Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001009.1 Hibiscus syriacus cultivar Beakdansim tig00002013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165066

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
807--935
65
2.0
65
93
3
224
44
19
20
16
1.87
1045--1482
180
2.5
173
86
6
573
39
14
29
16
1.88
1058--1657
180
3.5
176
80
11
516
39
14
28
17
1.89
4035--4068
17
2.0
17
88
0
50
20
8
8
61
1.52
45117--45184
29
2.3
29
84
0
91
19
13
19
48
1.81
45789--45849
29
2.1
30
87
3
88
67
13
1
18
1.31
55790--55815
13
2.0
13
100
0
52
46
15
23
15
1.83
73216--73282
32
2.1
32
94
0
116
43
10
10
35
1.73
78565--78634
27
2.6
27
90
4
106
38
18
7
35
1.78
82064--82096
12
3.0
11
87
12
50
72
0
18
9
1.10
82679--82716
20
1.9
20
94
0
67
44
10
23
21
1.83
82679--82722
20
2.3
19
88
7
63
45
9
25
20
1.80
87562--87598
17
2.2
16
86
9
56
37
27
24
10
1.88
87767--87807
2
22.0
2
85
14
61
51
0
0
48
1.00
88804--88838
17
2.1
17
100
0
70
5
34
42
17
1.73
96732--96765
2
17.0
2
100
0
68
50
0
0
50
1.00
103719--103805
42
2.1
42
87
8
124
49
17
4
28
1.66
119028--119064
16
2.4
15
90
4
56
43
2
5
48
1.40
136943--137058
24
4.8
24
89
4
180
26
13
19
39
1.89
136959--137021
12
5.2
12
72
14
58
26
12
22
38
1.90
139348--139388
19
2.3
18
91
8
66
9
14
4
70
1.30
139771--139819
21
2.2
22
85
10
73
30
24
12
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139777--139820
21
2.1
21
95
0
79
25
27
13
34
1.93
147102--147149
20
2.4
20
85
0
60
47
4
20
27
1.68
147116--147169
20
2.7
20
94
0
90
46
7
24
22
1.77
152915--152948
3
11.0
3
93
6
59
0
32
0
67
0.91
153402--153440
3
13.0
3
86
0
51
66
0
28
5
1.12
155948--156008
29
2.1
30
87
3
88
13
19
18
49
1.79
161058--161104
23
2.0
23
83
0
58
23
14
19
42
1.88
161362--161415
26
2.1
26
83
10
67
37
16
18
27
1.93

Tables:   1

The End!