Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398234.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1538.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 933

Length: 1555
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.20

Warning! 734 characters in sequence are not A, C, G, or T


Found at i:1487 original size:21 final size:21

Alignment explanation


    Indices: 1446--1488  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1436 NNNAGTAACA

                        *        
       1446 TAAAGAAAAAGCTATTCATAG
          1 TAAAGAAAAAGCCATTCATAG

                             *    
       1467 TAAAG-AAAAGTCCATTTATAG
          1 TAAAGAAAAAG-CCATTCATAG

             
       1488 T
          1 T

       1489 CATCAATTCC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  20    5  0.26
  21   14  0.74

ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28


Consensus pattern (21 bp):   
TAAAGAAAAAGCCATTCATAG
Done.