** * *
2232103 AATACATAACAACCAGTCATACAATG-TCTAAAAAGTAGTCAAAAAATGTCTCAAAATAATATAT
1 AATACATAACAACCAGTCACGCAATGCTCTAAAAAGTAATCAAAAAATGTCTCAAAATAAGATAT
* * * * *
2232167 GCATTACAAAATTCACGTAGAGCCTATAAGCTAATCTCGCAATACCTAATAATAAGTCACTCAAT
66 ACATTACAAAATTCACGCAGAGCCAATAAGCTAATCTCGCAATACCAAATAATAAGTCACGCAAT
* ** * ** *
2232232 GCTTAATAGCCACTCACGTTATGCCAAAATAACCAGTCACGTATTAGCCCACGTCACACAATATA
131 ACCCAATAGCCACTCACGTTATGCCAAAATAACCAATCACACATTAGCCCACGTCACACAATACA
* *
2232297 CAACAACGAGTCATGG
196 CAAAAACGAGTCACGG
* * * *
2232313 AATACATAATAATCAGTCACGCAATGCT-TAAAAAGTAATCAAGAAATGTCTCAAAATTAGATAT
1 AATACATAACAACCAGTCACGCAATGCTCTAAAAAGTAATCAAAAAATGTCTCAAAATAAGATAT
* * * * *
2232377 ACATTGCACAATTCACGCA-ACTCCAATAAGCTAGTCTTGCAATACCAAATAATAAGTCACGCAA
66 ACATTACAAAATTCACGCAGA-GCCAATAAGCTAATCTCGCAATACCAAATAATAAGTCACGCAA
* * * * * * * *
2232441 TACCCAATATCCACTCACGTTATGCTAAAATACCCAATGACACATTGGCCTATGTCACGCAATAC
130 TACCCAATAGCCACTCACGTTATGCCAAAATAACCAATCACACATTAGCCCACGTCACACAATAC
* **
2232506 ATAAAAATTAGTCACGG
195 ACAAAAACGAGTCACGG
*
2232523 AATACATAACAACCAGACACGCAATGC-CTAA
1 AATACATAACAACCAGTCACGCAATGCTCTAA
2232554 TATCCATTGA
Statistics
Matches: 197, Mismatches: 41, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
209 1 0.01
210 195 0.99
211 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.23
Consensus pattern (211 bp):
AATACATAACAACCAGTCACGCAATGCTCTAAAAAGTAATCAAAAAATGTCTCAAAATAAGATAT
ACATTACAAAATTCACGCAGAGCCAATAAGCTAATCTCGCAATACCAAATAATAAGTCACGCAAT
ACCCAATAGCCACTCACGTTATGCCAAAATAACCAATCACACATTAGCCCACGTCACACAATACA
CAAAAACGAGTCACGG
Found at i:2232593 original size:22 final size:22
Alignment explanation
Indices: 2232544--2232585 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2232534 ACCAGACACG
* *
2232544 CAATGCCTAATATCCATTGATA
1 CAATGCATAATATCCATTCATA
2232566 CAATGCATAATATCCATTCA
1 CAATGCATAATATCCATTCA
2232586 CTTAATGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (22 bp):
CAATGCATAATATCCATTCATA
Found at i:2233852 original size:38 final size:38
Alignment explanation
Indices: 2233759--2233852 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
2233749 GGGATGGTGA
* * *
2233759 AAAAGTTAGATGGTG--ATATAAACCTTGATGGCGTTG
1 AAAAGTTAGACGGTGAAATATAAACCCTAATGGCGTTG
* * * **
2233795 GAGAGTTGGACGGAAAAATATAAACCCTAATGGCGTTG
1 AAAAGTTAGACGGTGAAATATAAACCCTAATGGCGTTG
2233833 AAAAGTTAGACGGTGAAATA
1 AAAAGTTAGACGGTGAAATA
2233853 GCTAAATCGA
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
36 9 0.21
38 34 0.79
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (38 bp):
AAAAGTTAGACGGTGAAATATAAACCCTAATGGCGTTG
Found at i:2240057 original size:18 final size:19
Alignment explanation
