genome.fa.s10.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000010.1 Hibiscus syriacus cultivar Beakdansim tig00000016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133477

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3736--3782	2	24.5	2	89	8	71	53	0	0	46	1.00
3736--3782	23	2.0	23	91	0	76	53	0	0	46	1.00
4028--4101	37	2.0	36	86	2	103	32	25	18	22	1.97
4029--4098	18	3.9	17	70	17	61	32	27	18	21	1.97
4666--4798	62	2.1	62	81	9	146	27	18	19	33	1.96
4703--4821	62	1.9	62	84	3	159	26	17	20	35	1.95
8963--9084	16	7.7	15	70	21	54	62	1	3	32	1.21
8975--9074	19	4.9	19	66	27	55	62	1	4	33	1.21
9000--9087	24	3.7	24	72	18	76	60	0	4	35	1.17
8961--9053	32	2.9	31	75	7	96	62	2	3	32	1.23
9454--9495	22	1.9	22	85	9	59	16	0	11	71	1.14
9475--9504	16	1.9	15	93	6	51	13	0	13	73	1.10
12827--12909	28	2.9	28	75	10	71	57	10	12	19	1.63
14062--14114	2	26.0	2	96	3	97	49	0	1	49	1.12
14696--15180	85	5.7	85	83	4	568	27	18	19	34	1.95
14724--15190	170	2.7	171	84	3	627	26	18	18	36	1.94
15567--15989	64	6.6	64	90	2	645	28	13	21	35	1.92
16736--16998	95	2.7	95	85	3	339	33	17	16	32	1.92
20715--20778	29	2.2	30	85	2	85	31	26	4	37	1.77
24386--24473	29	3.0	29	96	0	158	48	13	13	23	1.78
29039--29098	29	2.1	29	100	0	120	50	13	13	23	1.77
31196--31309	47	2.5	46	87	5	153	30	21	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36134--36171	10	3.9	10	86	6	60	18	21	23	36	1.95
36134--36178	19	2.4	19	92	0	72	17	22	26	33	1.96
36134--36178	9	4.8	9	83	8	54	17	22	26	33	1.96
36181--36213	13	2.5	13	95	0	57	18	48	18	15	1.81
36204--36247	23	1.9	23	100	0	88	18	52	20	9	1.72
36191--36236	18	2.6	18	96	0	83	19	52	19	8	1.72
36255--36330	29	2.6	29	83	4	82	21	9	27	42	1.83
43400--43455	19	2.9	19	85	12	78	16	21	28	33	1.95
43400--43448	10	4.8	11	83	16	70	16	20	26	36	1.93
43401--43455	9	5.6	10	83	12	78	14	21	29	34	1.93
43468--43519	18	2.9	18	97	0	95	19	50	19	11	1.77
43458--43490	13	2.5	13	95	0	57	18	48	18	15	1.81
43527--43602	29	2.6	29	85	0	89	19	9	28	42	1.82
53460--53549	32	2.9	30	78	12	101	34	22	16	26	1.95
53849--53928	2	41.0	2	95	5	146	48	0	0	51	1.00
58171--58258	32	2.9	30	80	6	104	36	21	19	22	1.95
58171--58242	30	2.3	30	85	4	90	33	23	18	25	1.97
58558--58588	2	15.5	2	100	0	62	48	0	0	51	1.00
60571--60603	18	1.9	17	88	11	50	69	12	0	18	1.18
62116--62156	13	3.2	13	82	0	55	68	0	2	29	1.03
62112--62157	16	2.9	16	83	3	58	65	0	2	32	1.05
62613--62720	29	3.7	29	89	0	171	31	26	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62728--62830	51	2.0	51	82	1	125	20	29	30	20	1.98
62992--63041	10	5.0	10	82	0	55	26	30	0	44	1.55
63055--63114	16	3.9	15	74	12	50	30	0	1	68	0.99
70464--70517	21	2.5	22	79	8	67	24	40	3	31	1.72
73679--73729	27	2.0	25	81	14	59	31	23	9	35	1.87
75552--75604	21	2.5	22	78	6	63	24	37	3	33	1.74
87214--87260	20	2.3	20	96	0	85	46	2	19	31	1.61
87416--87496	37	2.2	38	78	17	89	51	3	1	43	1.27
89502--89676	60	2.9	59	78	9	176	33	18	5	43	1.72
91108--91194	34	2.5	34	88	5	122	40	4	8	47	1.54
