Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398203.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1506.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1695
ACGTcount: A:0.27, C:0.08, G:0.09, T:0.26

Warning! 501 characters in sequence are not A, C, G, or T


Found at i:298 original size:171 final size:170

Alignment explanation


    Indices: 116--568  Score: 399
    Period size: 171  Copynumber: 2.6  Consensus size: 170

        106 NNNNNNNNNN

                                 *   *                     *              *  
        116 ACCATTTAAAATGAGTAATAAGGCTGTTGAAGGAATAGGAGGCTATAGATACACTTTTCTTGCCA
          1 ACCATTTAAAATGAGTAATAAAGCTATTGAAGGAATAGGAGGCTATAAATA-ACTTTTCTTGACA

             *           *      **                                         * 
        181 AAGAATGCTTTTTTCTTCACTTTTATCAATGG-AGACATTCAATTATAGTCTATTTTAAAGAAGA
         65 ATGAATGCTTTTTACTTCACGATTATCAA-GGCAGACATTCAATTATAGTCTATTTTAAAGAAAA

              *          *        * *                 
        245 ATGTAAAAAAATTGAACTTAAATTTAATTATGAGATTATAAA
        129 ATATAAAAAAATTCAACTTAAACTAAATTATGAGATTATAAA

             **           *   *   *     *                  *********   *     
        287 ATTATTTAAAATGAATAAAAAAACTATTAAAGGAAT-GAGAGGCTANNNNNNNNNNTTTATT-AT
          1 ACCATTTAAAATGAGTAATAAAGCTATTGAAGGAATAG-GAGGCTA-TAAATAACTTTTCTTGA-

                                      *                                 *    
        350 CAATGAATGCTTTTTACTTCACGATTGTCAAGGCAGACATTCAATTATAGTCTATTTTAACGAAA
         63 CAATGAATGCTTTTTACTTCACGATTATCAAGGCAGACATTCAATTATAGTCTATTTTAAAGAAA

                                          *   *        
        415 AATATAAAAAAATTCAACTTAAACTAAATTGTGATATTATAAA
        128 AATATAAAAAAATTCAACTTAAACTAAATTATGAGATTATAAA

                      ** *           *    *        * *                     * 
        458 ACCATTTAAAGCGTGTAATAAAGCTTTTGAGGGAATAGGTGACTATAAATGAACTTTTCTTGATA
          1 ACCATTTAAAATGAGTAATAAAGCTATTGAAGGAATAGGAGGCTATAAAT-AACTTTTCTTGACA

                         *     * *  *     ** *            
        523 ATGAATGCTTTTTCCTTCATGTTTCTCAAGATAAACATTCAATTAT
         65 ATGAATGCTTTTTACTTCACGATTATCAAGGCAGACATTCAATTAT

        569 TATCTGTTTT


Statistics
Matches: 212,  Mismatches: 63, Indels: 14
        0.73            0.22        0.05

Matches are distributed among these distances:
 170    3  0.01
 171  207  0.98
 172    2  0.01

ACGTcount: A:0.39, C:0.11, G:0.13, T:0.35


Consensus pattern (170 bp):   
ACCATTTAAAATGAGTAATAAAGCTATTGAAGGAATAGGAGGCTATAAATAACTTTTCTTGACAA
TGAATGCTTTTTACTTCACGATTATCAAGGCAGACATTCAATTATAGTCTATTTTAAAGAAAAAT
ATAAAAAAATTCAACTTAAACTAAATTATGAGATTATAAA
Done.