Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000001.1 Hibiscus syriacus cultivar Beakdansim tig00000002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2159989
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 8
Found at i:2041094 original size:20 final size:20
Alignment explanation
Indices: 2041065--2041103 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2041055 AGAGCTTATA
*
2041065 TAGGATCATATAGATGCATT
1 TAGGAACATATAGATGCATT
*
2041085 TAGGAACATATAGTTGCAT
1 TAGGAACATATAGATGCAT
2041104 GTGGTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
TAGGAACATATAGATGCATT
Found at i:2046740 original size:3 final size:3
Alignment explanation
Indices: 2046732--2046773 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
2046722 AGGGAAGAGA
2046732 AAG AAG AAG AAG AAG AAG AAAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AA
2046774 TGAGGACGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:2046753 original size:19 final size:19
Alignment explanation
Indices: 2046725--2046770 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
2046715 GAGAGAAAGG
2046725 GAAG-AGAAAGAAGAAGAA
1 GAAGAAGAAAGAAGAAGAA
2046743 GAAGAAGAAAGAAGAAGAA
1 GAAGAAGAAAGAAGAAGAA
2046762 GAAGAAGAA
1 GAAGAAGAA
2046771 GAATGAGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (19 bp):
GAAGAAGAAAGAAGAAGAA
Found at i:2048660 original size:21 final size:20
Alignment explanation
Indices: 2048577--2048655 Score: 122
Period size: 20 Copynumber: 3.9 Consensus size: 20
2048567 ATCAGATTGT
2048577 CCAGGGGGTACCGATTCCCC
1 CCAGGGGGTACCGATTCCCC
2048597 CCAGGGGGTACCGATTCCCC
1 CCAGGGGGTACCGATTCCCC
* * *
2048617 CCAAGGGGAACAGATTCCCC
1 CCAGGGGGTACCGATTCCCC
2048637 CCTAGGGGGTACCGATTCC
1 CC-AGGGGGTACCGATTCC
2048656 TCCCTGTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 39 0.75
21 13 0.25
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.15
Consensus pattern (20 bp):
CCAGGGGGTACCGATTCCCC
Found at i:2049046 original size:34 final size:32
Alignment explanation
Indices: 2049007--2049076 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
2048997 TTTTGTAAAG
*
2049007 GGGAAAGGTTCTAGCTAATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTAAGCCCG-GTAAAA-CTA
* *
2049041 GGGAAAGGTTCTAGTTTAGCCCGGTAAAACTA
1 GGGAAAGGTTCTAGCTAAGCCCGGTAAAACTA
2049073 GGGA
1 GGGA
2049077 GTTTGTAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 6 0.18
34 20 0.61
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTAAGCCCGGTAAAACTA
Found at i:2054843 original size:82 final size:82
Alignment explanation
Indices: 2054717--2054880 Score: 328
Period size: 82 Copynumber: 2.0 Consensus size: 82
2054707 TGATTCATTG
2054717 AAAGCTTGTGATGTGGTCTATTTGATAAATAAATTTTTAGAAAAAAATTAGAGATATGCCATGGA
1 AAAGCTTGTGATGTGGTCTATTTGATAAATAAATTTTTAGAAAAAAATTAGAGATATGCCATGGA
2054782 TGTTGAGATTCTCTGAT
66 TGTTGAGATTCTCTGAT
2054799 AAAGCTTGTGATGTGGTCTATTTGATAAATAAATTTTTAGAAAAAAATTAGAGATATGCCATGGA
1 AAAGCTTGTGATGTGGTCTATTTGATAAATAAATTTTTAGAAAAAAATTAGAGATATGCCATGGA
2054864 TGTTGAGATTCTCTGAT
66 TGTTGAGATTCTCTGAT
2054881 CTTATTAGTG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (82 bp):
AAAGCTTGTGATGTGGTCTATTTGATAAATAAATTTTTAGAAAAAAATTAGAGATATGCCATGGA
TGTTGAGATTCTCTGAT
Found at i:2058009 original size:22 final size:22
Alignment explanation
Indices: 2057984--2058032 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
2057974 ACACTTTACA
2057984 ATAACCATTACCTATTAC-TTAT
1 ATAACCA-TACCTATTACATTAT
*
2058006 ATAAACGATACCTATTACATTAT
1 AT-AACCATACCTATTACATTAT
2058029 ATAA
1 ATAA
2058033 GGGCTACCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (22 bp):
ATAACCATACCTATTACATTAT
Found at i:2058032 original size:23 final size:23
Alignment explanation
Indices: 2057992--2058053 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
2057982 CAATAACCAT
2057992 TACCTATTAC-TTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
2058014 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
2058037 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2058054 GTTTACCTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 10 0.29
23 25 0.71
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2058440 original size:21 final size:21
Alignment explanation
Indices: 2058414--2058466 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
2058404 AATATACCAT
2058414 TACCTATTACATTATAAACGA
1 TACCTATTACATTATAAACGA
** *
2058435 TACCTATTACA-TATAAGGGC
1 TACCTATTACATTATAAACGA
2058455 TACCTATTACAT
1 TACCTATTACAT
2058467 CATATGTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (21 bp):
TACCTATTACATTATAAACGA
Found at i:2059747 original size:3 final size:3
Alignment explanation
Indices: 2059739--2060512 Score: 962
Period size: 3 Copynumber: 262.0 Consensus size: 3
2059729 ACTTAGAATT
2059739 AGA AGA AGA AGA AGA AGA AG- AGA AGA AGA AGA AG- AGA AGA AGA A-A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
2059784 AGA AGA AGA AGA AGA AGA AGAA AGA AGA AGA CG- AGA AG- AGA A-A
1 AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA
*
