Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398227.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1532.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7986
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.19

Warning! 3636 characters in sequence are not A, C, G, or T


Found at i:6413 original size:169 final size:171

Alignment explanation


    Indices: 6040--6424  Score: 438
    Period size: 169  Copynumber: 2.3  Consensus size: 171

       6030 TTAAAAGCGG

                    *                      *             *            * *    
       6040 GTAATAAGCCTTTTGAAGGAATGGGTGACTAAAAATGGACTTTTTTTTCTCAATAAATGGCTTTT
          1 GTAATAAGACTTTTGAAGGAATGGGTGACTATAAATGGAC-TTTTCTTCTCAATAAATAGATTTT

                *                  *                  *                      
       6105 TCTATACCTTTCATGAGGTAGACTTTCAATTATAGTCTGTTTGACAGAAAAATATAAAAAAATTC
         65 TCTACACCTTTCATGAGGTAGACATTCAATTATAGTCTGTTTAACAGAAAAATATAAAAAAATTC

                *            *           *        *  *
       6170 AACTTAAAATCAAATATGAGATTATTAAACCATTTAAAGCGG
        130 AACTAAAAATCAAATATCAGATTATTAAAACATTTAAACCGA

               *  *                *                         *   *           
       6212 GTAGTAGGACTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTCTTAATGAATAGATTTTT
          1 GTAATAAGACTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATAAATAGATTTTT

            * *  **                           *     *              *      *  
       6277 TTGCATGTTTC-TCGAGGTA-AGCATTCAATTATTGTCTATTTTAACA-AAAAATGT-AAAACAT
         66 CTACACCTTTCAT-GAGGTAGA-CATTCAATTATAGTCT-GTTTAACAGAAAAATATAAAAAAAT

                           *                 *          
       6338 TCAACTAAAAATCAATTATCAGATTA-TAAAACTTTTAAACCGA
        128 TCAACTAAAAATCAAATATCAGATTATTAAAACATTTAAACCGA

                    *                                   
       6381 GTAATAAGTCTTTTGAAGGAATGGGTGACTATAAATGGACTTTT
          1 GTAATAAGACTTTTGAAGGAATGGGTGACTATAAATGGACTTTT

       6425 NNNNNNNNNN


Statistics
Matches: 178,  Mismatches: 32, Indels: 9
        0.81            0.15        0.04

Matches are distributed among these distances:
 169   53  0.30
 170   31  0.17
 171   53  0.30
 172   41  0.23

ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36


Consensus pattern (171 bp):   
GTAATAAGACTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATAAATAGATTTTT
CTACACCTTTCATGAGGTAGACATTCAATTATAGTCTGTTTAACAGAAAAATATAAAAAAATTCA
ACTAAAAATCAAATATCAGATTATTAAAACATTTAAACCGA
Done.