genome.fa.s1000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001000.1 Hibiscus syriacus cultivar Beakdansim tig00002000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72292

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10757--10808	21	2.5	21	81	3	52	7	46	13	32	1.72
11937--12096	65	2.5	64	84	3	196	33	22	16	27	1.96
14117--14144	12	2.3	12	100	0	56	10	0	32	57	1.33
14005--14797	394	2.0	397	94	3	1394	30	14	19	34	1.92
15130--15167	16	2.5	15	84	12	51	65	0	5	28	1.14
15175--15227	22	2.5	22	93	3	90	26	9	39	24	1.86
15327--15435	20	5.6	19	72	16	80	35	11	22	29	1.90
15347--15436	40	2.2	40	88	0	126	35	12	22	30	1.90
15458--15558	20	5.0	20	71	20	77	24	15	24	34	1.95
19474--19568	42	2.3	42	94	3	165	15	12	18	52	1.74
19766--19843	22	3.4	23	79	11	72	48	1	0	50	1.09
19791--19870	32	2.5	32	80	14	92	47	2	0	50	1.14
19833--19885	23	2.3	23	87	6	72	52	1	1	43	1.23
19877--19936	21	2.8	20	73	9	57	45	0	0	55	0.99
20022--20066	23	2.0	23	86	0	63	53	2	2	42	1.25
20421--20479	14	4.1	14	71	4	55	37	16	6	38	1.76
20405--20445	20	2.0	20	85	0	55	34	19	7	39	1.80
20551--20599	21	2.4	20	82	3	62	40	20	16	22	1.91
23517--23566	19	2.5	20	87	3	75	24	18	26	32	1.97
23468--23630	84	1.9	84	85	7	224	26	14	25	33	1.95
23592--23630	20	1.9	21	89	5	62	17	15	30	35	1.91
24316--24373	20	2.9	20	92	0	89	31	31	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24393--24483	45	2.0	46	89	2	139	28	25	19	26	1.99
29240--29302	11	5.9	11	69	14	51	57	3	1	38	1.24
29566--29614	25	2.0	24	84	11	64	44	4	4	46	1.41
31477--31553	22	3.5	22	83	1	82	24	11	23	40	1.88
31497--31531	11	3.2	11	91	0	61	17	11	25	45	1.81
43019--43069	24	2.1	24	82	7	59	62	11	1	23	1.39
44582--44661	27	3.0	27	86	0	88	41	13	1	43	1.52
44719--44797	27	2.9	27	86	0	104	37	12	5	44	1.65
46233--46326	45	2.1	44	82	9	109	29	20	21	28	1.98
46395--46442	21	2.3	21	96	0	87	27	25	25	22	2.00
48935--49048	38	3.0	38	83	5	142	40	20	10	28	1.85
57721--57779	24	2.6	22	84	7	75	23	11	25	38	1.89
57721--57778	12	5.1	12	71	12	50	24	12	25	37	1.90
66259--66305	24	2.0	24	82	0	58	17	14	21	46	1.83
66270--66315	24	1.9	24	86	0	65	17	15	19	47	1.82
68947--68991	22	2.0	24	82	8	58	48	6	0	44	1.29
68991--69029	18	2.1	19	86	13	55	43	0	0	56	0.99
69003--69071	25	3.0	23	75	10	77	43	1	1	53	1.18
68971--69080	48	2.2	51	78	13	131	46	1	0	50	1.18
69110--69152	13	2.9	15	83	13	54	55	0	4	39	1.20

Tables:   1

The End!