2059827 AGA AGA AGA AGA AGA AGA AGA GAGA AGA A-A A-A AAA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA AGA
2059871 AGA A-A AGA AGA AGA AGA AGA AGA GAGA AGA AGA AGAA AGA AGA AGAA
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AG-A AGA AGA AG-A
2059918 AGA AGA AGA AGA AGA AGA AGA AGA AGAA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA
*
2059964 AGA AGA AGA ATA AG- AGA A-A AG- AGA AG- AGA AGA AGAA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA
*
2060006 AGA A-T AGA AGA AG- AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* *
2060052 AGA AGA AGA AGA AGA GGA AGA AG- AGA GGA AGA AGA AGA AGA AGA A-A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
2060098 AGA AG- AGA AGA AGAA AGA AGA AGA A-A AGA AGA AGA GGA AGA AGAA
1 AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A
* * * *
2060143 AGA AGA GGA AGA AAA AGA AGA AGA GAGA GGA AGAA AGA GGA AGA AG-
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AG-A AGA AGA AGA AGA
* *
2060189 AGA AGA AGA AGA GGA AGA AGA AGA AGA AGA AGA AG- AGA AGA AGA GGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
2060236 AGA AGA AG- AGA GGA AGA AG- AGA AGA AGA AGA GAGA A-A GAGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA -AGA AGA
*
2060280 AGA AGA AG- AGA GGA AGA AGAA AGA AGGA AG- AGA AGA AGAA AGA AGAA
1 AGA AGA AGA AGA AGA AGA AG-A AGA A-GA AGA AGA AGA AG-A AGA AG-A
*
2060327 AGA AGGA AGA A-A AGA GGA AGA AGA AGA AGA AGA AGA AGA AG- AGA
1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
2060371 AGA AGA AGA AGA GGA AGA AGA AG- AGA AGA AG- AGA AGA AGAA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA
* * * *
2060415 AG- AGA AGA AGA AGA AGA GGA AGA AGA AGA GGA AGT AGA AGA GGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
2060462 AGA AGA GGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
2060510 AGA
1 AGA
2060513 CCTCAGGGGT
Statistics
Matches: 679, Mismatches: 43, Indels: 98
0.83 0.05 0.12
Matches are distributed among these distances:
2 59 0.09
3 565 0.83
4 55 0.08
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:2068966 original size:21 final size:20
Alignment explanation
Indices: 2068939--2069002 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
2068929 TTTTTCAAAG
2068939 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
*
2068959 AAATCATTT-TCAAA----G-
1 AAA-CATTTACCAAACTTTGA
2068974 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
2068994 AAACCATTT
1 AAA-CATTT
2069003 TTTCAAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 1 0.03
19 1 0.03
20 10 0.29
21 10 0.29
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (20 bp):
AAACATTTACCAAACTTTGA
Found at i:2068976 original size:35 final size:36
Alignment explanation
Indices: 2068889--2069010 Score: 176
Period size: 35 Copynumber: 3.4 Consensus size: 36
2068879 TTATCCCATT
* *
2068889 ATCATTTTTC-AACAAACATCTACCAAACTTTGAAA
1 ATCATTTTTCAAAGAAACATTTACCAAACTTTGAAA
*
2068924 AACTATTTTTCAAAGAAACATTTACCAAACTTTGAAA
1 ATC-ATTTTTCAAAGAAACATTTACCAAACTTTGAAA
2068961 ATCA-TTTTCAAAGAAACATTTACCAAACTTTGAAA
1 ATCATTTTTCAAAGAAACATTTACCAAACTTTGAAA
*
2068996 ACCATTTTTTCAAAG
1 ATCA-TTTTTCAAAG
2069011 TTGGTTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
35 36 0.46
36 8 0.10
37 34 0.44
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (36 bp):
ATCATTTTTCAAAGAAACATTTACCAAACTTTGAAA
Found at i:2073624 original size:35 final size:35
Alignment explanation
Indices: 2073529--2073655 Score: 145
Period size: 35 Copynumber: 3.7 Consensus size: 35
2073519 AACAAACATC
*
2073529 TACCAAACTTTGAAAAAC-TATTTTTCAAAGAAACATT
1 TACCAAACTTTGAAAACCAT-TTTTTCAAAG-AA-ATT
*
2073566 TACAAAACTTTGAAAACCA--TTTTCAAAGAAATT
1 TACCAAACTTTGAAAACCATTTTTTCAAAGAAATT
****
2073599 TACCAAACTTTGAAAACCATTTTTTCAAAGTTGGT
1 TACCAAACTTTGAAAACCATTTTTTCAAAGAAATT
2073634 TACCAAAC-TTGAAAACCATTTT
1 TACCAAACTTTGAAAACCATTTT
2073656 AATACTTTCA
Statistics
Matches: 80, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
33 21 0.26
34 16 0.20
35 27 0.34
37 16 0.20
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (35 bp):
TACCAAACTTTGAAAACCATTTTTTCAAAGAAATT
Found at i:2081722 original size:18 final size:18
Alignment explanation
Indices: 2081687--2081723 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2081677 GAGGTTTTTT
* *
2081687 ATTTAATATTTTATCTTA
1 ATTTAATATTTGAACTTA
2081705 ATTTAATATTTGAACTTA
1 ATTTAATATTTGAACTTA
2081723 A
1 A
2081724 CATTATATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTAATATTTGAACTTA
Found at i:2082367 original size:17 final size:18
Alignment explanation
Indices: 2082345--2082384 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
2082335 ATAGAATCTA
*
2082345 TTAATTTAATTC-TAATT
1 TTAATTTAATTCAAAATT
2082362 TTAATTTAATTCAAAATT
1 TTAATTTAATTCAAAATT
2082380 TTAAT
1 TTAAT
2082385 CCTCCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAATTTAATTCAAAATT
Found at i:2083418 original size:21 final size:22
Alignment explanation
Indices: 2083392--2083432 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
2083382 CCAGGACAGG
*