Indices: 2240021--2240059 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
2240011 GAACCCAAAC
**
2240021 CTTCATTCTTTTTTCCTTT
1 CTTCATTCTTTTTAACTTT
2240040 CTTC-TTCTTTTTAACTTT
1 CTTCATTCTTTTTAACTTT
2240058 CT
1 CT
2240060 CAGGAACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.08, C:0.26, G:0.00, T:0.67
Consensus pattern (19 bp):
CTTCATTCTTTTTAACTTT
Found at i:2240857 original size:18 final size:18
Alignment explanation
Indices: 2240834--2240868 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2240824 ATATATATAT
2240834 ATGTTAG-TTGTTATTTAC
1 ATGTTAGATT-TTATTTAC
2240852 ATGTTAGATTTTATTTA
1 ATGTTAGATTTTATTTA
2240869 TGTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.26, C:0.03, G:0.14, T:0.57
Consensus pattern (18 bp):
ATGTTAGATTTTATTTAC
Found at i:2248237 original size:54 final size:58
Alignment explanation
Indices: 2248142--2248251 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 58
2248132 ATGCCAAAAC
*
2248142 ACCACCACCATTTGCTTAACAAGGCTAAGTTTTTATGGCAAA-TGCTAGAAATACCAAG
1 ACCACCACCATTTGCTTAACAAGGCTAAGTTTTTATGGCAAAGT-CTAGAAACACCAAG
*
2248200 ACCACCACCATTTG-TT-A-AA-GCTACGTTTTTATGGCAAAGTCTAGAAACACCA
1 ACCACCACCATTTGCTTAACAAGGCTAAGTTTTTATGGCAAAGTCTAGAAACACCA
2248252 CCTCATTTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
54 29 0.59
55 3 0.06
56 1 0.02
57 2 0.04
58 14 0.29
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (58 bp):
ACCACCACCATTTGCTTAACAAGGCTAAGTTTTTATGGCAAAGTCTAGAAACACCAAG
Found at i:2254797 original size:36 final size:36
Alignment explanation
Indices: 2254725--2254840 Score: 128
Period size: 36 Copynumber: 3.2 Consensus size: 36
2254715 TCTCAGGCAT
* * *
2254725 TTGATTAAAATTGTTAAATT-AATTCATTAGGCTTAA
1 TTGATTAAAATTGTTTAATTAAATT-ATTGGGTTTAA
*
2254761 TTGATTAAAATTGTTTAATTAAATTGTTGGGTTTAA
1 TTGATTAAAATTGTTTAATTAAATTATTGGGTTTAA
* * * * *
2254797 TTAATT-AAATTTTTTAATTAAGTTATTGAGTCTAA
1 TTGATTAAAATTGTTTAATTAAATTATTGGGTTTAA
2254832 TTGATTAAA
1 TTGATTAAA
2254841 TTAAACAATT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
35 29 0.43
36 34 0.51
37 4 0.06
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.48
Consensus pattern (36 bp):
TTGATTAAAATTGTTTAATTAAATTATTGGGTTTAA
Found at i:2254814 original size:35 final size:35
Alignment explanation
Indices: 2254725--2254842 Score: 114
Period size: 35 Copynumber: 3.3 Consensus size: 35
2254715 TCTCAGGCAT
* *
2254725 TTGATTAAAATTGTTAAATT-AATTCATT-AGGCTTAA
1 TTGATT-AAATTGTTTAATTAAATT-ATTGA-GTTTAA
* *
2254761 TTGATTAAAATTGTTTAATTAAATTGTTGGGTTTAA
1 TTGATT-AAATTGTTTAATTAAATTATTGAGTTTAA
* * * *
2254797 TTAATTAAATTTTTTAATTAAGTTATTGAGTCTAA
1 TTGATTAAATTGTTTAATTAAATTATTGAGTTTAA
