Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398194.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1498.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5352
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.20

Warning! 2529 characters in sequence are not A, C, G, or T


Found at i:2997 original size:16 final size:18

Alignment explanation


    Indices: 2955--2999  Score: 51
    Period size: 16  Copynumber: 2.6  Consensus size: 18

       2945 GTTAAAATGA

                     *         
       2955 TTTTATAATCTCATAATTG
          1 TTTTATAATTTCA-AATTG

                              
       2974 TTTT-TAATTTC-AATT-
          1 TTTTATAATTTCAAATTG

                       
       2989 TTTTATAATTT
          1 TTTTATAATTT

       3000 TTATTAAAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 5
        0.80            0.03        0.17

Matches are distributed among these distances:
  15    4  0.17
  16   10  0.42
  18    6  0.25
  19    4  0.17

ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62


Consensus pattern (18 bp):   
TTTTATAATTTCAAATTG
Done.