2083392 GAGTATCGGTACT-CCTTTAAT
1 GAGTATCGATACTACCTTTAAT
2083413 GAGTATCGATACTACCTTTA
1 GAGTATCGATACTACCTTTA
2083433 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (22 bp):
GAGTATCGATACTACCTTTAAT
Found at i:2087401 original size:24 final size:23
Alignment explanation
Indices: 2087369--2087442 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
2087359 TCGAGGGTTA
* *
2087369 TACGCGGTCCTTCTGGACAAATTC
1 TACGCGGTCCTTCGGGAC-ATTTC
2087393 TACGCGGTCCTTCGGGACATTTC
1 TACGCGGTCCTTCGGGACATTTC
* *
2087416 TATGTGGTCCTTCGGGACATTTC
1 TACGCGGTCCTTCGGGACATTTC
2087439 TACG
1 TACG
2087443 TGGCACTTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 28 0.62
24 17 0.38
ACGTcount: A:0.16, C:0.27, G:0.24, T:0.32
Consensus pattern (23 bp):
TACGCGGTCCTTCGGGACATTTC
Found at i:2087463 original size:24 final size:23
Alignment explanation
Indices: 2087436--2087492 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
2087426 TTCGGGACAT
2087436 TTCTACGTGGCACTTAGGTGCATA
1 TTCTACGTGGCACTTAGGTGCA-A
* * *
2087460 TTCTACGCGGCACTTCGGTGTAA
1 TTCTACGTGGCACTTAGGTGCAA
*
2087483 TTCTATGTGG
1 TTCTACGTGG
2087493 TAGTTTCGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (23 bp):
TTCTACGTGGCACTTAGGTGCAA
Found at i:2087825 original size:35 final size:35
Alignment explanation
Indices: 2087786--2087855 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
2087776 GTGATTAAAA
2087786 GCCTATTCTATTTATATGAAACATAAATTGATTAT
1 GCCTATTCTATTTATATGAAACATAAATTGATTAT
2087821 GCCTATTCTATTTATATGAAACATAAATTGATTAT
1 GCCTATTCTATTTATATGAAACATAAATTGATTAT
2087856 ATGTAGGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (35 bp):
GCCTATTCTATTTATATGAAACATAAATTGATTAT
Found at i:2090800 original size:22 final size:21
Alignment explanation
Indices: 2090762--2090839 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 21
2090752 TAATAATTTA
2090762 AATAATTAAAATAATATATTTTAT
1 AATAATT-AAA-AATATATTTT-T
* *
2090786 AATAATT--TACTATATTTTT
1 AATAATTAAAAATATATTTTT
2090805 AATAATTAAATAATATATTTTT
1 AATAATTAAA-AATATATTTTT
2090827 AATATTATTAAAA
1 AATA--ATTAAAA
2090840 TAAAATTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
19 8 0.18
20 9 0.20
22 14 0.31
23 1 0.02
24 13 0.29
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTAAAAATATATTTTT
Found at i:2090841 original size:22 final size:22
Alignment explanation
Indices: 2090762--2090830 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
2090752 TAATAATTTA
2090762 AATAATTAAAATAATATATTTTAT
1 AATAATT-AAATAATATATTTT-T
*
2090786 AATAATT---TACTATATTTTT
1 AATAATTAAATAATATATTTTT
2090805 AATAATTAAATAATATATTTTT
1 AATAATTAAATAATATATTTTT
2090827 AATA
1 AATA
2090831 TTATTAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 8 0.20
20 10 0.25
22 15 0.38
24 7 0.17
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (22 bp):
AATAATTAAATAATATATTTTT
Found at i:2091509 original size:3 final size:3
Alignment explanation
Indices: 2091501--2091540 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
2091491 ATCTAACTGG
2091501 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
2091541 TATTACACGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2092461 original size:21 final size:21
Alignment explanation
Indices: 2092435--2092529 Score: 131
Period size: 21 Copynumber: 4.6 Consensus size: 21
2092425 GTTTTCAAAT
* *
2092435 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
2092456 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
2092477 TCGCAATGCGAA-TATGTA-AA
1 TCGCAATGCGAACT-TGGACTA
2092497 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
2092518 TCGCAATGCGAA
1 TCGCAATGCGAA
2092530 TATGTAAATC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.26
21 48 0.74
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:2092500 original size:41 final size:41
Alignment explanation
Indices: 2092455--2092548 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
2092445 AACTTCGACT
2092455 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
2092496 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
2092537 ATCGCAATGCGA
1 ATCGCAATGCGA
2092549 TAGTCGAAGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (41 bp):
ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
Found at i:2092501 original size:20 final size:20
Alignment explanation
Indices: 2092476--2092548 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
2092466 AACTTGGACT
2092476 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
* *
2092496 ATCGCAATGCGAACT-TGGACT
1 ATCGCAATGCGAA-TATGTA-A
2092517 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
2092537 ATCGCAATGCGA
1 ATCGCAATGCGA
2092549 TAGTCGAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 29 0.63
21 17 0.37
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:2093353 original size:42 final size:42
Alignment explanation
Indices: 2093291--2093519 Score: 341
Period size: 42 Copynumber: 5.3 Consensus size: 42
2093281 TGCGATTTTA
*
2093291 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
*
2093333 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