94431--94483	21	2.5	21	72	6	54	22	24	16	35	1.95
94473--94709	41	5.8	40	70	13	146	35	19	19	25	1.96
94534--94606	21	3.5	21	79	3	76	23	21	17	36	1.94
94596--94709	20	5.7	20	88	2	147	39	19	21	20	1.93
94596--94727	61	2.2	59	82	6	149	37	20	21	20	1.94
95310--95366	30	1.9	30	92	0	96	40	7	7	45	1.58
95380--96157	54	14.4	54	72	18	488	53	12	0	33	1.42
95392--95440	22	2.2	22	85	3	62	55	12	0	32	1.37
95395--95710	80	3.9	80	91	3	499	52	13	0	33	1.43
95594--95647	14	3.6	14	72	18	54	57	5	0	37	1.22
95636--95678	22	2.0	22	100	0	86	51	13	0	34	1.42
95638--95686	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95690--95732	22	2.0	22	95	0	77	51	11	0	37	1.39
95692--95740	22	2.2	22	85	3	62	55	12	0	32	1.37
95695--96157	80	5.8	80	81	8	523	53	12	0	33	1.42
95828--95901	22	3.2	22	68	20	60	58	14	0	27	1.37
95906--95980	22	3.2	22	71	14	69	56	17	0	26	1.42
96040--96088	22	2.2	22	85	3	62	55	12	2	30	1.48
95395--96112	380	1.9	378	87	5	1072	53	13	0	33	1.43
96092--96134	22	2.0	22	100	0	86	51	13	0	34	1.42
96094--96142	22	2.2	22	88	3	71	55	14	0	30	1.40
96137--96254	15	7.5	15	79	15	123	51	0	0	47	1.06
95894--96224	54	6.5	50	81	11	167	52	9	0	37	1.37
96637--96718	33	2.5	33	87	2	119	43	23	21	10	1.84
96658--96726	33	2.1	33	88	0	102	46	24	18	10	1.80
96730--96823	33	2.8	33	88	1	134	11	21	21	45	1.83
96794--96851	20	2.9	20	77	10	64	17	22	15	44	1.86
98503--98718	94	2.3	94	96	0	396	21	12	18	47	1.82
100576--100611	14	2.6	14	95	0	63	33	0	22	44	1.53
100718--100778	19	3.5	19	70	21	60	44	19	22	13	1.85
100736--100792	14	3.7	14	70	20	51	43	21	24	10	1.83
100718--100797	33	2.4	33	93	0	142	45	20	23	11	1.83
100803--100933	19	7.7	19	60	23	58	12	23	17	46	1.82
100809--100933	33	3.8	33	92	0	205	12	23	17	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100906--100999	20	4.7	20	72	13	68	21	20	23	35	1.96
103264--103288	12	2.1	12	100	0	50	0	28	0	72	0.86
103463--103516	24	2.2	24	90	0	81	40	20	16	22	1.91
104264--104369	20	5.3	20	88	0	131	31	18	25	24	1.98
104298--104414	41	2.9	41	84	3	139	24	17	25	31	1.97
104282--104410	20	6.4	20	83	5	134	27	18	26	27	1.98
104264--104411	20	7.3	20	83	4	127	27	18	25	29	1.98
104311--104432	41	3.0	41	81	3	131	22	20	25	31	1.98
104441--104493	21	2.5	22	81	6	74	33	18	26	20	1.96
105336--105421	29	3.0	29	76	6	84	36	17	4	41	1.70
106225--106302	22	3.5	22	89	0	111	28	21	19	30	1.97
107350--107785	54	8.1	54	87	0	593	33	17	16	32	1.92
108111--108167	22	2.7	22	81	7	66	35	24	10	29	1.89
111247--111453	76	2.7	77	87	2	285	25	31	23	19	1.98
117259--117298	21	1.9	21	89	0	62	25	40	25	10	1.86
119496--119568	30	2.3	31	88	6	112	39	4	17	38	1.69
119873--120077	76	2.7	76	86	3	274	24	32	22	20	1.98
124062--124142	39	2.1	40	93	4	139	34	13	7	44	1.72
127227--127261	16	2.2	16	94	0	61	42	17	14	25	1.86
127952--127991	18	2.4	17	87	8	55	30	5	17	47	1.69
129631--129679	21	2.3	21	78	3	53	30	6	20	42	1.76
130514--131186	350	2.0	337	85	7	908	40	12	12	34	1.81

Tables:   1

The End!