genome.fa.s1002.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001002.1 Hibiscus syriacus cultivar Beakdansim tig00002004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75823

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2474--2624	31	4.9	31	88	8	211	24	18	21	35	1.95
2474--2631	61	2.5	62	88	9	241	25	17	20	36	1.95
3246--3292	21	2.2	21	96	0	85	23	17	31	27	1.96
3727--3783	2	28.5	2	92	7	98	49	1	0	49	1.11
5966--6023	23	2.5	23	80	11	64	44	1	1	51	1.21
5966--6024	12	5.1	11	76	15	57	44	1	1	52	1.21
7519--7565	2	23.5	2	100	0	94	51	0	0	48	1.00
9595--9674	14	6.3	14	72	21	86	8	15	25	51	1.71
9596--9681	24	3.6	24	93	0	145	9	13	24	52	1.70
9595--9674	38	2.1	37	84	13	101	8	15	25	51	1.71
9596--9694	24	4.1	24	92	0	144	11	13	22	53	1.70
10180--10267	23	3.8	23	90	0	113	27	23	22	26	2.00
10180--10266	11	7.6	11	74	7	75	27	22	22	26	2.00
10180--10291	46	2.4	47	80	1	118	25	23	23	27	2.00
10193--10291	23	4.2	24	85	3	87	26	23	24	26	2.00
10490--10551	16	3.9	16	95	0	115	8	11	24	56	1.61
11162--11318	30	5.2	30	96	0	287	34	23	17	24	1.96
11546--11802	4	64.2	4	100	0	514	49	24	0	25	1.50
12711--12760	19	2.6	19	100	0	100	22	30	18	30	1.97
17208--17364	30	5.2	30	96	0	287	33	24	17	23	1.96
17592--17628	4	9.2	4	93	0	65	45	27	0	27	1.54
19760--19802	19	2.3	19	84	11	61	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23546--23607	27	2.3	27	97	0	115	29	24	12	33	1.92
26738--26787	3	16.7	3	82	0	64	4	30	28	38	1.75
26730--26790	18	3.6	18	82	13	83	8	29	24	37	1.84
26731--26787	12	4.8	12	77	0	51	7	29	26	36	1.83
28846--28886	18	2.3	18	91	4	66	63	2	4	29	1.28
28928--28958	10	3.1	10	95	0	53	35	0	32	32	1.58
30195--30356	75	2.2	75	90	6	249	38	9	15	35	1.81
30392--30554	75	2.2	75	90	0	254	39	12	14	33	1.84
30194--30845	198	3.3	194	76	10	689	38	12	14	33	1.84
30464--30773	98	3.2	98	85	4	437	39	13	12	33	1.83
30725--30796	23	3.1	23	91	0	108	36	18	13	31	1.90
31389--31595	108	1.9	108	89	2	317	35	13	12	38	1.82
32136--32309	85	2.0	85	94	0	303	35	13	13	37	1.84
32341--32409	26	2.8	24	77	14	68	36	1	4	57	1.27
32393--32489	48	2.0	48	80	11	110	43	2	7	47	1.42
39449--39485	2	18.5	2	100	0	74	51	0	0	48	1.00
39659--39691	2	16.5	2	100	0	66	51	0	0	48	1.00
47608--47823	43	5.0	43	94	0	324	25	31	17	25	1.97
51801--51837	20	1.9	19	89	10	58	51	0	18	29	1.47
54327--54369	18	2.4	19	80	11	54	37	6	2	53	1.41
54423--54451	2	14.5	2	100	0	58	48	0	0	51	1.00
54483--54597	39	3.0	39	80	13	139	36	16	0	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58429--58522	44	2.1	44	90	0	143	43	27	7	21	1.79
68960--69208	128	2.0	126	91	1	408	44	10	10	34	1.73
69304--69346	14	3.2	14	84	15	56	46	2	0	51	1.13
69324--69377	23	2.3	23	87	6	74	38	3	0	57	1.17
69964--70027	25	2.6	25	81	18	80	50	1	6	42	1.37
70091--70122	8	4.1	8	92	8	57	53	9	0	37	1.34
70091--70122	15	2.1	16	94	5	57	53	9	0	37	1.34
71073--71126	20	2.7	20	100	0	108	27	16	29	25	1.97
73948--73994	22	2.1	23	88	4	69	19	23	17	40	1.91
73959--74001	22	2.0	22	85	0	59	20	20	16	41	1.90
75120--75171	22	2.4	22	90	6	79	21	25	15	38	1.92
75405--75466	25	2.5	25	82	10	65	37	12	8	41	1.73
75506--75575	31	2.3	29	85	4	95	37	5	27	30	1.80

Tables:   1

The End!