*
2093375 GACTATCGCAATGAATTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
*
2093417 GACTTGGAATAAATCACAACGAATTTGGAATAAATCGCAACGCGAACTTG
1 GAC------T--ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
*
2093467 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
2093509 GACTATCGCAA
1 GACTATCGCAA
2093520 TGCGAATATG
Statistics
Matches: 171, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
42 130 0.76
44 1 0.01
48 1 0.01
50 39 0.23
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
Found at i:2093436 original size:29 final size:29
Alignment explanation
Indices: 2093391--2093470 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
2093381 CGCAATGAAT
2093391 TTGGAATAAATCGCAACGCGAACTTGGAC
1 TTGGAATAAATCGCAACGCGAACTTGGAC
*
2093420 TTGGAATAAATCACAA--CGAA--T----
1 TTGGAATAAATCGCAACGCGAACTTGGAC
2093441 TTGGAATAAATCGCAACGCGAACTTGGAC
1 TTGGAATAAATCGCAACGCGAACTTGGAC
2093470 T
1 T
2093471 ATCGCAACGA
Statistics
Matches: 41, Mismatches: 2, Indels: 16
0.69 0.03 0.27
Matches are distributed among these distances:
21 15 0.37
23 4 0.10
25 2 0.05
27 4 0.10
29 16 0.39
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (29 bp):
TTGGAATAAATCGCAACGCGAACTTGGAC
Found at i:2093498 original size:92 final size:85
Alignment explanation
Indices: 2093291--2093512 Score: 338
Period size: 92 Copynumber: 2.5 Consensus size: 85
2093281 TGCGATTTTA
*
2093291 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGAC-TATCGCAACGAATTTGGAA
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTTATCACAACGAATTTGGAA
2093355 TAAATCGCAACGCGAACTTC
66 TAAATCGCAACGCGAACTTC
* *
2093375 GACTATCGCAATGAATTTGGAATAAATCGCAACGCGAACTTGGACTTGGAATAAATCACAACGAA
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGAC-T----T--ATCACAACGAA
*
2093440 TTTGGAATAAATCGCAACGCGAACTTG
59 TTTGGAATAAATCGCAACGCGAACTTC
2093467 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACT
2093513 ATCGCAATGC
Statistics
Matches: 124, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
84 43 0.35
90 1 0.01
91 1 0.01
92 79 0.64
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (85 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTTATCACAACGAATTTGGAA
TAAATCGCAACGCGAACTTC
Found at i:2099449 original size:37 final size:36
Alignment explanation
Indices: 2099390--2099509 Score: 181
Period size: 35 Copynumber: 3.3 Consensus size: 36
2099380 ATCCCATTAT
* *
2099390 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
*
2099426 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2099462 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2099497 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
2099510 TTGGTTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 35 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:2099465 original size:21 final size:21
Alignment explanation
Indices: 2099441--2099501 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
2099431 TTCAAAGAAA
2099441 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
2099462 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
2099476 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
2099497 CATTT
1 CATTT
2099502 TTTCAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:2099518 original size:35 final size:36
Alignment explanation
Indices: 2099392--2099536 Score: 142
Period size: 35 Copynumber: 4.1 Consensus size: 36
2099382 CCCATTATCA
*
2099392 TTTTTCAACA-AACA-TCTACCAAACTTTGAAAAAC-T
1 TTTTTCAA-AGAACAGT-TACCAAACTTTGAAAACCAT
*
2099427 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACCA-
1 -TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
*
2099464 -TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
1 TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
***
2099500 TTTTTCAAAG-TTGGTTACCAAAC-TTGAAAACCAT
1 TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
2099534 TTT
1 TTT
2099537 AATACTTTCA
Statistics
Matches: 98, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
34 14 0.14
35 45 0.46
36 8 0.08
37 30 0.31
38 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.33
Consensus pattern (36 bp):
TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
Found at i:2104055 original size:37 final size:36
Alignment explanation
Indices: 2103996--2104115 Score: 181
Period size: 35 Copynumber: 3.3 Consensus size: 36
2103986 ATCCCATTAT
* *
2103996 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
*
2104032 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2104068 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2104103 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
2104116 TTGGTTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 35 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:2104071 original size:21 final size:21
Alignment explanation
Indices: 2104047--2104107 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
2104037 TTCAAAGAAA
2104047 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
2104068 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