2254832 TTGATTAAATT
1 TTGATTAAATT
2254843 AAACAATTGA
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
35 34 0.49
36 31 0.45
37 4 0.06
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.49
Consensus pattern (35 bp):
TTGATTAAATTGTTTAATTAAATTATTGAGTTTAA
Found at i:2262625 original size:248 final size:246
Alignment explanation
Indices: 2262125--2262625 Score: 629
Period size: 247 Copynumber: 2.0 Consensus size: 246
2262115 GACAATATAT
* * * * * *
2262125 ATATATATATGTATGAGATAGAGACAGTAATAAATTAATAATATAGAAAAGAGTTAGATGACCCA
1 ATATATATATATATGAAAGAAAGACAGTAATAAATTAATAATATAGAAAAAAGTTAGATAACCCA
*
2262190 AAATTCAAATGGGGTGAATACTAATGATGATATTGATTGTATTTCATGCAATTCAAAAGGTGATA
66 AAATTCAAATGGGCTGAATACTAATGATGATATTGATTGTATTTCATGCAATTCAAAAGGTGATA
2262255 TCCTTAGCTACGTGTATATTCTGTCTTTTTCGTACCAAATTAAAAAAAAAAAAACATGTGCATGC
131 TCCTTAGCTACGTGTATATTCTGTCTTTTTCGTACCAAATT-AAAAAAAAAAAACATGTGCATGC
* * * *
2262320 ATAGAGGCAGTTTAATTTTTTTATTTTTTTATTTTAATATGTATAAAAGTCA
195 ATAGAGGCAGTGTAAGTTTTTCATTTTTTTATTTTAATATGTATAAAAGTAA
* * *
2262372 ATATATATATATATGAAAGAAAGAGAGTAATAAATTAATAATTTAGAAAAAAAGTTATATAACCC
1 ATATATATATATATGAAAGAAAGACAGTAATAAATTAATAATATAG-AAAAAAGTTAGATAACCC
*
2262437 -AAATGTCAAATGGGCTGAATACTAATGATGATATTGTTTGTATTTTCATGCAATTCAAAAGGTG
65 AAAAT-TCAAATGGGCTGAATACTAATGATGATATTGATTGTA-TTTCATGCAATTCAAAAGGTG
* * * * * ** * * *
2262501 ATATCTTTTATCTATGTGTATGTTCTGTCTTTTTTGTATTAAA-T-CAAAAAAAATATATGTGCA
128 ATATC-CTTAGCTACGTGTATATTCTGTCTTTTTCGTACCAAATTAAAAAAAAAAAACATGTGCA
* * *
2262564 TG-TTAAGAGG-AG-GTACAGTTTTTCATTTTTTTATTTTTATGTGTATAAAAGTTAA
192 TGCAT-AGAGGCAGTGTA-AGTTTTTCATTTTTTTATTTTAATATGTATAAAAG-TAA
2262619 A-ATATAT
1 ATATATAT
2262626 GACTTTGTCA
Statistics
Matches: 219, Mismatches: 28, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
245 2 0.01
246 40 0.18
247 70 0.32
248 50 0.23
249 27 0.12
250 30 0.14
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (246 bp):
ATATATATATATATGAAAGAAAGACAGTAATAAATTAATAATATAGAAAAAAGTTAGATAACCCA
AAATTCAAATGGGCTGAATACTAATGATGATATTGATTGTATTTCATGCAATTCAAAAGGTGATA
TCCTTAGCTACGTGTATATTCTGTCTTTTTCGTACCAAATTAAAAAAAAAAAACATGTGCATGCA
TAGAGGCAGTGTAAGTTTTTCATTTTTTTATTTTAATATGTATAAAAGTAA
Found at i:2262881 original size:41 final size:41
Alignment explanation
Indices: 2262725--2262893 Score: 119
Period size: 41 Copynumber: 3.9 Consensus size: 41
2262715 TTTCTAAGTC
**
2262725 CAAATTTTGAAATTATTTTTCTCTTTTTTTTGTTTCATTCCTTAA-CT
1 CAAATTTTG-AATTATTTTTCT-TTTCCTTT-TTTC--T--TTAAGCT
* * *
2262772 CAAATTTTGAAATTATTTTTCGTTT-CTTGTTTTTTTCTAAGCC
1 CAAATTTTG-AATTATTTTTCTTTTCCTT-TTTTCTT-TAAGCT
* * *
2262815 CAAATTTTGGAATTATATCTATTTTCCTTTTTTCTTT-AGCT
