Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398242.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1545.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19390
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.23

Warning! 5661 characters in sequence are not A, C, G, or T


Found at i:5411 original size:15 final size:16

Alignment explanation


    Indices: 5381--5418  Score: 51
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       5371 TTGTTGTAGA

                   *        
       5381 TTTTTCTTTATCTTTC
          1 TTTTTCTCTATCTTTC

                            
       5397 TTTTTCTCTAT-TTTC
          1 TTTTTCTCTATCTTTC

             *     
       5412 TGTTTCT
          1 TTTTTCT

       5419 TCACAACCAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  15   10  0.50
  16   10  0.50

ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74


Consensus pattern (16 bp):   
TTTTTCTCTATCTTTC

Found at i:18652 original size:35 final size:35

Alignment explanation


    Indices: 18613--18695  Score: 94
    Period size: 35  Copynumber: 2.4  Consensus size: 35

      18603 TTGATCTCGA

                  *              *           * 
      18613 GAAAAATCATTATTGAAGGTTGTGGCTGAACCTTT
          1 GAAAAACCATTATTGAAGGTTATGGCTGAACCTAT

                 *     *             *   *     
      18648 GAAAAGCCATTGTTGAAGGTTATGGGTGAGCCTAT
          1 GAAAAACCATTATTGAAGGTTATGGCTGAACCTAT

                 *       
      18683 GAAAAGCCATTAT
          1 GAAAAACCATTAT

      18696 AAAAGCTTGG


Statistics
Matches: 40,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  35   40  1.00

ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30


Consensus pattern (35 bp):   
GAAAAACCATTATTGAAGGTTATGGCTGAACCTAT
Done.