genome.fa.s1004.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001004.1 Hibiscus syriacus cultivar Beakdansim tig00002006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116780

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177--216	20	2.1	19	85	4	53	65	2	0	32	1.06
4104--4255	64	2.4	64	100	0	304	36	5	11	46	1.64
9249--9288	2	20.0	2	100	0	80	50	0	0	50	1.00
15555--15594	20	2.1	18	86	9	53	72	5	0	22	1.04
18923--19000	34	2.3	34	95	0	138	66	6	7	19	1.39
19821--19872	2	26.0	2	100	0	104	50	0	0	50	1.00
20354--20398	17	2.5	18	85	7	56	66	0	2	31	1.04
20346--20398	24	2.2	25	82	3	63	66	0	1	32	1.03
34744--35257	173	3.0	173	87	2	728	39	21	15	23	1.91
36340--36499	20	7.9	20	77	5	124	38	24	19	18	1.93
36381--36493	41	2.8	41	94	1	183	38	25	19	16	1.93
36381--36491	20	5.4	20	84	3	141	38	25	18	17	1.92
36340--36501	61	2.7	60	81	3	173	38	24	19	18	1.93
36496--36547	20	2.6	20	84	6	70	25	19	21	34	1.96
37410--37463	24	2.2	24	93	0	90	20	18	20	40	1.91
39977--40133	19	8.7	19	74	16	136	45	19	21	14	1.85
40139--40218	33	2.4	33	85	0	97	10	21	20	48	1.78
40325--40361	14	2.6	14	91	0	65	45	21	0	32	1.52
41710--41776	21	3.2	21	66	6	55	20	19	35	23	1.95
41710--41832	42	2.9	41	79	7	113	23	17	36	21	1.95
42229--42316	19	4.8	19	74	16	87	45	21	21	11	1.83
42313--42395	19	4.2	20	72	13	64	14	15	26	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42450--42665	94	2.3	94	93	0	378	50	19	12	18	1.78
42590--42735	70	2.1	70	93	2	249	49	20	13	17	1.79
42496--42798	164	1.8	164	93	1	527	46	19	13	20	1.83
43156--43230	21	3.7	21	67	19	52	14	13	41	30	1.84
44497--44562	33	2.0	34	87	3	98	43	22	22	10	1.84
44489--44600	19	6.1	19	76	11	117	46	19	21	12	1.83
44607--44660	20	2.7	20	88	0	72	12	16	22	48	1.80
44613--44663	20	2.5	20	90	0	75	13	13	21	50	1.76
45197--45412	20	10.7	19	75	14	166	19	19	23	37	1.94
45199--45371	40	4.3	41	92	2	271	19	20	23	37	1.94
45203--45412	81	2.6	81	83	6	239	19	19	22	38	1.94
48835--48905	2	35.5	2	100	0	142	50	0	0	49	1.00
49070--49118	24	2.0	24	84	0	62	48	14	14	22	1.79
49087--49202	24	4.8	24	86	6	155	40	18	16	24	1.91
49120--49220	48	2.1	48	85	3	132	41	19	14	23	1.89
50327--50361	18	1.9	18	88	0	52	28	17	0	54	1.43
51526--51611	8	10.5	8	72	18	63	20	24	38	16	1.93
51569--51604	18	2.0	18	94	0	63	16	19	44	19	1.87
58941--58982	18	2.3	18	83	4	57	23	7	4	64	1.38
59158--59209	15	3.5	15	89	0	77	9	67	15	7	1.41
66864--66905	7	6.0	7	100	0	84	28	0	0	71	0.86
67217--67678	112	4.1	112	91	0	692	45	13	14	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69211--69272	22	3.0	22	77	22	89	12	22	46	17	1.82
69223--69271	17	2.9	17	96	0	89	12	22	46	18	1.82
69307--69376	29	2.4	31	78	9	83	31	25	24	18	1.98
70107--70564	182	2.5	182	92	1	749	41	12	16	29	1.85
71336--71372	13	2.8	13	95	0	65	18	45	24	10	1.81
71372--71405	15	2.3	15	94	0	59	17	35	23	23	1.95
72718--72753	18	2.0	18	88	0	54	52	0	16	30	1.44
73931--74000	12	5.8	12	78	6	70	15	14	18	51	1.77
73894--74002	24	4.5	24	79	2	112	19	15	17	47	1.82
79190--79214	12	2.1	12	100	0	50	40	16	20	24	1.91
84004--84035	2	16.0	2	100	0	64	50	0	0	50	1.00
89850--90089	43	5.7	42	79	11	226	53	6	15	24	1.65
89837--90089	86	3.0	85	78	12	256	52	6	15	24	1.67
89893--90207	86	3.7	86	75	14	201	52	7	15	25	1.68
92408--92456	22	2.2	23	82	17	68	46	20	0	32	1.51
94297--94343	21	2.2	21	78	14	53	21	8	2	68	1.27
94801--94968	84	2.0	84	97	0	318	23	21	26	27	1.99
96150--96200	18	2.8	18	81	3	66	58	0	0	41	0.98
103791--103820	5	6.0	5	100	0	60	40	40	0	20	1.52
103792--103826	15	2.3	15	90	0	52	42	37	2	17	1.64
106960--107167	20	10.2	20	78	6	222	37	25	18	18	1.93
106960--107167	41	5.1	41	91	1	330	37	25	18	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109416--109469	24	2.2	24	93	0	90	40	20	18	20	1.91
109416--109483	24	2.8	24	84	0	64	38	20	17	23	1.93
110320--110371	19	2.7	19	90	3	77	19	19	30	30	1.96
110323--110554	20	11.6	20	76	10	197	19	18	24	37	1.94
110344--110554	40	5.2	41	86	4	286	19	18	23	37	1.94
110563--110611	20	2.5	20	90	6	73	12	20	24	42	1.86
110644--110718	20	3.7	20	72	15	64	20	20	25	34	1.96
116708--116762	22	2.4	23	78	9	58	50	1	1	45	1.22

Tables:   1

The End!