genome.fa.s1005.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001005.1 Hibiscus syriacus cultivar Beakdansim tig00002007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142537

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2380--2484	18	5.8	18	89	0	156	19	20	32	28	1.96
2380--2484	54	1.9	54	92	3	176	19	20	32	28	1.96
9125--9164	21	1.9	21	85	10	55	52	0	10	37	1.35
10467--10504	18	2.1	18	100	0	76	26	5	15	52	1.64
14986--15043	25	2.3	25	96	0	107	12	1	24	62	1.39
15346--15401	28	2.0	28	100	0	112	39	0	32	28	1.57
15827--15900	22	3.7	19	78	16	69	27	31	18	22	1.98
15951--15998	21	2.3	21	92	0	78	37	22	16	22	1.94
18389--18459	35	2.0	35	97	0	133	25	15	22	36	1.93
18475--18568	18	5.2	18	92	1	143	21	21	30	26	1.98
26673--26723	26	2.0	25	84	3	66	58	3	0	37	1.16
33859--33897	15	2.6	15	83	0	51	15	17	30	35	1.91
36418--36452	18	1.9	18	94	0	61	25	34	20	20	1.96
39025--39065	12	3.1	13	80	19	57	46	14	17	21	1.84
41361--41400	21	1.9	21	94	0	71	30	15	7	47	1.72
41395--41493	33	3.0	33	94	1	164	32	7	15	45	1.73
41479--41533	13	4.2	13	75	13	58	34	3	12	49	1.59
41729--41785	21	2.7	21	91	0	96	19	26	26	28	1.99
41962--42007	15	2.9	15	78	12	56	30	13	10	45	1.77
41971--42004	18	1.9	18	94	5	61	38	11	11	38	1.79
42098--42129	16	2.0	17	88	11	50	43	21	21	12	1.86
47933--48051	55	2.1	56	81	4	134	35	14	8	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48817--48843	2	13.5	2	100	0	54	48	0	0	51	1.00
55850--55941	43	2.1	43	82	4	105	48	2	19	29	1.60
56540--56663	62	2.0	61	87	4	178	33	20	12	32	1.91
60658--60775	62	1.9	61	84	8	159	33	17	14	33	1.90
62212--62331	35	3.3	36	89	5	181	43	20	5	31	1.73
62263--62323	21	3.2	21	65	29	64	42	21	4	31	1.74
62214--62358	35	4.1	36	83	11	142	41	19	6	33	1.76
64585--64619	13	2.7	13	95	0	61	8	37	22	31	1.85
73388--73468	29	2.9	29	74	17	82	38	1	6	54	1.33
75463--75506	24	2.0	23	82	13	56	25	11	56	6	1.58
75658--75712	23	2.4	23	93	3	94	36	9	0	54	1.32
75935--76056	62	2.0	61	85	4	165	33	18	15	32	1.92
79567--79596	12	2.5	12	100	0	60	56	10	10	23	1.62
84191--84225	15	2.3	15	100	0	70	14	22	34	28	1.93
91048--91097	15	3.3	15	100	0	100	14	24	34	28	1.93
96486--96524	15	2.6	15	83	0	51	15	17	30	35	1.91
99054--99088	18	1.9	18	94	0	61	25	34	20	20	1.96
105958--106263	151	2.0	153	89	3	474	39	6	9	44	1.63
107944--107982	2	19.5	2	94	0	69	46	2	0	51	1.14
110542--110583	16	2.5	17	88	7	68	61	16	14	7	1.53
112720--112837	62	1.9	61	83	8	150	33	16	15	33	1.91
112898--113016	62	1.9	61	83	8	152	33	16	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112715--113078	179	2.0	179	98	1	703	29	17	16	37	1.91
113553--113645	46	2.0	46	100	0	186	40	25	18	15	1.89
114480--114599	35	3.3	36	89	5	181	43	20	5	31	1.73
114531--114591	21	3.2	21	65	29	64	42	21	4	31	1.74
114482--114626	35	4.1	36	83	11	142	41	19	6	33	1.76
116820--116854	13	2.7	13	95	0	61	8	37	22	31	1.85
125293--125675	180	2.1	179	91	4	610	45	8	2	42	1.50
125800--125828	15	1.9	15	100	0	58	17	6	27	48	1.72
128048--128128	29	2.9	29	74	17	82	38	1	6	54	1.33
130121--130164	24	2.0	23	82	13	56	25	11	56	6	1.58
130319--130369	23	2.2	23	96	0	93	39	9	0	50	1.35
130593--130714	62	2.0	61	85	4	165	33	18	15	32	1.92
134223--134252	12	2.5	12	100	0	60	56	10	10	23	1.62
138461--138651	95	2.0	96	89	3	296	31	19	17	31	1.95
139669--139792	43	2.9	43	86	0	167	30	28	16	25	1.96
140032--140826	84	9.5	83	78	3	773	30	25	19	24	1.98
140032--140826	168	4.7	168	90	0	1092	30	25	19	24	1.98
141446--141579	43	3.1	43	91	0	169	34	10	6	48	1.64
141510--141579	21	3.2	23	64	12	65	34	8	7	50	1.61

Tables:   1

The End!