2104082 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
2104103 CATTT
1 CATTT
2104108 TTTCAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:2104124 original size:35 final size:36
Alignment explanation
Indices: 2103998--2104142 Score: 142
Period size: 35 Copynumber: 4.1 Consensus size: 36
2103988 CCCATTATCA
*
2103998 TTTTTCAACA-AACA-TCTACCAAACTTTGAAAAAC-T
1 TTTTTCAA-AGAACAGT-TACCAAACTTTGAAAACCAT
*
2104033 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACCA-
1 -TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
*
2104070 -TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
1 TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
***
2104106 TTTTTCAAAG-TTGGTTACCAAAC-TTGAAAACCAT
1 TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
2104140 TTT
1 TTT
2104143 AATACTTTCA
Statistics
Matches: 98, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
34 14 0.14
35 45 0.46
36 8 0.08
37 30 0.31
38 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.33
Consensus pattern (36 bp):
TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
Found at i:2104546 original size:115 final size:114
Alignment explanation
Indices: 2104340--2104566 Score: 355
Period size: 115 Copynumber: 2.0 Consensus size: 114
2104330 AGTGTTCTTG
* * *
2104340 TCATCCTTGCGTGTAAAGGAAATAAATAAGAATTTTGAGGCAAGAATTTGCTCATCCGAGAAGAG
1 TCATCCTTGCGTGTAAAGGAAATAAATAAGAATTCTAAGGCAAAAATTTGCTCATCCGAGAAGAG
* *
2104405 AGAACACATCAATGACAAAAATATATGATTACCGTAGACCTGTATTTGC
66 AGAACACATCAATGACAAAAAGATATGATTACCATAGACCTGTATTTGC
* *
2104454 TCATCCTTGCGTGTAAAGGGAAATAAATAGGAATTCTAAGGCAAAAATTTGCTCATTCGAGAAGA
1 TCATCCTTGCGTGTAAA-GGAAATAAATAAGAATTCTAAGGCAAAAATTTGCTCATCCGAGAAGA
* * *
2104519 GAGAACACCTCAGTGACAAAAAGATATGATTAGCATAGACCTGTATTT
65 GAGAACACATCAATGACAAAAAGATATGATTACCATAGACCTGTATTT
2104567 ATTTAGAGAG
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
114 17 0.17
115 85 0.83
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (114 bp):
TCATCCTTGCGTGTAAAGGAAATAAATAAGAATTCTAAGGCAAAAATTTGCTCATCCGAGAAGAG
AGAACACATCAATGACAAAAAGATATGATTACCATAGACCTGTATTTGC
Found at i:2106125 original size:18 final size:18
Alignment explanation
Indices: 2106104--2106152 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
2106094 CGGAGTTGGC
2106104 GAAAATGAAAGAGTTAGA
1 GAAAATGAAAGAGTTAGA
* *
2106122 GAAAATGAAAGAGTTGGC
1 GAAAATGAAAGAGTTAGA
2106140 GAAAATGAAAGAG
1 GAAAATGAAAGAG
2106153 AAATCTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.53, C:0.02, G:0.31, T:0.14
Consensus pattern (18 bp):
GAAAATGAAAGAGTTAGA
Found at i:2109300 original size:64 final size:64
Alignment explanation
Indices: 2109189--2109336 Score: 192
Period size: 64 Copynumber: 2.3 Consensus size: 64
2109179 TCTTTCAATG
* * * *
2109189 AAGGTATGCATCGATGCACTACTTGTGCATCGGTGCATAAAATGCATTCGATGTTATTATTTTAA
1 AAGGAATGCATCGATGCACTACTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTT-A
* * * *
2109254 AAGG-ATGCATCGATGCATTAGC-TATGCATCGATGCATCAAAGGCATTCGATGTTCTTCTTTTA
1 AAGGAATGCATCGATGCACTA-CTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTTA
2109317 AAGGAATGCATCGATGCACT
1 AAGGAATGCATCGATGCACT
2109337 TATGAATGTG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
63 5 0.07
64 63 0.86
65 5 0.07
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (64 bp):
AAGGAATGCATCGATGCACTACTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTTA
Found at i:2112913 original size:14 final size:14
Alignment explanation
Indices: 2112894--2112925 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
2112884 ATACACGTAT
2112894 TCATTTCATGTAAA
1 TCATTTCATGTAAA
*
2112908 TCATTTCATGTAAT
1 TCATTTCATGTAAA
2112922 TCAT
1 TCAT
2112926 ATCACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (14 bp):
TCATTTCATGTAAA
Found at i:2113494 original size:64 final size:64
Alignment explanation
Indices: 2113383--2113530 Score: 192
Period size: 64 Copynumber: 2.3 Consensus size: 64
2113373 TCTTTCAATG
* * * *
2113383 AAGGTATGCATCGATGCACTACTTGTGCATCGGTGCATAAAATGCATTCGATGTTATTATTTTAA
1 AAGGAATGCATCGATGCACTACTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTT-A
* * * *
2113448 AAGG-ATGCATCGATGCATTAGC-TATGCATCGATGCATCAAAGGCATTCGATGTTCTTCTTTTA
1 AAGGAATGCATCGATGCACTA-CTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTTA
2113511 AAGGAATGCATCGATGCACT
1 AAGGAATGCATCGATGCACT
2113531 TATGAATGTG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
63 5 0.07
64 63 0.86
65 5 0.07
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (64 bp):
AAGGAATGCATCGATGCACTACTTATGCATCGATGCATAAAAGGCATTCGATGTTATTATTTTA
Found at i:2123253 original size:144 final size:144
Alignment explanation
Indices: 2122988--2123281 Score: 464
Period size: 144 Copynumber: 2.0 Consensus size: 144
2122978 TCCCTCTGGC
* *
2122988 GGAGGTGAGGGATCTCACTCCCATGACACTGGTGGTGGCAGTGGTCATGGTCCCCAACGTCCTCA
1 GGAGGTGAGAGATCTCACTCCCATGACACTAGTGGTGGCAGTGGTCATGGTCCCCAACGTCCTCA
* * *
2123053 ACAACAAGGACAAGGTGGGCGTGGAGGTTATACGGGGGGAAGAGGCTGGGCTCCACAGTCCCAAC
66 ACAACAAGGACAAGGTGGGCGTGGAGGTTACACAGGGGGAAGAGGCTGGGCCCCACAGTCCCAAC
* *
