Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397345.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1229.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46291

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--580
171
3.3
168
81
4
597
34
14
11
39
1.82
479--689
109
1.9
109
84
5
284
36
16
10
36
1.83
605--2437
171
10.8
170
76
6
1205
33
13
12
38
1.83
584--2435
513
3.6
513
75
5
1335
34
13
12
38
1.83
5893--7129
170
7.3
168
73
6
652
37
12
13
33
1.83
6588--6913
169
2.0
161
79
10
347
35
11
14
34
1.83
13058--13114
29
2.0
29
92
0
96
36
19
8
35
1.83
27552--27594
17
2.7
17
79
17
56
25
6
13
53
1.65
31387--31647
132
2.0
132
93
0
441
33
19
15
32
1.93
32034--32081
19
2.5
19
80
6
53
25
0
4
70
1.04
33029--33096
33
2.1
32
83
10
84
2
42
13
41
1.59
33160--33226
35
2.0
34
88
8
102
2
40
14
41
1.62
33058--33299
129
1.9
130
90
0
387
4
41
9
44
1.57
33160--33237
33
2.4
33
81
10
90
2
41
12
43
1.56
33096--33311
65
3.3
64
66
19
160
4
40
9
46
1.55
36142--36224
17
5.2
16
70
21
68
60
0
39
0
0.97
36141--36176
18
2.1
17
89
5
54
66
0
33
0
0.92

Tables:   1

The End!