1 CAAATTTT-GAATTATTTTTCTTTTCCTTTTTTCTTTAAGCT
*
2262856 CAAATTTTAGAATTATTTTTCTTTTCATTTTTCTCTTT
1 CAAATTTT-GAATTATTTTTCTTTTCCTTTTT-TCTTT
2262894 TTTCCTTAGC
Statistics
Matches: 101, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
41 31 0.31
42 9 0.09
43 27 0.27
44 4 0.04
45 5 0.05
46 4 0.04
47 21 0.21
ACGTcount: A:0.21, C:0.14, G:0.06, T:0.59
Consensus pattern (41 bp):
CAAATTTTGAATTATTTTTCTTTTCCTTTTTTCTTTAAGCT
Found at i:2263029 original size:43 final size:43
Alignment explanation
Indices: 2262968--2263064 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
2262958 TTAACTCATC
*
2262968 TTTTCTTCTTTTCCCTTTCTGAGGC-AAAATTTTGGAATTATTT
1 TTTTCTTCTTTTCCCTTTCT-AAGCTAAAATTTTGGAATTATTT
* * *
2263011 TTTTCTTTTTTTTCCTTTCTAAGCTCAAATTTTGGAATTATTT
1 TTTTCTTCTTTTCCCTTTCTAAGCTAAAATTTTGGAATTATTT
2263054 TTCTT-TTCTTT
1 TT-TTCTTCTTT
2263065 CTTTTTCCGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 3 0.06
43 42 0.89
44 2 0.04
ACGTcount: A:0.16, C:0.15, G:0.08, T:0.60
Consensus pattern (43 bp):
TTTTCTTCTTTTCCCTTTCTAAGCTAAAATTTTGGAATTATTT
Found at i:2263121 original size:36 final size:36
Alignment explanation
Indices: 2263066--2263149 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 36
2263056 CTTTTCTTTC
*
2263066 TTTTTCCGTCTTTTTCCTTAACTCTAATTTTAGAATT-
1 TTTTTCC-T-TTTTTCCTTAACTCAAATTTTAGAATTA
* * *
2263103 TTTTTCCTTTTTTCCCTTAGCTCAAATTTTGGTATTA
1 TTTTTCCTTTTTT-CCTTAACTCAAATTTTAGAATTA
2263140 TTTTT-CTTTT
1 TTTTTCCTTTT
2263150 CTTTTTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 5 0.12
36 24 0.59
37 12 0.29
ACGTcount: A:0.15, C:0.18, G:0.06, T:0.61
Consensus pattern (36 bp):
TTTTTCCTTTTTTCCTTAACTCAAATTTTAGAATTA
Found at i:2263193 original size:61 final size:62
Alignment explanation
Indices: 2263127--2263242 Score: 173
Period size: 61 Copynumber: 1.9 Consensus size: 62
2263117 CCTTAGCTCA
* * *
2263127 AATTTTGGTATTATTTTTCTTTTCTTTT-TTTC-TTTTTTAATCCTTAGCTCATCTCGGCCCG
1 AATTTTGGAATTATTTTTCTTTTCTTTTATTCCATTTTTT-ATCCTTAACTCATCTCGGCCCG
*
2263188 AATTTTGGAATTATTTTTCTTTTCTTTTATTCCATTTTTTTTCCTTAACTCATCT
1 AATTTTGGAATTATTTTTCTTTTCTTTTATTCCATTTTTTATCCTTAACTCATCT
2263243 TTTGGTCCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
61 27 0.55
62 16 0.33
63 6 0.12
ACGTcount: A:0.16, C:0.18, G:0.07, T:0.59
Consensus pattern (62 bp):
AATTTTGGAATTATTTTTCTTTTCTTTTATTCCATTTTTTATCCTTAACTCATCTCGGCCCG
Found at i:2263562 original size:145 final size:145
Alignment explanation
Indices: 2263336--2263599 Score: 388
Period size: 145 Copynumber: 1.8 Consensus size: 145
2263326 CACTAAGAAA
*
2263336 AATTGCATATGAAATATGAATTGTAACATTTTGAACTTGATATTAGGCAAGATCCATGTTTACAA
1 AATTGCATATGAAATATGAATTGTAACATTTTAAACTTGATATTAGGCAAGATCCATGTTTACAA
