Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001003.1 Hibiscus syriacus cultivar Beakdansim tig00002005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60381

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1180--1231
20
2.7
20
87
3
79
48
21
19
11
1.80
1617--1667
22
2.3
22
89
0
75
23
13
41
21
1.89
1789--1837
19
2.5
19
80
9
55
20
12
16
51
1.76
1843--1926
20
4.2
20
76
0
87
28
20
20
30
1.97
1861--1971
40
2.8
40
78
10
102
27
15
24
33
1.95
1915--1989
19
3.8
20
79
13
84
22
13
29
34
1.92
1916--1989
20
3.8
19
75
12
78
22
13
29
33
1.93
6235--6275
3
13.7
3
85
10
57
68
4
0
26
1.10
6235--6286
6
8.8
6
87
10
54
69
7
0
23
1.14
12489--12532
23
2.0
22
82
13
54
25
9
9
56
1.59
18540--18605
35
2.0
32
96
0
96
33
27
30
9
1.88
18695--18780
24
3.6
24
74
0
91
39
17
18
24
1.92
18688--18806
48
2.5
48
98
0
229
41
16
18
23
1.90
19492--19669
29
6.2
29
82
8
195
41
20
4
33
1.73
19685--19755
18
4.1
17
92
1
115
14
22
46
16
1.83
25469--25519
2
25.5
2
100
0
102
49
0
0
50
1.00
26756--26818
29
2.2
29
85
0
81
44
17
3
34
1.65
26776--26931
29
5.5
28
83
7
163
38
21
5
33
1.78
26776--26931
57
2.8
56
80
7
188
38
21
5
33
1.78
26946--27017
18
4.1
18
81
3
92
15
20
44
19
1.86
27852--28023
86
2.0
86
93
0
290
37
11
17
33
1.86
28661--28701
21
2.0
21
90
0
64
31
21
7
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31706--31732
13
2.1
13
100
0
54
0
22
7
70
1.12
32176--32261
3
29.0
3
83
4
104
63
0
3
32
1.11
32178--32274
12
8.8
11
76
17
53
64
0
5
29
1.15
32509--33082
119
4.9
119
95
1
1007
28
20
13
37
1.91
33796--34448
50
13.1
50
98
0
1234
39
23
13
23
1.91
46203--46255
18
3.2
16
78
17
56
71
1
0
26
0.96
48395--48489
3
32.0
3
83
2
120
64
0
3
32
1.10
48400--48502
12
8.8
11
80
12
57
65
0
4
30
1.14
51437--51471
2
17.5
2
100
0
70
48
0
0
51
1.00
51982--52034
2
26.5
2
92
0
88
50
0
3
45
1.19
56077--56144
20
3.4
20
93
0
118
23
30
13
32
1.93
58506--58567
21
3.0
21
90
0
97
14
20
19
45
1.85
58502--58574
21
3.5
21
86
0
92
17
21
20
39
1.92
58564--58657
20
4.7
20
81
7
127
37
20
20
22
1.95
58564--58657
41
2.3
40
85
5
127
37
20
20
22
1.95
58657--58750
20
4.7
20
94
0
152
30
25
19
24
1.98
59577--59630
24
2.2
24
90
0
81
22
16
20
40
1.91

Tables:   1

The End!