2123118 AAGGTGGTCGTGGG
131 AAGGAGGTCGGGGG
* *
2123132 GGAGGTGAGAGCTCTCAGTCCCATGACACTAGTGGTGGCAGTGGTCATGGTCCCCAACGTCCTCA
1 GGAGGTGAGAGATCTCACTCCCATGACACTAGTGGTGGCAGTGGTCATGGTCCCCAACGTCCTCA
* * *
2123197 ACAACAAGGACAAGGTGGAG-GTGGAGGTTACCCAGGGGGAAGAGGTTGGGCCCCACAGTCCCAG
66 ACAACAAGGACAAGGTGG-GCGTGGAGGTTACACAGGGGGAAGAGGCTGGGCCCCACAGTCCCAA
2123261 CAAGGAGGTCGGGGG
130 CAAGGAGGTCGGGGG
2123276 GGAGGT
1 GGAGGT
2123282 TATGGAATGG
Statistics
Matches: 137, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 136 0.99
145 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.16
Consensus pattern (144 bp):
GGAGGTGAGAGATCTCACTCCCATGACACTAGTGGTGGCAGTGGTCATGGTCCCCAACGTCCTCA
ACAACAAGGACAAGGTGGGCGTGGAGGTTACACAGGGGGAAGAGGCTGGGCCCCACAGTCCCAAC
AAGGAGGTCGGGGG
Found at i:2133671 original size:1 final size:1
Alignment explanation
Indices: 2133665--2133693 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
2133655 TCATTCATGC
2133665 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2133694 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2141099 original size:199 final size:199
Alignment explanation
Indices: 2140759--2141871 Score: 1319
Period size: 199 Copynumber: 5.6 Consensus size: 199
2140749 CGTAATTTAA
* * *
2140759 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
* * ** * *
2140824 AGTAAATTTGTA-CATGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCAATGTT
66 GGTAAATTTGTACCA-GTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCGATGTT
* * * *
2140888 TTTAGGATCGATACAATTTA-AAATATATTGACACTTTATGCGTGCACCCAGTTTGGCATTCATT
130 TTTGGGATCGATACATTTTATAAATGTATCGACACTTTATGCGTGCACCC-GTTTGGCATTCATT
*
2140952 TTGGAC
194 ATGGAC
* * * *
2140958 AAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
* * ** * *
2141023 GGTATATTTATACCAGTTACATTGGAAATTTACCTATTACATTATAATTATTGGTTTTGATATTT
66 GGTAAATTTGTACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
* * * *
2141088 TTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTC
131 TTGGGATCGATACATTTTATAAATGTATCGACACTTTATGCGTGCACCCGTTT-GGCATTCATTA
2141153 TGGAC
195 TGGAC
* * * *
2141158 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
* * ** *
2141223 GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
66 GGTAAATTTGTACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
* * * *
2141288 TTGGGATTGATACAATTTA-AAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTC
131 TTGGGATCGATACATTTTATAAATGTATCGACACTTTATGCGTGCACC-CGTTTGGCATTCATTA
*
2141352 TGAAC
195 TGGAC
* * * * *
2141357 AAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTAAACT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
* * * * * *
2141422 AGTATATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAATGTTT
66 GGTAAATTTGTACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
* * * *
2141487 TTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCCTTCATTA
131 TTGGGATCGATACATTTTATAAATGTATCGACACTTTATGCGTGCACCCGTTT-GGCATTCATTA
2141552 TGGAC
195 TGGAC
* * * * * * **
2141557 AAAAA-TATCTACAGAAATTTAAAAAGTGTCGATAAATTATGTAGATCTATTTTCTCATAAAATT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
* ** *
2141621 GGTAAATTTGTACCGGTTACATTGTTAATTTACCTATTACATTATAATTATCTA-ATTCGATGTT
66 GGTAAATTTGTACCAGTTACATTGGAAATTTACCTATTACATTATAATTATC-AGTTTCGATGTT
* * * *
2141685 TGTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATTCGTGTACCTCGGTTGGGCATTCA
130 TTTGGGATCGATACATTTT-ATAAATGTATCGACACTTTATGCGTGCACC-C-GTTTGGCATTCA
2141749 TTATGGAC
192 TTATGGAC
* * * * *
2141757 AAAAAGAATCGACAC-AATTTAAAAAGTGTCGATACATTGTGTTGACATG-TTTTCTAAT-AAAT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGAC-CGATTTTCTAATAAAAC
* * * *
2141819 CGGTATATATCTA-CATGTTACATTGGAAATTTACCTATTACGTTATAATTATC
65 CGGTAAATTTGTACCA-GTTACATTGGAAATTTACCTATTACATTATAATTATC
2141872 TCAAATTTTT
Statistics
Matches: 777, Mismatches: 124, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
198 5 0.01
199 490 0.63
200 274 0.35
201 8 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCGATTTTCTAATAAAACC
GGTAAATTTGTACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTT
TTGGGATCGATACATTTTATAAATGTATCGACACTTTATGCGTGCACCCGTTTGGCATTCATTAT
GGAC
Found at i:2141497 original size:399 final size:399
Alignment explanation
Indices: 2140759--2141871 Score: 1720
Period size: 399 Copynumber: 2.8 Consensus size: 399
2140749 CGTAATTTAA
*
2140759 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
* ** *
2140824 AGTAAATTTGTACATGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCAATGTTT
66 GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* * * * *
2140889 TTAGGATCGATACAATTTAAAATATATTGACACTTTATGCGTGCACCCAGTTTGGCATTCATTTT
131 TTGGGATCGATACAATTTAAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTAT
2140954 GGACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTA
196 GGACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTA
* * **
2141019 AACCGGTATATTTATACCAGTTACATTGGAAATTTACCTATTACATTATAATTATTGGTTTTGAT
261 AACTGGTATATTTATACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAAT
