Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398165.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1469.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6527
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.23

Warning! 2200 characters in sequence are not A, C, G, or T


Found at i:1084 original size:171 final size:168

Alignment explanation


    Indices: 601--1158  Score: 500
    Period size: 171  Copynumber: 3.3  Consensus size: 168

        591 NNNNNNNATA

                            *  *        * *         *         *              
        601 TAAAACAATTCAACTTGAAGTCAATTATAATATTATAAAATCATTTAAAGTGAGTAATAAGA-TG
          1 TAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACT-

                             * *           *     *          **          *    
        665 TTTGAA-AGAATGAGTGGCTATAAATGGACTGTTCTTATCAATGAATGCCTGTTTCTTCATGTTT
         65 TTTGAAGA-AATGAGTGACAATAAATGGACTTTTCTTCTCAATGAATGGAT-TTTCTTCAAGTTT

                            *                *          
        729 CTCAA-AGTAGACATTTAATTATAAACTGTTTTGACTAAAAATG
        128 CT-AAGA-TAGACATTCAATTAT-AACTGTTTTAACTAAAAATG

                 *         *     *   *     *                   *    *    *   
        772 TAAAAAAATTCAACTAAAAATTAATGATGAGTTTATAAAACCATTTAAAGCTAGTACTAAGGCTT
          1 TAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTT

             *    ***        *                 *       *                 *   
        837 TCGAAGGCTTGAGTGACGATAAATGGACTTTTCGTGC-CAATGGAT-GACTTTTGCTTC-ACTTT
         66 TTGAAGAAATGAGTGACAATAAATGGACTTTTC-TTCTCAATGAATGGA-TTTT-CTTCAAGTTT

               *   *        *        *  *       *       
        899 CCCCAAGGTAGACATTGAATTATAGCCTTTTTTAACCAAAAATG
        128 --CTAAGATAGACATTCAATTATA-ACTGTTTTAACTAAAAATG

                            *                   *                            
        943 TAAAACAATTCAACTTGAAATCAATTATGAGATTATTAAACCATTTAAAGCGAGTAATAAGACTT
          1 TAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTT

                         *          *  *                           *         
       1008 TTGAAGAAATGAGAGACAATAAATAGATTTTTCTTCTCAATGAATGGATTTTCCTACAAGTTTCT
         66 TTGAAGAAATGAGTGACAATAAATGGACTTTTCTTCTCAATGAATGGATTTT-CTTCAAGTTTC-

             **                   *           *      
       1073 TGTGATAGACATTCAATTATTATCTGTTTTAACTTAAAATG
        129 TAAGATAGACATTCAATTA-TAACTGTTTTAACTAAAAATG

                                      *                   
       1114 TAAAA-AATTCAACTTAAAATCAATTTTGAGATTATAAAACCATTT
          1 TAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT

       1159 NNNNNNNNNN


Statistics
Matches: 303,  Mismatches: 70, Indels: 29
        0.75            0.17        0.07

Matches are distributed among these distances:
 170   47  0.16
 171  245  0.81
 172   11  0.04

ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35


Consensus pattern (168 bp):   
TAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTT
TTGAAGAAATGAGTGACAATAAATGGACTTTTCTTCTCAATGAATGGATTTTCTTCAAGTTTCTA
AGATAGACATTCAATTATAACTGTTTTAACTAAAAATG
Done.