genome.fa.s1006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001006.1 Hibiscus syriacus cultivar Beakdansim tig00002008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126334

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679--740	30	2.1	30	100	0	124	19	6	12	61	1.53
717--752	16	2.2	16	90	0	54	19	5	0	75	1.00
5712--5749	17	2.2	18	90	4	60	52	0	0	47	1.00
5755--5783	2	14.5	2	100	0	58	48	0	0	51	1.00
19614--19649	2	18.0	2	100	0	72	50	0	0	50	1.00
23885--23921	17	2.2	16	90	4	56	54	5	2	37	1.38
28772--28824	22	2.4	22	78	9	54	33	20	16	28	1.95
31101--31142	21	2.0	21	90	0	66	28	16	7	47	1.73
31137--31240	33	3.2	33	89	6	158	29	7	16	46	1.75
33856--33882	2	13.5	2	100	0	54	48	0	0	51	1.00
34303--34330	2	14.0	2	100	0	56	50	0	0	50	1.00
41003--41036	14	2.4	14	90	0	50	0	35	0	64	0.94
41807--41832	13	2.0	13	100	0	52	30	0	0	69	0.89
46553--46599	22	2.0	24	88	8	71	25	6	4	63	1.36
49625--49740	59	2.0	59	84	3	153	34	0	10	54	1.41
50365--50417	19	2.8	19	97	0	97	52	22	16	7	1.69
50442--50540	21	4.8	20	75	6	81	37	23	18	21	1.94
50507--50661	40	3.8	40	82	4	186	37	26	18	18	1.93
50507--50660	20	7.7	20	80	7	168	37	26	18	18	1.93
51043--51127	33	2.6	33	92	0	134	11	21	22	44	1.84
51067--51136	19	3.9	19	73	17	78	11	22	21	44	1.84
52834--53209	93	4.1	93	98	0	727	22	12	19	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53257--53385	19	7.3	19	75	17	125	45	28	17	8	1.77
53293--53385	33	2.8	32	91	4	150	46	27	18	7	1.76
53257--53385	52	2.5	52	74	14	140	45	28	17	8	1.77
53381--53480	19	5.8	18	74	21	99	11	21	21	47	1.81
53403--53459	14	3.7	14	77	20	60	10	21	22	45	1.82
53386--53478	33	2.8	33	95	0	168	10	20	21	47	1.80
53381--53496	19	6.6	19	70	19	72	12	19	22	45	1.83
55418--55453	14	2.6	14	95	0	63	33	0	22	44	1.53
55560--55657	19	5.4	19	84	13	143	45	17	22	14	1.84
55560--55676	53	2.2	53	96	1	218	43	17	24	13	1.86
55666--55887	19	12.7	19	75	18	232	15	22	17	45	1.85
55672--55804	33	3.9	33	86	9	194	15	22	16	45	1.84
55666--55859	52	3.7	52	89	4	241	15	23	16	44	1.85
55666--55820	71	2.2	71	95	0	274	16	22	16	44	1.86
55794--55901	33	3.2	33	85	7	164	12	22	19	45	1.84
56453--56703	20	12.5	20	84	2	261	19	16	25	39	1.92
56471--56704	121	1.9	121	83	5	303	18	17	25	38	1.92
56690--56807	21	5.7	21	69	10	82	22	16	25	35	1.95
56670--56768	42	2.4	43	77	11	100	21	18	23	37	1.94
57739--57787	16	3.0	16	75	3	53	28	2	2	67	1.13
64226--64276	19	2.6	20	90	3	77	43	23	17	15	1.88
64226--64483	20	12.6	20	74	9	153	38	19	22	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64329--64481	40	3.8	40	83	5	207	37	16	23	22	1.93
64331--64481	63	2.5	60	80	6	176	37	16	23	22	1.94
64310--64483	83	2.1	83	94	0	303	36	17	24	21	1.94
64570--64613	6	7.5	6	97	2	81	31	52	15	0	1.44
65294--65321	6	4.7	6	100	0	56	0	14	50	35	1.43
65408--65478	20	3.4	20	74	5	70	16	22	21	39	1.92
75669--75722	24	2.3	23	78	15	56	38	12	3	44	1.61
84763--84817	30	2.0	29	82	13	71	56	7	7	29	1.53
86471--86541	33	2.2	33	97	0	133	23	9	11	54	1.65
91981--92100	42	2.9	42	97	0	222	15	20	19	45	1.86
92289--92349	22	2.8	23	82	7	65	47	0	0	52	1.00
92300--92448	31	5.1	31	71	25	96	46	0	1	51	1.14
92402--92465	28	2.2	28	86	8	85	43	1	1	53	1.19
92633--92682	20	2.5	20	100	0	100	34	16	10	40	1.81
92665--92732	15	4.5	15	89	7	102	36	19	7	36	1.79
94551--94648	48	2.0	48	96	0	178	59	19	16	5	1.55
96080--96127	23	2.1	23	92	0	78	16	12	37	33	1.86
96440--96478	18	2.2	18	86	9	53	58	5	5	30	1.41
107446--107499	27	2.0	27	100	0	108	40	11	25	22	1.87
107449--107507	27	2.2	27	93	0	100	44	11	23	20	1.85
108710--108780	34	2.1	34	100	0	142	23	14	19	42	1.88
116636--116698	25	2.5	25	80	10	67	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116725--116763	17	2.2	18	90	4	62	23	15	28	33	1.95
116730--116786	23	2.5	23	82	2	71	19	17	31	31	1.95
117999--118032	13	2.8	12	82	8	50	26	0	2	70	1.01
120618--120692	30	2.5	31	80	8	91	52	8	25	14	1.69
120770--120909	70	2.0	70	90	0	217	43	13	22	20	1.87

Tables:   1

The End!