Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398196.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_15.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2227
ACGTcount: A:0.25, C:0.08, G:0.09, T:0.24

Warning! 757 characters in sequence are not A, C, G, or T


Found at i:1457 original size:173 final size:171

Alignment explanation


    Indices: 1099--1490  Score: 439
    Period size: 173  Copynumber: 2.3  Consensus size: 171

       1089 CTCTTGCCAA

                   *             *          *   *                            
       1099 TGGATATGTTTTTCTTCATGTCTCTCAAGGTAGACAATCAATTATAATATGTTTTAATTAAAAAT
          1 TGGATATCTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAATTAAAAAT

                                      * *      *                          *  
       1164 ATAAAAAAGTTCAACTTAAAAATAATTATAAGATTGAAAAACTATTTAAAGCGAGTAATAAGGCT
         66 ATAAAAAAGTTCAACTTAAAAATAATGACAAGATTAAAAAACTATTTAAAGCGAGTAATAAGCCT

              *                      *          *  **
       1229 TTTAAAGGTATAGGTGACTACAAATGGACCTGTTTTGCCNN
        131 TTCAAAGGTATAGGTGACTACAAATAGACCTGTTTTACCAG

            ********                  *                                      
       1270 NNNNNNNNTTTTTCTTCATGTTTCTCGAGGTAAACATTCAAAATTATAAT-TGATTTTAATTAAA
          1 TGGATATCTTTTTCTTCATGTTTCTCAAGGTAAACATTC--AATTATAATATG-TTTTAATTAAA

                                    *       *                                
       1334 AATATAAAAAAGTTCAACTTAAAACTAATGACGAGATTAAAAAAAC-ATTTAAAGCGAGTAATAA
         63 AATATAAAAAAGTTCAACTTAAAAATAATGACAAGATT-AAAAAACTATTTAAAGCGAGTAATAA

                   *       *        *          *       *  
       1398 GCCTTTCGAAGGTATGGGTGACTATAAATAGA-CTTTTGTTACTAG
        127 GCCTTTCAAAGGTATAGGTGACTACAAATAGACCTGTT-TTACCAG

                              *           *                 
       1443 TGGATATCTTTTTCTTCACGTTTCTCAAGGAAAACATTCAATTATAAT
          1 TGGATATCTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAAT

       1491 CTATTTNNNN


Statistics
Matches: 177,  Mismatches: 39, Indels: 10
        0.78            0.17        0.04

Matches are distributed among these distances:
 171   36  0.20
 172    6  0.03
 173  129  0.73
 174    6  0.03

ACGTcount: A:0.38, C:0.11, G:0.14, T:0.35


Consensus pattern (171 bp):   
TGGATATCTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAATTAAAAAT
ATAAAAAAGTTCAACTTAAAAATAATGACAAGATTAAAAAACTATTTAAAGCGAGTAATAAGCCT
TTCAAAGGTATAGGTGACTACAAATAGACCTGTTTTACCAG
Done.