Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001007.1 Hibiscus syriacus cultivar Beakdansim tig00002010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76350

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9603--9637
2
17.5
2
100
0
70
48
0
0
51
1.00
17584--17621
14
2.6
15
87
8
60
28
2
13
55
1.51
22028--22058
3
10.3
3
100
0
62
35
0
0
64
0.94
26116--26182
34
2.0
34
100
0
134
32
16
23
26
1.96
27754--27780
5
5.4
5
100
0
54
37
40
0
22
1.54
28300--28345
2
23.0
2
100
0
92
50
0
0
50
1.00
31594--31634
2
21.0
2
95
5
75
48
0
0
51
1.00
32078--32102
13
1.9
13
100
0
50
76
0
0
24
0.80
33057--33092
2
18.0
2
100
0
72
50
0
0
50
1.00
37886--37958
23
3.2
23
88
0
101
36
4
19
39
1.71
38373--38445
23
3.2
23
88
0
110
34
6
21
36
1.81
38861--38933
23
3.2
23
88
0
110
35
5
20
38
1.76
39345--39417
23
3.2
23
92
0
119
34
5
21
38
1.77
39834--39906
23
3.2
23
86
0
101
36
5
17
39
1.73
37466--40797
489
6.8
489
95
0
5806
41
7
10
40
1.68
40323--40395
23
3.2
23
94
0
119
35
6
20
36
1.80
41024--41150
19
6.5
19
72
15
66
61
0
3
35
1.12
37466--40797
972
3.4
960
93
1
5266
41
7
10
40
1.68
41058--41136
23
3.7
22
77
19
78
58
0
2
39
1.12
41058--41118
23
2.7
23
87
9
83
57
0
3
39
1.15
41133--41157
6
4.2
6
100
0
50
84
0
0
16
0.63
41251--41283
2
16.5
2
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41727--41770
18
2.4
18
85
11
54
43
20
13
22
1.87
42048--42093
3
16.0
3
86
8
69
34
0
0
65
0.93
42165--42213
25
2.0
25
100
0
98
36
22
16
24
1.94
45638--45699
32
2.0
32
96
3
117
14
14
9
61
1.57
45878--46293
210
2.0
210
85
0
564
31
21
23
24
1.98
48134--48211
26
3.2
25
67
22
76
24
23
10
42
1.85
48149--48223
20
3.5
20
70
20
62
26
25
10
37
1.89
50536--50605
36
2.0
34
83
5
86
32
15
10
41
1.81
50396--50786
196
2.0
197
89
4
612
31
15
11
41
1.83
50731--50850
35
3.3
36
79
12
120
35
16
11
36
1.85
50953--51034
36
2.3
36
77
8
87
36
18
13
31
1.89
51558--51700
29
5.1
28
82
6
157
27
11
15
44
1.81
51564--51700
55
2.4
55
78
10
143
24
12
16
46
1.81
51736--52136
40
9.3
45
72
14
249
25
30
19
24
1.98
51751--52143
83
4.6
83
71
15
268
25
31
18
24
1.98
51713--52094
129
3.0
129
96
0
694
25
30
19
24
1.98
52293--52345
3
18.0
3
81
11
65
35
0
0
64
0.94
52418--52466
25
2.0
25
100
0
98
36
22
16
24
1.94
56064--56139
37
2.1
37
100
0
152
40
13
9
36
1.76
56065--56124
19
3.2
19
61
4
50
41
11
10
36
1.75
71323--71352
6
5.0
6
100
0
60
33
0
0
66
0.92
74968--75021
28
1.9
28
100
0
108
33
24
7
35
1.83

Tables:   1

The End!