Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398172.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1477.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1590
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.24

Warning! 560 characters in sequence are not A, C, G, or T


Found at i:1486 original size:172 final size:162

Alignment explanation


    Indices: 1261--1590  Score: 290
    Period size: 172  Copynumber: 2.0  Consensus size: 162

       1251 AAAATCTCAA

                           *                    * *   *   *            **    
       1261 AATTGATTTTAATTTGATTTCTTTGTACATTTTTTGTTTAAATAGATTATAATTGAAAGTGTACA
          1 AATTGATTTTAATTTAATTTCTTTGTACATTTTTTGATAAAACAGACTATAATTGAAAGCCTACA

                     *   *  *              * *          **                   
       1326 TT-GAGAAATATGGAGGAAAAGACATTCAATGGGAAGAAAAGTCTGTTTATAGTCTCCCATT-CT
         66 TTAG-GAAACATGAAGAAAAAGACATTCAATAGCAAGAAAAGTCAATTTATAGTCTCCCATTCCT

                     *   *                              
       1389 TTCAAAAGCTTTATTACTCGCTTTAAATGGNNNNNNNNNNTCAT
        130 TT-AAAAGCCTTAATACTCGCTTTAAATGG----------TCAT

                                     *                                 *    *
       1433 AATTGATTTTAAGTTTAATTT-TTTTTACA-TTTTTGAATAAAACAGACTATAATTGAATGCCTG
          1 AATTGATTTTAA-TTTAATTTCTTTGTACATTTTTTG-ATAAAACAGACTATAATTGAAAGCCTA

             *                            *        **                        
       1496 CCTTAGGAAACATGAAGAAAAAGACATTCATTAGCAAGACTAGTCAATTTATAGTCTCCCATTCC
         64 CATTAGGAAACATGAAGAAAAAGACATTCAATAGCAAGAAAAGTCAATTTATAGTCTCCCATTCC

                               *          
       1561 TTTAAAAGCCTTAATACTCTCTTTAAATGG
        129 TTTAAAAGCCTTAATACTCGCTTTAAATGG


Statistics
Matches: 130,  Mismatches: 24, Indels: 8
        0.80            0.15        0.05

Matches are distributed among these distances:
 171    6  0.05
 172  112  0.86
 173   12  0.09

ACGTcount: A:0.34, C:0.12, G:0.14, T:0.37


Consensus pattern (162 bp):   
AATTGATTTTAATTTAATTTCTTTGTACATTTTTTGATAAAACAGACTATAATTGAAAGCCTACA
TTAGGAAACATGAAGAAAAAGACATTCAATAGCAAGAAAAGTCAATTTATAGTCTCCCATTCCTT
TAAAAGCCTTAATACTCGCTTTAAATGGTCAT
Done.