Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398249.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1551.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9540
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.22

Warning! 4004 characters in sequence are not A, C, G, or T


Found at i:3361 original size:171 final size:171

Alignment explanation


    Indices: 3076--3426  Score: 420
    Period size: 171  Copynumber: 2.1  Consensus size: 171

       3066 NNTTTTCTAG

                        *                                 *                  
       3076 TCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAATTAGGATATAATTGAATGT
          1 TCTCATAATTGAATTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGGATATAATTGAATGT

              *    * *                *          *  *                   *  **
       3141 CTGCCTCGAGAACCATGAAAAAAAAATCATTCATTGATAATAAAAGTCTATTCACAGCCTTCCGG
         66 CTACCTCAAAAACCATGAAAAAAAAAGCATTCATTGACAAGAAAAGTCTATTCACAGCCTGCCAC

                    *      *       *                  
       3206 TCCTTCAATAGCCTTTTTACTC-GTTCTAAATGGTTTTATAA
        131 TCCTTCAAAAGCCTTATTACTCACTT-TAAATGGTTTTATAA

                                 *          *                                
       3247 TCTCATAATTGAATTTAAGTTTAATTTTTTTATA-TTTTTGTTTAAAATAGGCA-ATAATTGAAT
          1 TCTCATAATTGAATTTAAGTTGAATTTTTTTACATTTTTTG-TTAAAATAGG-ATATAATTGAAT

                 **       ***    *                *               * *        
       3310 GTCTATTTCAAAAAGTGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCTATTTATAGCCTGCC
         64 GTCTACCTCAAAAACCATGAAAAAAAAAGCATTCATTGACAAGAAAAGTCTATTCACAGCCTGCC

                                                       
       3375 ACTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAA
        129 ACTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAA

             *       
       3418 TGTCATAAT
          1 TCTCATAAT

       3427 NNNNNNNNNN


Statistics
Matches: 151,  Mismatches: 26, Indels: 6
        0.83            0.14        0.03

Matches are distributed among these distances:
 170    6  0.04
 171  142  0.94
 172    3  0.02

ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40


Consensus pattern (171 bp):   
TCTCATAATTGAATTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGGATATAATTGAATGT
CTACCTCAAAAACCATGAAAAAAAAAGCATTCATTGACAAGAAAAGTCTATTCACAGCCTGCCAC
TCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAA
Done.