genome.fa.s100.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000100.1 Hibiscus syriacus cultivar Beakdansim tig00000183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100971

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8906--8955	21	2.4	21	100	0	100	28	34	16	22	1.95
10806--10856	15	3.2	16	78	10	61	47	1	15	35	1.57
12099--12257	74	2.2	74	97	1	302	33	8	13	44	1.75
12311--12355	3	15.7	3	78	17	51	66	0	2	31	1.04
12302--12355	20	2.8	19	78	10	56	70	0	3	25	1.04
12320--12391	22	3.3	23	75	21	57	73	1	4	20	1.07
12340--12388	23	2.2	22	82	10	55	75	2	6	16	1.09
19374--19414	3	13.7	3	100	0	82	68	0	0	31	0.90
20358--20386	15	1.9	15	100	0	58	10	27	13	48	1.75
24051--24367	173	1.8	173	95	0	571	28	17	21	32	1.96
30792--30837	23	2.0	23	91	4	76	52	2	0	45	1.13
30795--30834	15	2.6	15	88	4	53	55	2	0	42	1.13
34603--34676	18	4.1	19	82	8	100	24	21	29	24	1.99
38743--38813	18	3.9	18	81	0	88	16	19	35	28	1.94
39672--39722	21	2.4	21	84	12	61	68	0	7	23	1.15
40613--40708	35	2.6	36	85	6	122	33	13	14	38	1.85
41664--42143	105	4.8	98	78	7	462	20	22	23	33	1.97
41173--42143	109	9.3	105	78	9	748	21	21	24	32	1.98
41180--42148	203	4.7	204	82	6	1036	21	21	24	32	1.98
42538--42773	104	2.3	102	81	6	246	40	13	19	26	1.88
42673--42853	65	2.8	65	94	0	308	35	11	20	31	1.89
42738--43093	102	3.5	102	94	0	604	37	12	20	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42803--43111	37	8.9	36	70	15	238	37	13	21	27	1.91
42638--42955	167	1.9	169	94	1	559	37	12	20	30	1.89
43974--44024	22	2.3	22	96	0	93	25	11	27	35	1.91
44640--44690	13	3.8	13	89	2	66	0	11	7	80	0.90
44640--44715	23	3.0	26	70	20	70	0	13	9	77	0.99
44649--44714	27	2.7	23	80	17	71	0	13	7	78	0.94
44649--44714	16	3.9	18	72	21	63	0	13	7	78	0.94
44640--44714	15	4.7	15	75	22	73	0	13	8	78	0.95
47734--47783	21	2.4	21	83	12	59	68	0	8	24	1.16
47947--47993	2	23.5	2	100	0	94	51	0	0	48	1.00
48665--48760	35	2.6	36	86	6	131	32	14	14	38	1.87
55161--55238	32	2.4	33	85	10	108	47	10	14	28	1.76
55890--55942	23	2.5	22	81	9	65	52	18	16	11	1.73
57050--57114	29	2.2	28	81	10	69	24	4	10	60	1.49
57109--57142	17	2.1	16	88	5	50	26	2	0	70	1.01
58456--58506	25	2.0	26	81	11	61	60	1	3	33	1.26
58539--58644	39	2.7	39	82	5	124	43	2	17	35	1.64
59681--60285	208	2.9	207	91	3	935	52	8	11	28	1.65
60452--60494	13	3.3	13	93	0	77	39	0	9	51	1.34
60475--60525	20	2.4	21	74	9	59	41	7	5	45	1.57
60867--60918	21	2.5	21	90	6	79	26	1	25	46	1.63
60907--60942	6	5.7	6	93	6	54	16	0	33	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61020--61073	20	2.8	20	85	2	65	40	7	7	44	1.60
61261--61286	11	2.4	11	100	0	52	34	26	7	30	1.85
61436--61476	14	2.9	14	92	0	73	21	0	34	43	1.53
61436--61476	7	5.9	7	94	0	64	21	0	34	43	1.53
61508--61550	13	3.3	13	93	0	77	39	0	9	51	1.34
61531--61581	20	2.4	21	74	9	59	41	7	5	45	1.57
60992--62902	498	3.8	486	78	14	1925	37	8	11	43	1.71
61944--61982	13	2.9	14	84	7	53	23	0	28	48	1.51
62062--62106	13	3.3	13	87	6	63	40	0	8	51	1.33
62062--62111	15	3.4	15	81	13	68	40	2	8	50	1.43
62527--62593	2	33.0	2	83	8	82	44	1	4	49	1.31
62863--63040	76	2.3	76	89	3	277	34	17	10	37	1.84
63168--63208	11	3.5	11	87	12	64	39	0	9	51	1.35
63168--63208	13	3.3	13	90	6	59	39	0	9	51	1.35
63189--63239	20	2.4	21	74	9	59	41	7	5	45	1.57
63610--63654	14	3.2	14	78	12	56	31	0	15	53	1.43
64439--64512	32	2.3	32	90	0	121	21	24	20	33	1.97
67769--67833	31	2.1	32	91	2	105	24	23	12	40	1.89
68445--68500	28	2.0	28	85	0	76	58	0	1	39	1.08
68752--68793	22	1.9	22	95	0	75	19	23	26	30	1.98
74476--74519	21	2.1	21	91	0	70	50	0	11	38	1.39
82672--82789	30	3.9	30	80	6	123	33	20	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83337--83469	63	2.1	63	83	6	162	29	18	17	35	1.93
87419--87475	18	3.0	18	75	22	62	29	10	8	50	1.67
87435--87475	21	2.0	21	90	0	64	29	9	9	51	1.67
94530--94590	31	1.9	32	86	3	88	27	29	26	16	1.97
96156--96240	21	4.0	21	90	0	134	14	28	40	17	1.88
96156--96240	42	2.0	42	95	0	152	14	28	40	17	1.88
96582--96644	24	2.6	24	97	0	117	23	41	0	34	1.55
97248--97277	15	2.0	15	100	0	60	53	6	13	26	1.64
98218--98261	3	15.0	3	88	4	63	0	29	2	68	1.02
99680--99724	20	2.2	21	92	4	74	15	28	37	17	1.91

Tables:   1

The End!