2141084 ATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTC
326 ATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTC
*
2141149 ATTCTGGAC
391 ATTATGGAC
2141158 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
1 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
2141223 GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
66 GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* *
2141288 TTGGGATTGATACAATTTAAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTAAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTAT
*
2141353 GAACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTA
196 GGACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTA
* *
2141418 AACTAGTATATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAAT
261 AACTGGTATATTTATACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAAT
* *
2141483 GTTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCCTTC
326 ATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTC
2141548 ATTATGGAC
391 ATTATGGAC
* * * * *
2141557 AAAAA-TATCTACAGAAATTTAAAAAGTGTCGATAAATTATGTAGATCTATTTTCTCATAAAATT
1 AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
* * *
2141621 GGTAAATTTGTACCGGTTACATTGTTAATTTACCTATTACATTATAATTATCTA-ATTCGATGTT
66 GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATC-AGTTTCGATGTT
* * * * * *
2141685 TGTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATTCGTGTACCTCGGTTGGGCATTCA
130 TTTGGGATCGATACAATTT-A-AAATGTATCGACACTTTATGCGTGCACCT-AGTTTGGCATTCA
* * * *
2141749 TTATGGACAAAAAGAATCGACAC-AATTTAAAAAGTGTCGATACATTGTGTTGACATG-TTTTCT
192 TTATGGACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGAC-CGCTTTTCT
* * *
2141812 AA-TAAA-TCGGTATATATCTA-CATGTTACATTGGAAATTTACCTATTACGTTATAATTATC
256 AATTAAACT-GGTATATTTATACCA-GTTACATTGGAAATTTACCTATTACATTATAATTATC
2141872 TCAAATTTTT
Statistics
Matches: 660, Mismatches: 47, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
397 5 0.01
398 175 0.27
399 448 0.68
400 32 0.05
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (399 bp):
AAAAAGTATCGACATAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATC
GGTAAATTTGTACCGGTTATATTGTTAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
TTGGGATCGATACAATTTAAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTAT
GGACAAAAAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGTTGACCGCTTTTCTAATTA
AACTGGTATATTTATACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTTTCAAT
ATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTC
ATTATGGAC
Found at i:2143208 original size:12 final size:12
Alignment explanation
Indices: 2143191--2143226 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
2143181 TGGTGGAGCC
*
2143191 GAAATTTATATT
1 GAAATTTAAATT
*
2143203 GAAATTCAAATT
1 GAAATTTAAATT
2143215 GAAATTTAAATT
1 GAAATTTAAATT
2143227 CAGCCTTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (12 bp):
GAAATTTAAATT
Found at i:2145842 original size:15 final size:16
Alignment explanation
Indices: 2145822--2145852 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2145812 GAGGGTTGTC
2145822 GTTGAGAAGAG-TTTG
1 GTTGAGAAGAGCTTTG
2145837 GTTGAGAAGAGCTTTG
1 GTTGAGAAGAGCTTTG
2145853 AGAAAGACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.03, G:0.39, T:0.32
Consensus pattern (16 bp):
GTTGAGAAGAGCTTTG
Found at i:2147057 original size:202 final size:201
Alignment explanation
Indices: 2146139--2147099 Score: 1408
Period size: 201 Copynumber: 4.8 Consensus size: 201
2146129 CGCGAAATTT
** * * *
2146139 AAAAAGATATCGACACAAATTTAAAAAGTGTCGATATATTATGTAGACCTATTTTCTCATAAAAC
1 AAAAAG-TATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC
* * * * * * * *
2146204 CGGTAAATTTGTACCAGTTATATTG-TAATTTACCTATTACATTATAATTATCGGTTTTGATGTT
65 CGATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTT
** * * * * * * *
2146268 TTTGGGATCGACACTTTTTATAAATGTATCGACACTTTATATGTGTAACTC-GTTAGCCATTGAT
130 TTTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCAT
2146332 TCTGGAC
195 TCTGGAC
* * * * *
2146339 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTTGACTTATTCTCACATAAAACC
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
* * *
2146404 AATATATTTATACCGGTTACATT-ACAAAATTACCTATTACAATATAATTATGTGTTTAT-ATGT
66 GATATATTTATACCGGTTACATTGA-AAAATTACCTATTACATTATAATTATGGGTTT-TGATGT
2146467 TTTTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCA
129 TTTTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCA
*
2146532 TTTTGGAC
194 TTCTGGAC
* * *
2146540 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATATATACATATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
* *
2146605 GATTTATTTATATCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
66 GATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
* *
2146670 TTGGGATTGACACTTTTTATAAATGTATCGACACTTTATGTGTGCACCCCTTTTGGGCATTCATT
131 TTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCATT
2146735 CTGGAC
196 CTGGAC
* *
2146741 AAAAAGTATCGACACAAATTCCGCAAGTGTCGATACATTATGTAGAACTATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
* * *