* * * *
2263401 AGTGTTTCAGCTCTTTTAGAATTATGCCAA-TTAATGTTAAAGGCAAAAAAATCAGTTGTGTATA
66 AGTGTTTCAACTCTTTTAGAACTATG-CAAGTTAATATTAAAGACAAAAAAATCAGTTGTGTATA
2263465 TTCTTCTAGATCATTT
130 TTCTTCTAGATCATTT
* * * *
2263481 AATTGCATATGAAATATGAATTAG-AGCATTTTAAACTTGATATTAGGTAAGATCTATGTTTGCA
1 AATTGCATATGAAATATGAATT-GTAACATTTTAAACTTGATATTAGGCAAGATCCATGTTTACA
* * *
2263545 AAGTGTTTGAACTCTTTTAGAGCTATGCAAGTTAATATTAAAGACAGAAAAATCA
65 AAGTGTTTCAACTCTTTTAGAACTATGCAAGTTAATATTAAAGACAAAAAAATCA
2263600 ATTCTATATC
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
144 3 0.03
145 101 0.96
146 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (145 bp):
AATTGCATATGAAATATGAATTGTAACATTTTAAACTTGATATTAGGCAAGATCCATGTTTACAA
AGTGTTTCAACTCTTTTAGAACTATGCAAGTTAATATTAAAGACAAAAAAATCAGTTGTGTATAT
TCTTCTAGATCATTT
Found at i:2269068 original size:22 final size:22
Alignment explanation
Indices: 2269026--2269068 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
2269016 TCTCAACTAT
*
2269026 TTTAAAATTTAAATTCAAATTA
1 TTTAAAATTAAAATTCAAATTA
*
2269048 TTTAAAA-TAAAACTTCTAATT
1 TTTAAAATTAAAA-TTCAAATT
2269069 TTAATAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (22 bp):
TTTAAAATTAAAATTCAAATTA
Found at i:2273132 original size:3 final size:3
Alignment explanation
Indices: 2273124--2273153 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
2273114 TTGTGAACAG
*
2273124 GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
2273154 ATCGATGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:2273145 original size:15 final size:15
Alignment explanation
Indices: 2273125--2273154 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2273115 TGTGAACAGG
2273125 AAGAAGAAGAAGAAA
1 AAGAAGAAGAAGAAA
2273140 AAGAAGAAGAAGAAA
1 AAGAAGAAGAAGAAA
2273155 TCGATGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAGAAA
Found at i:2274387 original size:13 final size:13
Alignment explanation
Indices: 2274366--2274398 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
2274356 AGACTCAGCG
2274366 TTAAGTTTTTT-TT
1 TTAA-TTTTTTCTT
2274379 TTAATTTTTTCTT
1 TTAATTTTTTCTT
2274392 TTAATTT
1 TTAATTT
2274399 ATATTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (13 bp):
TTAATTTTTTCTT
Found at i:2274411 original size:18 final size:17
Alignment explanation
Indices: 2274390--2274423 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
2274380 TAATTTTTTC
2274390 TTTTAATTTATATTATTA
1 TTTTAATTTAT-TTATTA
*
2274408 TTTTTATTTATTTATT
1 TTTTAATTTATTTATT
2274424 TCTAGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTAATTTATTTATTA
Found at i:2277692 original size:58 final size:58
Alignment explanation
