Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001001.1 Hibiscus syriacus cultivar Beakdansim tig00002001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63384

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2892--2953
30
2.1
30
93
0
106
41
9
19
29
1.83
10471--10498
2
14.0
2
100
0
56
50
0
0
50
1.00
11647--11679
17
2.0
17
88
5
50
54
3
0
42
1.15
12118--12172
24
2.3
23
84
9
67
43
5
0
50
1.25
12400--12532
29
4.5
29
75
11
119
50
1
11
36
1.48
12505--12555
24
2.1
25
85
3
68
50
1
7
39
1.42
16221--16246
13
2.0
13
100
0
52
38
15
15
30
1.88
26149--26173
7
3.6
7
100
0
50
52
0
0
48
1.00
28965--29028
23
2.8
22
85
4
83
26
26
26
20
1.99
29044--29364
103
3.1
103
93
0
579
36
23
13
26
1.92
29911--29953
21
2.0
21
90
0
68
16
23
27
32
1.96
33055--33118
23
2.8
22
80
4
74
28
26
25
20
1.99
33134--33450
103
3.1
103
95
0
589
36
23
12
26
1.91
36250--36320
34
2.1
34
91
0
115
11
12
21
54
1.68
36255--36361
37
3.0
37
82
4
103
12
12
16
58
1.62
36543--36599
23
2.5
23
82
5
62
14
5
17
63
1.48
36606--36733
57
2.2
57
80
2
150
14
10
15
59
1.61
36643--36753
24
4.7
24
76
2
98
16
10
13
59
1.61
38359--38392
17
1.9
18
88
5
52
44
26
0
29
1.55
40394--40438
17
2.6
17
78
0
63
37
0
6
55
1.26
43336--43395
26
2.3
26
100
0
120
25
15
33
26
1.95
51358--51398
20
2.0
20
86
9
57
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55147--55369
39
6.1
38
86
7
295
33
16
21
29
1.95
55147--55353
33
5.8
33
82
10
216
33
15
22
28
1.95
55147--55353
105
1.9
106
90
4
326
33
15
22
28
1.95
55956--56044
42
2.2
40
93
4
151
41
4
7
46
1.53

Tables:   1

The End!