Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398175.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_148.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6192
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.18

Warning! 2936 characters in sequence are not A, C, G, or T


Found at i:176 original size:14 final size:15

Alignment explanation


    Indices: 151--183  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        141 TATATGTAAA

                           
        151 AAATTCATATCACCT
          1 AAATTCATATCACCT

                         * 
        166 AAATT-ATATCACTT
          1 AAATTCATATCACCT

                
        180 AAAT
          1 AAAT

        184 AATCTGATTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14   12  0.71
  15    5  0.29

ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36


Consensus pattern (15 bp):   
AAATTCATATCACCT

Found at i:5358 original size:31 final size:29

Alignment explanation


    Indices: 5317--5374  Score: 89
    Period size: 29  Copynumber: 1.9  Consensus size: 29

       5307 CAGTCAAGAT

                                           
       5317 TTTCTGGGTTTTTCTTCATAAAAAGCAAATG
          1 TTTCTGGG--TTTCTTCATAAAAAGCAAATG

                 *                     
       5348 TTTCTTGGTTTCTTCATAAAAAGCAAA
          1 TTTCTGGGTTTCTTCATAAAAAGCAAA

       5375 CCTTTTACAT


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  29   19  0.73
  31    7  0.27

ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41


Consensus pattern (29 bp):   
TTTCTGGGTTTCTTCATAAAAAGCAAATG
Done.