Indices: 2277601--2277712 Score: 172
Period size: 58 Copynumber: 1.9 Consensus size: 58
2277591 ATATATGTAT
* * * *
2277601 ATATTTGAAAAGCATGGTATGTATTCATTAATATTGCCAA-AAATGGCTAAAGACGTGC
1 ATATTTGAAAAACATGGTATGTATCCATCAATATTGCCAAGAAA-GGCCAAAGACGTGC
2277659 ATATTTGAAAAACATGGTATGTATCCATCAATATTGCCAAGAAAGGCCAAAGAC
1 ATATTTGAAAAACATGGTATGTATCCATCAATATTGCCAAGAAAGGCCAAAGAC
2277713 TTACAGAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
58 46 0.94
59 3 0.06
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (58 bp):
ATATTTGAAAAACATGGTATGTATCCATCAATATTGCCAAGAAAGGCCAAAGACGTGC
Found at i:2278150 original size:20 final size:20
Alignment explanation
Indices: 2278117--2278159 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2278107 TTAAATTTCA
*
2278117 AAATTTTAAAATGTAATCTC
1 AAATTCTAAAATGTAATCTC
* *
2278137 AAATTCTAAGATGTCATCTC
1 AAATTCTAAAATGTAATCTC
2278157 AAA
1 AAA
2278160 ACATTAAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (20 bp):
AAATTCTAAAATGTAATCTC
Found at i:2280474 original size:226 final size:226
Alignment explanation
Indices: 2280079--2280531 Score: 744
Period size: 226 Copynumber: 2.0 Consensus size: 226
2280069 TTTATTGGGT
*
2280079 TTTGGGCTTGTTATGAATAAAAATGGTTTGGGGCTTTTTTTATTCTGTGTGTGTGCTATATTTTT
1 TTTGGGCTTGTTATAAATAAAAATGGTTTGGGGCTTTTTTTATTCTGTGTGTGTGCTATATTTTT
* ** *
2280144 CTTTTATTTTTTAAATATTTGTCAATATAAATATTATTAATGTTATAAAATAAATCTTAAGAGAA
66 CCTCCATTTTTTAAATATTTGTCAATACAAATATTATTAATGTTATAAAATAAATCTTAAGAGAA
* ** * *
2280209 CAATTATAAAAAAAATATAAAATAAAATTTTTTAAAAGAGAGAAAGTATTTAAAGGAGTAAAAAA
131 CAACTATAAAAAAAATATAAAATAAAATACTTAAAAAGAGAGAAAGTATTTAAAAGAGTAAAAAA
2280274 ATCTTATTCAAGTGTGTATCTACAAATAAAG
196 ATCTTATTCAAGTGTGTATCTACAAATAAAG
* *
2280305 TTTGGGCTTGTTATAAATAAAAATGGTTTTGGGCTTTTTTTATTTTGTGTGTGTGCTATATTTTT
1 TTTGGGCTTGTTATAAATAAAAATGGTTTGGGGCTTTTTTTATTCTGTGTGTGTGCTATATTTTT
2280370 CCTCCATTTTTTAAATATTTGTCAATACAAATATTATTAATGTTATAAAATAAATCTTAAGAGAA
66 CCTCCATTTTTTAAATATTTGTCAATACAAATATTATTAATGTTATAAAATAAATCTTAAGAGAA
* * *
2280435 CAACTGTAAAAAAAATATAAAATAAAGTACTTAAAAAGAGAGAAAGTATTTAAAAGAGTAAGAAA
131 CAACTATAAAAAAAATATAAAATAAAATACTTAAAAAGAGAGAAAGTATTTAAAAGAGTAAAAAA
* * *
2280500 TTCTTATTCAAGTGTGTATGTACAAATGAAG
196 ATCTTATTCAAGTGTGTATCTACAAATAAAG
2280531 T
1 T
2280532 AAAAAGGTCT
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
226 209 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (226 bp):
TTTGGGCTTGTTATAAATAAAAATGGTTTGGGGCTTTTTTTATTCTGTGTGTGTGCTATATTTTT
CCTCCATTTTTTAAATATTTGTCAATACAAATATTATTAATGTTATAAAATAAATCTTAAGAGAA
CAACTATAAAAAAAATATAAAATAAAATACTTAAAAAGAGAGAAAGTATTTAAAAGAGTAAAAAA
ATCTTATTCAAGTGTGTATCTACAAATAAAG
Done.