2146806 GGTCTATTTATACCGGTTACATTAAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
66 GATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
*
2146871 TTGGGATCGACACTTTTTATAAATTTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCATT
131 TTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCATT
*
2146936 CTGGGAA
196 CT-GGAC
* *
2146943 AAAAAGTATCGATACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
* * *
2147008 GATCTATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTT
66 GATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
2147073 TTGGGATCGACACTTTTTATAAATGTA
131 TTGGGATCGACACTTTTTATAAATGTA
2147100 CCGATACATA
Statistics
Matches: 690, Mismatches: 64, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
199 70 0.10
200 85 0.12
201 383 0.56
202 152 0.22
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (201 bp):
AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
GATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTT
TTGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCATT
CTGGAC
Found at i:2147381 original size:19 final size:19
Alignment explanation
Indices: 2147357--2147424 Score: 127
Period size: 19 Copynumber: 3.6 Consensus size: 19
2147347 TTACATTCAC
*
2147357 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCTT
2147376 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCTT
2147395 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCTT
2147414 ATACAAAATTA
1 ATACAAAATTA
2147425 ACCCTACATT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.34
Consensus pattern (19 bp):
ATACAAAATTATAAATCTT
Found at i:2149003 original size:18 final size:18
Alignment explanation
Indices: 2148980--2149014 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
2148970 TCCTCCTCAT
2148980 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
2148998 TTCCTCCATCTTTTCTT
1 TTCCTCCATCTTTTCTT
2149015 TTTCATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:2149395 original size:15 final size:15
Alignment explanation
Indices: 2149372--2149401 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2149362 ACTTTGTTTT
2149372 CCCTCACCGTCATCC
1 CCCTCACCGTCATCC
*
2149387 CCCTGACCGTCATCC
1 CCCTCACCGTCATCC
2149402 ATCTCTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.57, G:0.10, T:0.20
Consensus pattern (15 bp):
CCCTCACCGTCATCC
Found at i:2152338 original size:182 final size:182
Alignment explanation
Indices: 2151582--2152326 Score: 1046
Period size: 182 Copynumber: 4.1 Consensus size: 182
2151572 AACCCAAGTG
* * * * *
2151582 TCGATACATTTTTATAAAATATCAACACTTTAAATGCGCTATTACTGCTTCTCTTTTAAATTCCA
1 TCGATACATTTTTATAAAGTATCGACACTTTATAGGCGCTATTACTGCTTCTCATTTAAATTCCA
* * * * *
2151647 AAAGTGTCGATACTTATAGTAAAGTATCGACACTTTTAACATATTCGATGGCGCTTTACCGGTTT
66 AAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTT
** *
2151712 TGTCATTTTGAGACCTTTTTTATCATATTTTTACATGTTATATTGTTATGGA
131 TGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
* * *
2151764 TCGATACATTTTTATATAAAGTATCGATACTTTATAGGCGCTATTACTGCTTGTCTTTTAAATTC
1 TCGATACA-TTTT-TATAAAGTATCGACACTTTATAGGCGCTATTACTGCTTCTCATTTAAATTC
* * *
2151829 CAAAAGTATCGATACTTGTAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGGT
64 CAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGT
* * * *
2151894 TTTGTCATTTTGATATCGATTTTATCATA-TTTTATCTGTTATATTGTTATGGA
129 TTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
* ** *
2151947 TCGATACATTTTTATAAAGGATCGACACTTTATAAACGCTATTACTGCTTGT-ATTTTAAATTCC
1 TCGATACATTTTTATAAAGTATCGACACTTTATAGGCGCTATTACTGCTTCTCA-TTTAAATTCC
* *
2152011 AAAAGTGCCGATACTTATAATAAAGTATCAACACTTTCAACATATCCGGTAGCGCTTTACCGGTT
65 AAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTT
* * * **
2152076 TTGTCATTTAT-AAACCGGTTTTATGATATTTTAACCTACTATATTGTTATGGA
130 TTGTCATTT-TGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
*
2152129 TCGATACATTTTTATAAAGTATCGACACTTTATAGGCGCTGTTACTGCTTCTCATTTAAATTCCA
1 TCGATACATTTTTATAAAGTATCGACACTTTATAGGCGCTATTACTGCTTCTCATTTAAATTCCA
* * *
2152194 AAAGTGTCGATGCTTATATTAATGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTT
66 AAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTT
* * * *
2152259 GGTCATTTTGAGACCGGTTTTGTTATTTTTTTACCTGTTATATTGTTATGGA
131 TGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
2152311 TCGATACATATTTTAT
1 TCGATACAT-TTTTAT
2152327 TTGTATCGAC
Statistics
Matches: 499, Mismatches: 56, Indels: 15
0.88 0.10 0.03
Matches are distributed among these distances:
181 129 0.26
182 202 0.40
183 41 0.08
184 127 0.25
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (182 bp):
TCGATACATTTTTATAAAGTATCGACACTTTATAGGCGCTATTACTGCTTCTCATTTAAATTCCA
AAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTT
TGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
Found at i:2153005 original size:2 final size:2
Alignment explanation
Indices: 2153000--2153024 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2152990 TTTTAAATGA
2153000 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2153025 ATTCAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.